View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19828_low_68 (Length: 219)

Name: NF19828_low_68
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19828_low_68
NF19828_low_68
[»] chr3 (28 HSPs)
chr3 (17-206)||(6140099-6140288)
chr3 (17-206)||(6263495-6263684)
chr3 (17-206)||(6235860-6236049)
chr3 (17-206)||(6257015-6257204)
chr3 (17-206)||(13275431-13275620)
chr3 (17-210)||(6166706-6166899)
chr3 (17-206)||(6243130-6243319)
chr3 (17-206)||(6897901-6898090)
chr3 (17-206)||(6914914-6915103)
chr3 (17-206)||(6593380-6593569)
chr3 (17-206)||(6880329-6880518)
chr3 (17-206)||(6724106-6724295)
chr3 (17-171)||(7747850-7748004)
chr3 (44-181)||(6941777-6941914)
chr3 (53-181)||(8469401-8469529)
chr3 (59-181)||(6450864-6450986)
chr3 (17-94)||(6482010-6482087)
chr3 (133-181)||(6730866-6730914)
chr3 (17-181)||(7585712-7585876)
chr3 (74-181)||(8571033-8571140)
chr3 (17-179)||(4390940-4391102)
chr3 (132-173)||(5261784-5261825)
chr3 (146-179)||(5265922-5265955)
chr3 (133-181)||(8587764-8587812)
chr3 (56-179)||(8452487-8452610)
chr3 (146-179)||(5248017-5248050)
chr3 (132-181)||(6782471-6782520)
chr3 (136-180)||(6482129-6482173)
[»] scaffold0425 (2 HSPs)
scaffold0425 (119-206)||(13621-13708)
scaffold0425 (17-64)||(13561-13608)
[»] chr7 (1 HSPs)
chr7 (136-181)||(6575469-6575514)


