View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_62 (Length: 237)
Name: NF19828_low_62
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 31831965 - 31831749
Alignment:
| Q |
1 |
tggaacaaacactgctgctttgagtacagcacttttcaacaatggcttaagctgtggctcttgctatgaaattaggtgtgctaatgaccatagatggtgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
31831965 |
tggaacaaacactgctgctttgagtacagcacttttcaacaatggcttaagctgtggctcttgctatgaaatcaggtgtgccaatgaccatagatggtgc |
31831866 |
T |
|
| Q |
101 |
cttcctggttccattgtggtcactgccaccaatttctgtccaccaaataatgccttaccaaacaatgatggtggttggtgtaaccctcctctccaacatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31831865 |
cttcctggttccattgtggtcactgccaccaatttctgtccaccaaacaatgccttaccaaacaatgatggtggttggtgtaaccctcctctccaacatt |
31831766 |
T |
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| Q |
201 |
ttgatcttgctcaacct |
217 |
Q |
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||||||||||||||||| |
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| T |
31831765 |
ttgatcttgctcaacct |
31831749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 18301599 - 18301383
Alignment:
| Q |
1 |
tggaacaaacactgctgctttgagtacagcacttttcaacaatggcttaagctgtggctcttgctatgaaattaggtgtgctaatgaccatagatggtgc |
100 |
Q |
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||||||||||||||||||||| || ||||| | ||||||| ||| ||||||||||| ||||| | ||| |||||||||||| ||||| || |||||| |
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| T |
18301599 |
tggaacaaacactgctgctttaagcacagctttgttcaacagtggtttaagctgtggttcttgttttgagattaggtgtgctggtgaccgtaaatggtgt |
18301500 |
T |
|
| Q |
101 |
cttcctggttccattgtggtcactgccaccaatttctgtccaccaaataatgccttaccaaacaatgatggtggttggtgtaaccctcctctccaacatt |
200 |
Q |
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| T |
18301499 |
cttcctggctctattttggtcactgctactaatttctgtcctccaaacactgccttgcctaataacaatggaggatggtgtaaccctcctttacaacact |
18301400 |
T |
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| Q |
201 |
ttgatcttgctcaacct |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
18301399 |
ttgatcttgctcaacct |
18301383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 32000305 - 32000101
Alignment:
| Q |
1 |
tggaacaaacactgctgctttgagtacagcacttttcaacaatggcttaagctgtggctcttgctatgaaattaggtgtgctaatgaccatagatggtgc |
100 |
Q |
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||||||||||||||| || | || ||||| | ||||||||||| || |||||||| |||| |||||||| ||||||| | ||| | ||||||||| |
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| T |
32000305 |
tggaacaaacactgcagcactaagcacagctttgttcaacaatggtttgagctgtggggcttgttatgaaatgaggtgtgttggtgatccaagatggtgc |
32000206 |
T |
|
| Q |
101 |
cttcctggttccattgtggtcactgccaccaatttctgtccaccaaataatgccttaccaaacaatgatggtggttggtgtaaccctcctctccaacatt |
200 |
Q |
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| | | ||||||| || |||||||| || || |||||||||||| ||| || |||||||| |||||||||||||||| ||||| || ||||| | |
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| T |
32000205 |
aaacatagcaccattgttgttactgccacaaacttttgtccaccaaattctgctttgccaaacaacaatggtggttggtgtaatcctcccctacaacact |
32000106 |
T |
|
| Q |
201 |
ttgat |
205 |
Q |
| |
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||||| |
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| T |
32000105 |
ttgat |
32000101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 11591550 - 11591654
Alignment:
| Q |
113 |
attgtggtcactgccaccaatttctgtccaccaaataatgccttaccaaacaatgatggtggttggtgtaaccctcctctccaacattttgatcttgctc |
212 |
Q |
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|
|||||||||||||| || ||||| ||||| ||||| ||||| | ||||| |||| ||||||||||||||||||||||| || ||||||||||| ||| |
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| T |
11591550 |
attgtggtcactgcaacaaatttttgtcctccaaacaatgcacttccaaataatgcaggtggttggtgtaaccctcctcttcatcattttgatctctctc |
11591649 |
T |
|
| Q |
213 |
aacct |
217 |
Q |
| |
|
||||| |
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| T |
11591650 |
aacct |
11591654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 27477585 - 27477415
Alignment:
| Q |
35 |
ttcaacaatggcttaagctgtggctcttgctatgaaattaggtgtgctaatgaccatagatggtgccttcctggttccattgtggtcactgccaccaatt |
134 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| || || | |||| | ||||||||| |||||||| ||| | || ||||| || |||| |
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| T |
27477585 |
ttcaacaatggtttaagctgtggatcttgctatgaaatgagatgcaatgatgatccaagatggtgcaaacctggttctattattgttactgctacaaatt |
27477486 |
T |
|
| Q |
135 |
tctgtccaccaaataatgccttaccaaacaatgatggtggttggtgtaaccctcctctccaacattttgat |
205 |
Q |
| |
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| |||||||||||| | || || ||||| ||||||||||||||||||||||| | |||||||||||| |
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| T |
27477485 |
tttgtccaccaaatccatctttgcctaacaacaatggtggttggtgtaaccctcctttgcaacattttgat |
27477415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 27488810 - 27488640
Alignment:
| Q |
35 |
ttcaacaatggcttaagctgtggctcttgctatgaaattaggtgtgctaatgaccatagatggtgccttcctggttccattgtggtcactgccaccaatt |
134 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| || || | |||| | ||||||||| |||||||| ||| | |||||||| || |||| |
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| T |
27488810 |
ttcaacaatggtttaagctgtggatcttgctatgaaatgagatgcaatgatgatccaagatggtgcaaacctggttctattattgtcactgctacaaatt |
27488711 |
T |
|
| Q |
135 |
tctgtccaccaaataatgccttaccaaacaatgatggtggttggtgtaaccctcctctccaacattttgat |
205 |
Q |
| |
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| |||||||||||| | || || ||||| |||||||||||||||| |||||| | |||||||||||| |
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| T |
27488710 |
tttgtccaccaaatccatctttgcctaacaacaatggtggttggtgtaatcctcctttgcaacattttgat |
27488640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 3814925 - 3814816
Alignment:
| Q |
35 |
ttcaacaatggcttaagctgtggctcttgctatgaaattaggtgtgctaatgaccatagatggtgccttcctggttccattgtggtcactgccaccaatt |
134 |
Q |
| |
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||||||||||| || || ||||| | ||||||||||||| ||||||| ||||| | |||||| || | ||| |||||||| || |||||||| |||| |
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| T |
3814925 |
ttcaacaatggtttgagttgtggtgcatgctatgaaattaaatgtgctagtgacccaaaatggtgtctccatggctccattgttgttactgccactaatt |
3814826 |
T |
|
| Q |
135 |
tctgtccacc |
144 |
Q |
| |
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|||||||||| |
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|
| T |
3814825 |
tctgtccacc |
3814816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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