View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_61 (Length: 237)
Name: NF19828_low_61
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 222
Target Start/End: Original strand, 9319111 - 9319337
Alignment:
| Q |
2 |
atattcaaattagtggtttagaagtaaggtgcttaccttattcttcatgctattgggagttgctcct------gcttgctctcgtatgataatatgtttt |
95 |
Q |
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| T |
9319111 |
atattcaaattagtggtttagaagtaaggtgcttaccttattcttcatgctattgggagttgctcctttttctgcttgctctcgtatgataatatgtttt |
9319210 |
T |
|
| Q |
96 |
ctaatggcacacattataagtgaaccaaatatataaaatttgtgtcggatattatacatttaactttttaaagttcaaaatttatcattccaaatacaaa |
195 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9319211 |
ctaatggcacacgttataagtgaaccaaatatataaaatttgtgtcggatattatacattcaactttttaaagttcaaaatttatcattccaaatacaaa |
9319310 |
T |
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| Q |
196 |
gttctatttttacgctccttaatttgt |
222 |
Q |
| |
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|||||||||||||| |||||||||||| |
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| T |
9319311 |
gttctatttttacgttccttaatttgt |
9319337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 9349448 - 9349675
Alignment:
| Q |
1 |
tatattcaaattagtggtttagaagtaaggtgcttaccttattcttcatgctattgggagttgctcct------gcttgctctcgtatgataatatgttt |
94 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
9349448 |
tatattcaaattagtggtttagaagtaaggtgcttaccttattcttcatgctattgggagttgctcctttttctgcttgctctcgtatgataatatgttt |
9349547 |
T |
|
| Q |
95 |
tctaatggcacacattataagtgaaccaaatatataaaatttgtgtcggatattatacatttaactttttaaagttcaaaatttatcattccaaatacaa |
194 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
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| T |
9349548 |
tctaatggcacacgttataagtgaaccaaatatataaaatttgtgtcggatattatacattcaactttttcaagttcaaaatttatcattccaaatacaa |
9349647 |
T |
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| Q |
195 |
agttctatttttacgctccttaatttgt |
222 |
Q |
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||||||||||||||| |||||||||||| |
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| T |
9349648 |
agttctatttttacgttccttaatttgt |
9349675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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