View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19828_low_53 (Length: 250)

Name: NF19828_low_53
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19828_low_53
NF19828_low_53
[»] chr4 (14 HSPs)
chr4 (19-217)||(37604958-37605156)
chr4 (52-217)||(37598780-37598932)
chr4 (97-215)||(16950554-16950671)
chr4 (143-217)||(41814726-41814800)
chr4 (143-217)||(7898105-7898179)
chr4 (136-217)||(4056722-4056803)
chr4 (136-217)||(12877058-12877139)
chr4 (136-184)||(8983342-8983390)
chr4 (136-184)||(13688434-13688482)
chr4 (136-184)||(13697500-13697548)
chr4 (136-184)||(21302890-21302938)
chr4 (136-184)||(36356303-36356351)
chr4 (136-184)||(40001231-40001279)
chr4 (136-184)||(54345365-54345413)
[»] chr6 (2 HSPs)
chr6 (44-164)||(10490038-10490157)
chr6 (136-184)||(22701303-22701351)
[»] chr1 (5 HSPs)
chr1 (52-217)||(14363302-14363466)
chr1 (151-217)||(11811639-11811705)
chr1 (44-184)||(37407473-37407612)
chr1 (136-184)||(5727107-5727155)
chr1 (136-184)||(27713433-27713481)
[»] scaffold0060 (1 HSPs)
scaffold0060 (97-217)||(50043-50162)
[»] chr3 (5 HSPs)
chr3 (97-215)||(12969115-12969232)
chr3 (136-184)||(3480004-3480052)
chr3 (136-184)||(15766076-15766124)
chr3 (136-184)||(17365709-17365757)
chr3 (136-184)||(20093707-20093755)
[»] chr2 (4 HSPs)
chr2 (95-161)||(32081691-32081756)
chr2 (136-214)||(24028579-24028656)
chr2 (136-184)||(42726505-42726553)
chr2 (136-184)||(44757657-44757705)
[»] scaffold0517 (1 HSPs)
scaffold0517 (44-184)||(462-601)
[»] scaffold0011 (1 HSPs)
scaffold0011 (96-217)||(3986-4106)
[»] scaffold0108 (1 HSPs)
scaffold0108 (97-217)||(22454-22573)
[»] chr5 (3 HSPs)
chr5 (93-217)||(13585744-13585867)
chr5 (136-184)||(17507064-17507112)
chr5 (136-184)||(24774414-24774462)
[»] scaffold0070 (2 HSPs)
scaffold0070 (143-201)||(61290-61348)
scaffold0070 (143-201)||(65492-65550)
[»] chr8 (4 HSPs)
chr8 (96-217)||(19432394-19432514)
chr8 (96-217)||(19568544-19568664)
chr8 (136-184)||(21647139-21647187)
chr8 (136-184)||(32012688-32012736)
[»] chr7 (5 HSPs)
chr7 (136-217)||(10390391-10390472)
chr7 (136-184)||(17497962-17498010)
chr7 (136-184)||(17555204-17555252)
chr7 (136-184)||(33240165-33240213)
chr7 (136-184)||(47995962-47996010)
[»] scaffold0166 (1 HSPs)
scaffold0166 (136-184)||(16798-16846)
[»] scaffold0165 (1 HSPs)
scaffold0165 (136-184)||(13975-14023)
[»] scaffold0014 (1 HSPs)
scaffold0014 (136-184)||(28535-28583)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 37605156 - 37604958
Alignment:
Q  19 gatattgcaaattatattttcagttataaatgcatttgtcactttcattcaccttaaatcaatatgaaataatcaaattgtcaattttttcatgtctttg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  37605156 gatattgcaaattatattttcagttataaatgcatttgtcactttcattcaccttaaatcaatatgaaataatcaaattgtcaaatttttcatgtctttg 37605057  T
Q  119 cttaggagcttgtttaaagactatacaaagatttatctaacttacaagctttattttcttgtccataaataacaaaactttcatattgttccatataga 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37605056 cttaggagcttgtttaaagactatacaaagatttatctaacttacaagctttattttcttgtccataaataacaaaaatttcatattgttccatataga 37604958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 52 - 217
Target Start/End: Complemental strand, 37598932 - 37598780
Alignment:
Q  52 atttgtcactttcattcaccttaaatcaatatgaaataatcaaattgtcaattttttcatgtctttgcttaggagcttgtttaaagactatacaaagatt 151  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||||||  |||||||||||||||||| |||||||||||||||||||||||||| |    
T  37598932 atttgtcactttcattcaccttaaatcaatatgagataatcaagttgtcaaacttttcatgtctttgcttaagagcttgtttaaagactatacaaagact 37598833  T
Q  152 tatctaacttacaagctttattttcttgtccataaataacaaaactttcatattgttccatataga 217  Q
    ||||||             |||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  37598832 tatcta-------------attttcttgtccatgaatcacaaaaccttcatattgttccatataga 37598780  T

