View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_57 (Length: 249)
Name: NF19828_low_57
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_57 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 232
Target Start/End: Complemental strand, 6157415 - 6157202
Alignment:
| Q |
16 |
attatacttttggtcattatttaagttacaaacgtcacacactttgctatattttgttgcatttgcagcttgttgcagtgaaacagttaaatcctaatgg |
115 |
Q |
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| T |
6157415 |
attatacttttggtcatt---taaattacaaacgtcacacactttgctatattttgttgcatttgcagcttgttgcagtgaaacggttaaatcctaatgg |
6157319 |
T |
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| Q |
116 |
tggtcaaggttgtcaggaatttctgaccgaggttcttatgctatgcgtgttgcgtcattccaattatcttgttaagttaattggctattgcacaaatata |
215 |
Q |
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| T |
6157318 |
tggtcaaggttgtcaggaatttctgaccgaggttcttatgctatgcgtgttgcgtcattccaattatcttgttaagttaattggctattgcacaagtata |
6157219 |
T |
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| Q |
216 |
gatcaaaagcttttggt |
232 |
Q |
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| T |
6157218 |
gatcaaaagcttttggt |
6157202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 79 - 232
Target Start/End: Complemental strand, 56021111 - 56020961
Alignment:
| Q |
79 |
tgcagcttgttgcagtgaaacagttaaatcctaatggtggtcaaggttgtcaggaatttctgaccgaggttcttatgctatgcgtgttgcgtcattccaa |
178 |
Q |
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| T |
56021111 |
tgcagcttgttgcagtaaaacagttaaatcctgatggttgtcaaggctgtcacgaatttatgacagagcttgatattctaagtgtgctgcgtcatgc--- |
56021015 |
T |
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| Q |
179 |
ttatcttgttaagttaattggctattgcacaaatatagatcaaaagcttttggt |
232 |
Q |
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| T |
56021014 |
taatcttgttaagttaattggttattgcaccaatggagatcaaatgcttttggt |
56020961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 232
Target Start/End: Complemental strand, 54033450 - 54033298
Alignment:
| Q |
77 |
tttgcagcttgttgcagtgaaacagttaaatcctaatggtggtcaaggttgtcaggaatttctgaccgaggttcttatgctatgcgtgttgcgtcattcc |
176 |
Q |
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||||||||||||||| |||||||| |||| || | ||||| ||||||||| |||||||||| |||| |||||||||||| || || || | | |||||| |
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| T |
54033450 |
tttgcagcttgttgctgtgaaacaattaagtcatgatggtcgtcaaggttttcaggaatttgtgactgaggttcttatgttaagcttgctacatcattc- |
54033352 |
T |
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| Q |
177 |
aattatcttgttaagttaattggctattgcacaaatatagatcaaaagcttttggt |
232 |
Q |
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| T |
54033351 |
--taatctggttaagttaattggctactgcactgatggagatcaaaggcttttggt |
54033298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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