View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_65 (Length: 229)
Name: NF19828_low_65
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_65 |
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Alignment Details
Target: chr5 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 109 - 220
Target Start/End: Complemental strand, 38899478 - 38899367
Alignment:
| Q |
109 |
atatacaattaaatgcaacataaaaaccgatagatcgtttttccgttaatagcactaatgacgttattaatcaagatcttgtaagaatttcaactatatg |
208 |
Q |
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| T |
38899478 |
atatacaattaaatgcaacataaaaaccgatagatcgtttttccgttaatagcactaatgacgttattaatcaagatcttgtaagaatttcaactatata |
38899379 |
T |
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| Q |
209 |
ttgatcatgatg |
220 |
Q |
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||||||| |||| |
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| T |
38899378 |
ttgatcaagatg |
38899367 |
T |
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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 56
Target Start/End: Complemental strand, 38899842 - 38899812
Alignment:
| Q |
26 |
aatccacaacaattataacaatatttgacac |
56 |
Q |
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| T |
38899842 |
aatccacaacaattataacaatatttgacac |
38899812 |
T |
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