Alignment Details
Target: chr3 (Bit Score: 154; Significance: 7e-82; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 6140288 - 6140099
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattac 116  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||     
T  6140288 gtttgttcaaactcaaatctctgaaacaattcagtcttagtgatgattttgaaatcttggaatcctttccagaggagagtctgctgccatcaactattaa 6140189  T
Q  117 ctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 206  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6140188 ctctcttgagttgacaaattgttcaaacctaaaaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatatattga 6140099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 6263684 - 6263495
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattac 116  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  6263684 gtttgttccaactcaaatctctgaaacaattcagtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattaa 6263585  T
Q  117 ctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 206  Q
    |||| ||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||  ||||| ||||||||||    
T  6263584 ctcttttgagttgacaaattgtcccaacctaagaaaaataaactgcaagggtcttctccacctcacttcactcaaatctctatatattga 6263495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 6236049 - 6235860
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattac 116  Q
    |||||||||||||||||||| | ||||||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  6236049 gtttgttccaactcaaatctttaaaacaattgagtgttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaactattaa 6235950  T
Q  117 ctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 206  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6235949 ctctcttgagttgacaaattgttccaacctaagaaaaatcaactacaagggtcttctccacctcacttcacttgaatctctatatattga 6235860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 6257204 - 6257015
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattac 116  Q
    ||||||||||||||||||||||||||||||||  ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||     
T  6257204 gtttgttccaactcaaatctctgaaacaattcactcttagtgacgattttgaaatcttcgaatcctttccagaggagagtatgctgccatcaactattaa 6257105  T
Q  117 ctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 206  Q
    |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6257104 ctctcttgagttgacaaattgttcaaacctaacaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatatattga 6257015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 13275431 - 13275620
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattac 116  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| |||||     
T  13275431 gtttgttcaaactcaaatctctgaaacaattcagtcttagtgatgattttgaaatctttgagtcctttccagaagagagtatgctgccatcaactattaa 13275530  T
Q  117 ctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 206  Q
    |||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13275531 ctctcttgagttgacaaattgttcaaacctaagaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatatattga 13275620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 210
Target Start/End: Complemental strand, 6166899 - 6166706
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattac 116  Q
    |||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||| | || ||| ||| |||||| |||||||||||||||||||||    
T  6166899 gtttgttcaaactcaaatctctgaaacaattaagtcttagtgatgattttgaaatcttcgcattcttgccaaaggagactatgctgccatcaagtattac 6166800  T
Q  117 ctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattgatgat 210  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||    
T  6166799 ctctcttgagttgacaaattgttccaacctaagaaaaataaactacaacggtcttttccacctcacttcacttgaatctctatatattgatgat 6166706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 6243319 - 6243130
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattac 116  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||     
T  6243319 gtttgttccaactcaaatctctgaaacaattcagtcttagtgatgattttgaaatcttcgagtcctttccagaggagagtatgctgccatcaagtattaa 6243220  T
Q  117 ctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 206  Q
    ||||||||| |||| ||||||||||  ||||| || |||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  6243219 ctctcttgatttgaaaaattgttcctgcctaaaaaaaataaactgcaagggtcttctccacctcacttcacttgaatctctatatattga 6243130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 6898090 - 6897901
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattac 116  Q
    |||||||||||||||| ||||||||||| ||| || | ||||||||||||||||||||||| |||||||| ||| ||||| |||||||||||| ||| |     
T  6898090 gtttgttccaactcaattctctgaaacagttcagtgtaagtgatgattttgaaatcttggagtcctttccggagaagagtctgctgccatcaactatgaa 6897991  T
Q  117 ctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 206  Q
     ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  6897990 atctcttgagttaacaaattgttccaacctaagaataataaactataagggtcttctccacctcacttcacttgaatctctatatattga 6897901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 6915103 - 6914914
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattac 116  Q
    |||||||||||||||| ||||| |||||||| ||| |||||||||||||  | |||||||| |||||||||||||||||| |||||||||||| |||||     
T  6915103 gtttgttccaactcaattctctaaaacaattatgtgttagtgatgatttgaatatcttggagtcctttccagaggagagtctgctgccatcaactattaa 6915004  T
Q  117 ctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 206  Q
     ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  6915003 atctctcgagttgacaaattgttccaacctaaaaataataaactacaagggtcttctccacctcacttcgcttgaatctctatatattga 6914914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 6593380 - 6593569