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Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 16950554 - 16950671
Alignment:
Q  97 tgtcaattttttcatgtctttgcttaggagcttgtttaaagactatacaaagatttatctaacttacaagctttattttcttgtccataaataacaaaac 196  Q
    ||||||||||||||||||  | | || |||||||||| | ||| ||||||||| ||||||||||||||| | || ||||||||||||| ||| |||||||    
T  16950554 tgtcaattttttcatgtcgatccatatgagcttgtttta-gaccatacaaagaattatctaacttacaaaccttgttttcttgtccatgaatcacaaaac 16950652  T
Q  197 tttcatattgttccatata 215  Q
     ||||  || |||||||||    
T  16950653 cttcaggttcttccatata 16950671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 217
Target Start/End: Original strand, 41814726 - 41814800
Alignment:
Q  143 acaaagatttatctaacttacaagctttattttcttgtccataaataacaaaactttcatattgttccatataga 217  Q
    ||||||| ||||||||||||||| |||| ||||||||||||| ||  ||||||| ||||  ||||||||||||||    
T  41814726 acaaagaattatctaacttacaaactttgttttcttgtccatgaaccacaaaacattcaggttgttccatataga 41814800  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 7898179 - 7898105
Alignment:
Q  143 acaaagatttatctaacttacaagctttattttcttgtccataaataacaaaactttcatattgttccatataga 217  Q
    ||||||| |||| |||||||||| |||  ||||||||||||| ||| ||||||| ||||  ||||||||||||||    
T  7898179 acaaagaattatttaacttacaaacttcgttttcttgtccatgaatcacaaaaccttcaggttgttccatataga 7898105  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 4056722 - 4056803
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccataaataacaaaactttcatattgttccatataga 217  Q
    |||| ||||| |||||||||||||||||||   || |||||||||| || ||| ||||||| | || |||| ||||||||||    
T  4056722 agaccatacatagatttatctaacttacaaatcttgttttcttgtctatgaatcacaaaacctccaaattgctccatataga 4056803  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 217
Target Start/End: Original strand, 12877058 - 12877139
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccataaataacaaaactttcatattgttccatataga 217  Q
    |||| |||||| ||||||||||||||||   | || ||||||||||||| ||| ||||||| |||   ||||||||||||||    
T  12877058 agaccatacaatgatttatctaacttactgaccttgttttcttgtccatgaatcacaaaaccttctggttgttccatataga 12877139  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 8983390 - 8983342
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  8983390 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 8983342  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 13688434 - 13688482
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  13688434 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 13688482  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 13697500 - 13697548
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  13697500 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 13697548  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 21302938 - 21302890
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  21302938 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 21302890  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 36356303 - 36356351
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  36356303 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 36356351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 40001231 - 40001279
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  40001231 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 40001279  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 54345365 - 54345413
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  54345365 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 54345413  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 164
Target Start/End: Original strand, 10490038 - 10490157
Alignment:
Q  44 ataaatgcatttgtcactttcattcaccttaaatcaatatgaaataatcaaattgtcaattttttcatgtctttgcttaggagcttgtttaaagactata 143  Q
    |||||||||||||||||||||||||||||| ||  |||   |||| || || |||||||  |||||||| | ||||||||| ||||||||  |||| |||    
T  10490038 ataaatgcatttgtcactttcattcaccttgaactaattcaaaatcattaagttgtcaaacttttcatgccattgcttaggggcttgttt-tagaccata 10490136  T
Q  144 caaagatttatctaacttaca 164  Q
    || |||||| |||||||||||    
T  10490137 cagagatttgtctaacttaca 10490157  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 22701351 - 22701303
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  22701351 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 22701303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 52 - 217
Target Start/End: Original strand, 14363302 - 14363466
Alignment:
Q  52 atttgtcactttcattcaccttaaatcaatatgaaataatcaaattgtcaattttttcatgtctttgcttaggagcttgtttaaagactatacaaagatt 151  Q
    ||||||||||||||| ||| ||||||  ||  || |||||||| || ||||  |||| ||||| |||||| ||| ||||||| ||||| ||| ||||| |    
T  14363302 atttgtcactttcatccactttaaatacattcgatataatcaagttatcaaacttttaatgtcattgctttggatcttgttt-aagaccatataaagact 14363400  T
