View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_58 (Length: 249)
Name: NF19828_low_58
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 7664566 - 7664782
Alignment:
| Q |
20 |
attttctggtttgttcttgacatgttcaagattatattagtttctttgtgccattcctttcttgttcatgtttttcatcaagtttggtgcatttgnnnnn |
119 |
Q |
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| T |
7664566 |
attttctggtttgttcttgacatgttcaagattatattagtttctttgtgccattcatttcttgttcatgtttttcatcaagtttggtgcatttgttttt |
7664665 |
T |
|
| Q |
120 |
nnatgaatcttcgtcattttcgggtttccaatcttgcaagttatcaagatttttgttatttcattaatcattctcaatttgattgattgtacgttttcat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
7664666 |
ttatgaatcttcgtcattttcgggtttccaatcttgcaagttatcaagatttttgttatttcattaatcattctcaatttgattgatt----gttttcat |
7664761 |
T |
|
| Q |
220 |
caacaatcttcgtatctctgc |
240 |
Q |
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||||||||||||||||||||| |
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| T |
7664762 |
caacaatcttcgtatctctgc |
7664782 |
T |
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