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattac 116  Q
    |||||||||||||| | ||||||||||||||| || |||||||||||||| |||||||||| |||||||| ||||||||| |||| ||||||| |||||     
T  6593380 gtttgttccaactcgattctctgaaacaattcagtgttagtgatgattttcaaatcttggagtcctttccggaggagagtctgcttccatcaactattaa 6593479  T
Q  117 ctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 206  Q
     ||  ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  6593480 atcctttgagttaacaaattgttccaacctaagaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatgtattga 6593569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 6880518 - 6880329
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattac 116  Q
    |||||||||||||||| ||||||||||||||| || || |||||||||| ||||||||||| |||||||| ||||||||| |||||||||||| ||| |     
T  6880518 gtttgttccaactcaattctctgaaacaattcagtgttggtgatgatttggaaatcttggagtcctttccggaggagagtctgctgccatcaactatgaa 6880419  T
Q  117 ctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 206  Q
     ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||| ||| ||||||    
T  6880418 atctcttgagttaacaaattgttccaacctaagaataataaactacaagggtcttctccacatgacctcacttgaatctctatgtattga 6880329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 17 - 206
Target Start/End: Original strand, 6724106 - 6724295
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattac 116  Q
    |||||||||||||| | ||||||||||||||| || |||||||||||||| ||||||| || |||||||| ||||||||| |||| ||||||| |||||     
T  6724106 gtttgttccaactcgattctctgaaacaattcagtgttagtgatgattttcaaatcttagagtcctttccggaggagagtctgcttccatcaactattaa 6724205  T
Q  117 ctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 206  Q
     ||  ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  6724206 atcctttgagttaacaaattgttccaacctaagaaaaataaactacaagggtcttctccacctcacttcacttgaatctctatgtattga 6724295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 7748004 - 7747850
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattac 116  Q
    |||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| ||||||    
T  7748004 gtttgttccaactcaaatctctaaaacaattatgtgttagtgatgattttgaaatcttggagtcctttccggaggagagtctgctgccatcaactattac 7747905  T
Q  117 ctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtctt 171  Q
     ||||||||||| | |||||||||||||||||||| |||||||||||||||||||    
T  7747904 atctcttgagttaaaaaattgttccaacctaagaagaataaactacaagggtctt 7747850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 44 - 181
Target Start/End: Complemental strand, 6941914 - 6941777
Alignment:
Q  44 aattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaa 143  Q
    |||||| | |||||||||| |||||||   |||| ||||| |||||||||| | |||||||| ||||| ||||   |||| | |||| ||||||||| ||    
T  6941914 aattctctgttagtgatgagtttgaaaatgtggagtccttcccagaggagaatctgctgccaccaagtcttactgatcttaatttgagaaattgttcaaa 6941815  T
Q  144 cctaagaataataaactacaagggtcttctccacctca 181  Q
     ||||||||||| ||| | |||||| ||||||||||||    
T  6941814 gctaagaataatgaacaaaaagggttttctccacctca 6941777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 53 - 181
Target Start/End: Complemental strand, 8469529 - 8469401
Alignment:
Q  53 ttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaat 152  Q
    |||| ||||| ||||||| | | || ||||| |||||||||||| |||||||| ||| | |||| | |||| | ||||  |||||||| || ||||||||    
T  8469529 ttagcgatgagtttgaaaacgtagagtccttcccagaggagagtctgctgccaccaactcttacgtatcttaatttgaataattgttcaaagctaagaat 8469430  T
Q  153 aataaactacaagggtcttctccacctca 181  Q
    ||| ||| |||||||| ||||||||||||    
T  8469429 aatgaacaacaagggttttctccacctca 8469401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 59 - 181
Target Start/End: Original strand, 6450864 - 6450986
Alignment:
Q  59 atgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaa 158  Q
    |||| ||||||| | |||| ||||| || ||||||| | |||||||| ||| | || || | ||| | ||||  |||||||| |||||||||||||| ||    
T  6450864 atgactttgaaaacgtggagtccttccccgaggagaatctgctgccaccaactcttcccacccttcaattgaataattgttcaaacctaagaataatgaa 6450963  T
Q  159 ctacaagggtcttctccacctca 181  Q
    |||||||||| ||||||||||||    
T  6450964 ctacaagggttttctccacctca 6450986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 6482010 - 6482087
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggaga 94  Q
    |||||||||||||||| ||||||||| | ||  |  |||||||||| ||||||| | |||||||||||||||||||||    
T  6482010 gtttgttccaactcaattctctgaaagagtttagagttagtgatgagtttgaaaacgtggaatcctttccagaggaga 6482087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 6730866 - 6730914
Alignment:
Q  133 aattgttccaacctaagaataataaactacaagggtcttctccacctca 181  Q
    |||||||| |||||||||||||| |||||||||||| ||||||||||||    
T  6730866 aattgttcaaacctaagaataatgaactacaagggttttctccacctca 6730914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 181
Target Start/End: Complemental strand, 7585876 - 7585712
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattac 116  Q
    |||||||||||||||| ||||||| |   ||| || |||||||||| ||||||| | |||| || || |||||||||| | |||||||| ||| ||||      
T  7585876 gtttgttccaactcaattctctgagagctttcggtgttagtgatgagtttgaaaacgtggagtcgttcccagaggagaatctgctgccaccaactattca 7585777  T
Q  117 ctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctca 181  Q
    || |||   |||  | |||||||| || ||||||||||| ||| | |||||| ||||||||||||    
T  7585776 ctttctctggttctctaattgttcaaagctaagaataatgaacaaaaagggttttctccacctca 7585712  T