Q  152 tatctaacttacaagctttattttcttgtccataaataacaaaactttcatattgttccatataga 217  Q
    ||| |||||||||| | ||  |||||||||||| ||| |||| | ||||| |||  ||||||||||    
T  14363401 tatttaacttacaaaccttgctttcttgtccatgaatcacaacattttcagattactccatataga 14363466  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 11811639 - 11811705
Alignment:
Q  151 ttatctaacttacaagctttattttcttgtccataaataacaaaactttcatattgttccatataga 217  Q
    ||||||||||||| | | || | ||||||||||| ||||||||||| ||||  ||||||||||||||    
T  11811639 ttatctaacttactaaccttgtcttcttgtccatgaataacaaaaccttcaggttgttccatataga 11811705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 184
Target Start/End: Complemental strand, 37407612 - 37407473
Alignment:
Q  44 ataaatgcatttgtcactttcattcaccttaaa-tcaatatgaaataatcaaattgtcaattttttcatgtctttgcttaggagcttgtttaaagactat 142  Q
    |||||| || ||||||||||||||||||||||| ||| | | || | || | |||||| | ||| ||||| | ||| || || |||||||| | ||| ||    
T  37407612 ataaatacacttgtcactttcattcaccttaaactcattctcaa-tcataagattgtcgaatttctcatgccattgtttcggtgcttgtttta-gaccat 37407515  T
Q  143 acaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||||||||| |||||||||||| |||| || ||||||||||    
T  37407514 acaaagatttgtctaacttacaaactttgttctcttgtccat 37407473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 5727107 - 5727155
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  5727107 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 5727155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 27713433 - 27713481
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  27713433 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 27713481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 217
Target Start/End: Complemental strand, 50162 - 50043
Alignment:
Q  97 tgtcaattttttcatgtctttgcttaggagcttgtttaaagactatacaaagatttatctaacttacaagctttattttcttgtccataaataacaaaac 196  Q
    |||||| ||| ||||||| || |||||||| || ||||| |||   ||||||| ||||||||||||||| |||  ||||||||||||| ||| |||||||    
T  50162 tgtcaaatttatcatgtcattccttaggagtttatttaa-gacctcacaaagaattatctaacttacaaacttcgttttcttgtccatgaatcacaaaac 50064  T
Q  197 tttcatattgttccatataga 217  Q
     ||||  ||||| ||||||||    
T  50063 cttcaggttgtttcatataga 50043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 215
Target Start/End: Complemental strand, 12969232 - 12969115
Alignment:
Q  97 tgtcaattttttcatgtctttgcttaggagcttgtttaaagactatacaaagatttatctaacttacaagctttattttcttgtccataaataacaaaac 196  Q
    |||||| |||| |||||| || |||||||| || ||| | ||| ||||||||| ||||||||||||||    || ||||||||||||| ||| |||||||    
T  12969232 tgtcaaattttacatgtcattccttaggagtttatttta-gaccatacaaagaattatctaacttacatatcttgttttcttgtccatgaatcacaaaac 12969134  T
Q  197 tttcatattgttccatata 215  Q
    |||||  ||||| ||||||    
T  12969133 tttcaggttgtttcatata 12969115  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 3480052 - 3480004
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  3480052 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 3480004  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 15766124 - 15766076
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  15766124 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 15766076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 17365709 - 17365757
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  17365709 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 17365757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 20093755 - 20093707
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  20093755 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 20093707  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 32081691 - 32081756
Alignment:
Q  95 attgtcaattttttcatgtctttgcttaggagcttgtttaaagactatacaaagatttatctaactt 161  Q
    |||||||||||||||||||| || | |||||| ||||||  |||| |||||||||||||||||||||    
T  32081691 attgtcaattttttcatgtcatttcataggagtttgttt-tagaccatacaaagatttatctaactt 32081756  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 214
Target Start/End: Original strand, 24028579 - 24028656
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccataaataacaaaactttcatattgttccatat 214  Q
    |||| ||||||||||| ||||||||||||| | || ||||||||||||| ||| || |||| ||||  |||||||||||    
T  24028579 agaccatacaaagatt-atctaacttacaaaccttgttttcttgtccatgaatcaccaaaccttcaagttgttccatat 24028656  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 42726553 - 42726505
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  42726553 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 42726505  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 44757705 - 44757657
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  44757705 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 44757657  T

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Target: scaffold0517 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0517
Description:

Target: scaffold0517; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 184
Target Start/End: Original strand, 462 - 601
Alignment:
Q  44 ataaatgcatttgtcactttcattcaccttaaa-tcaatatgaaataatcaaattgtcaattttttcatgtctttgcttaggagcttgtttaaagactat 142  Q
    |||||| || ||||||||||||||||||||||| ||| | | || | || | |||||| | ||| ||||| | ||| || ||||||||||| | ||| ||    
T  462 ataaatacacttgtcactttcattcaccttaaactcattctcaa-tcataagattgtcgaatttctcatgccattgtttcggagcttgtttta-gacaat 559  T
Q  143 acaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||||||||| |||||||||||| |||| || ||||||||||    
T  560 acaaagatttgtctaacttacaaactttgttctcttgtccat 601  T

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Target: scaffold0011 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 3986 - 4106
Alignment:
Q  96 ttgtcaattttttcatgtctttgcttaggagcttgtttaaagactatacaaagatttatctaacttacaagctttattttcttgtccataaataacaaaa 195  Q
    |||||||  |||||||| | ||||||||| |||||||| | ||| |||||||||||| |||||||||||  ||||  |||| |||||||  |  ||||||    
T  3986 ttgtcaaacttttcatgccattgcttaggtgcttgtttta-gaccatacaaagatttgtctaacttacagactttgctttcctgtccatggactacaaaa 4084  T
Q  196 ctttcatattgttccatataga 217  Q
    | ||||  ||||||||||||||    
T  4085 ccttcaggttgttccatataga 4106  T

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Target: scaffold0108 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 217
Target Start/End: Original strand, 22454 - 22573
Alignment:
Q  97 tgtcaattttttcatgtctttgcttaggagcttgtttaaagactatacaaagatttatctaacttacaagctttattttcttgtccataaataacaaaac 196  Q
    |||||| ||||||||||| || |||||||| || ||| | |||   ||||||| ||||||||||||||| |||| ||| ||| | ||| ||| | |||||    
T  22454 tgtcaaatttttcatgtcattccttaggagtttatttta-gacctcacaaagaattatctaacttacaaactttgtttccttattcatgaatcataaaac 22552  T
Q  197 tttcatattgttccatataga 217  Q
    |||||  ||||||||||||||    
T  22553 tttcaggttgttccatataga 22573  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 217
Target Start/End: Complemental strand, 13585867 - 13585744
Alignment:
Q  93 aaattgtcaattttttcatgtctttgcttaggagcttgtttaaagactatacaaagatttatctaacttacaagctttattttcttgtccataaataaca 192  Q
    ||||||||||  |||||||| | ||||||||| |||||||| | ||| ||||| |||||| |||||||||||  ||||  |||| |||||||  |  |||    
T  13585867 aaattgtcaaacttttcatgccattgcttaggtgcttgtttta-gaccatacagagatttgtctaacttacagactttgctttcctgtccatggactaca 13585769  T
Q  193 aaactttcatattgttccatataga 217  Q
    |||| ||||  ||||||||||||||    
T  13585768 aaaccttcaggttgttccatataga 13585744  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 17507064 - 17507112
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  17507064 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 17507112  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 24774462 - 24774414
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  24774462 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 24774414  T

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Target: scaffold0070 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 61290 - 61348
Alignment:
Q  143 acaaagatttatctaacttacaagctttattttcttgtccataaataacaaaactttca 201  Q
    ||||||| |||| |||||||||| |||| ||||||||||||| ||| ||||||| ||||    
T  61290 acaaagaattatttaacttacaaactttgttttcttgtccatgaatcacaaaaccttca 61348  T

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Target: scaffold0070; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 65492 - 65550
Alignment:
Q  143 acaaagatttatctaacttacaagctttattttcttgtccataaataacaaaactttca 201  Q
    ||||||| |||| |||||||||| |||| ||||||||||||| ||| ||||||| ||||    
T  65492 acaaagaattatttaacttacaaactttgttttcttgtccatgaatcacaaaaccttca 65550  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 19432394 - 19432514
Alignment:
Q  96 ttgtcaattttttcatgtctttgcttaggagcttgtttaaagactatacaaagatttatctaacttacaagctttattttcttgtccataaataacaaaa 195  Q
    |||||||  |||||||| | ||||||||| |||||||||| ||| ||| | |||||| |||||||||||  ||||  |||| |||||||  |  ||||||    
T  19432394 ttgtcaaacttttcatgccattgcttaggtgcttgtttaa-gaccatatagagatttgtctaacttacagacttttctttcctgtccatggactacaaaa 19432492  T
Q  196 ctttcatattgttccatataga 217  Q
    | ||||  ||||||||||||||    
T  19432493 ccttcaggttgttccatataga 19432514  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 19568544 - 19568664
Alignment:
Q  96 ttgtcaattttttcatgtctttgcttaggagcttgtttaaagactatacaaagatttatctaacttacaagctttattttcttgtccataaataacaaaa 195  Q
    |||||||  |||||||| | ||||||||| |||||||||| ||| ||| | |||||| |||||||||||  ||||  |||| |||||||  |  ||||||    
T  19568544 ttgtcaaacttttcatgccattgcttaggtgcttgtttaa-gaccatatagagatttgtctaacttacagacttttctttcctgtccatggactacaaaa 19568642  T
Q  196 ctttcatattgttccatataga 217  Q
    | ||||  ||||||||||||||    
T  19568643 ccttcaggttgttccatataga 19568664  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 21647187 - 21647139
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  21647187 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 21647139  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 32012688 - 32012736
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  32012688 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 32012736  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 10390472 - 10390391
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccataaataacaaaactttcatattgttccatataga 217  Q
    |||| ||||||||| || | |||||||||| | || |||| |||||||| ||| ||||||||||||  ||||| ||||||||    
T  10390472 agaccatacaaagaattgtttaacttacaaaccttgttttgttgtccatgaatcacaaaactttcaggttgtttcatataga 10390391  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 17497962 - 17498010
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  17497962 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 17498010  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 17555252 - 17555204
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  17555252 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 17555204  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 33240165 - 33240213
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  33240165 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 33240213  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 47995962 - 47996010
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  47995962 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 47996010  T

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Target: scaffold0166 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0166
Description:

Target: scaffold0166; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Complemental strand, 16846 - 16798
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  16846 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 16798  T

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Target: scaffold0165 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0165
Description:

Target: scaffold0165; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 13975 - 14023
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  13975 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 14023  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 184
Target Start/End: Original strand, 28535 - 28583
Alignment:
Q  136 agactatacaaagatttatctaacttacaagctttattttcttgtccat 184  Q
    |||| |||||||||||| |||||||||||| |||| || ||||||||||    
T  28535 agaccatacaaagatttgtctaacttacaaactttgttctcttgtccat 28583  T

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