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Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 181
Target Start/End: Original strand, 8571033 - 8571140
Alignment:
Q  74 tggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttct 173  Q
    |||||||||| |||||||||||| |||||||| ||| | ||  | |||||   |||   |||||||| || ||||||||||| ||||||||||| |||||    
T  8571033 tggaatccttcccagaggagagtttgctgccaccaactcttcacactctttgtttgtataattgttcaaagctaagaataatgaactacaagggacttct 8571132  T
Q  174 ccacctca 181  Q
    ||||||||    
T  8571133 ccacctca 8571140  T

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Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 179
Target Start/End: Original strand, 4390940 - 4391102
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattac 116  Q
    |||||||||||||||| ||||| ||| | |||  | || ||||||| |||||||   |||| ||||| |||||||||||| |||| |||   | ||||      
T  4390940 gtttgttccaactcaattctctaaaagatttcattgttggtgatgactttgaaaatgtggagtccttcccagaggagagtctgctaccagataatattga 4391039  T
Q  117 ctctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacct 179  Q
    |||||||   |||| | | ||||| ||  ||||||||||||||| ||||||||||||||||||    
T  4391040 ctctcttagcttgagagaatgttcaaagttaagaataataaactgcaagggtcttctccacct 4391102  T

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Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 173
Target Start/End: Complemental strand, 5261825 - 5261784
Alignment:
Q  132 aaattgttccaacctaagaataataaactacaagggtcttct 173  Q
    ||||||||| || |||||||||||||||||||||||||||||    
T  5261825 aaattgttcaaagctaagaataataaactacaagggtcttct 5261784  T

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Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 5265955 - 5265922
Alignment:
Q  146 taagaataataaactacaagggtcttctccacct 179  Q
    ||||||||||||||||||||||||||||||||||    
T  5265955 taagaataataaactacaagggtcttctccacct 5265922  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 181
Target Start/End: Complemental strand, 8587812 - 8587764
Alignment:
Q  133 aattgttccaacctaagaataataaactacaagggtcttctccacctca 181  Q
    |||||||| || |||||||||||||||| ||| ||||||||||||||||    
T  8587812 aattgttcaaagctaagaataataaactgcaaaggtcttctccacctca 8587764  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 179
Target Start/End: Complemental strand, 8452610 - 8452487
Alignment:
Q  56 gtgatgattttgaaatcttggaatcctttccagaggagagtatgctgccatcaagtattacctctcttgagttgacaaattgttccaacctaagaataat 155  Q
    ||||||||||||||| | |||| ||||||||| |||||||| |||||||| ||| | || | | |||| | ||||  || ||||| || || ||||||||    
T  8452610 gtgatgattttgaaaacgtggagtcctttccaaaggagagtctgctgccaccaactctttcgtatcttaatttgaataactgttcaaagctcagaataat 8452511  T
Q  156 aaactacaagggtcttctccacct 179  Q
     ||| || ||||| ||||||||||    
T  8452510 gaacaacgagggttttctccacct 8452487  T

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Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 146 - 179
Target Start/End: Complemental strand, 5248050 - 5248017
Alignment:
Q  146 taagaataataaactacaagggtcttctccacct 179  Q
    ||||||||||||||| ||||||||||||||||||    
T  5248050 taagaataataaacttcaagggtcttctccacct 5248017  T

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Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 6782471 - 6782520
Alignment:
Q  132 aaattgttccaacctaagaataataaactacaagggtcttctccacctca 181  Q
    ||||||||| || ||||||||||| ||| |||||||| ||||||||||||    
T  6782471 aaattgttcaaagctaagaataatgaacaacaagggttttctccacctca 6782520  T

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Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 180
Target Start/End: Original strand, 6482129 - 6482173
Alignment:
Q  136 tgttccaacctaagaataataaactacaagggtcttctccacctc 180  Q
    ||||| || ||||||||||| |||||||||||| |||||||||||    
T  6482129 tgttcaaagctaagaataatgaactacaagggttttctccacctc 6482173  T

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Target: scaffold0425 (Bit Score: 60; Significance: 9e-26; HSPs: 2)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 119 - 206
Target Start/End: Original strand, 13621 - 13708
Alignment:
Q  119 ctcttgagttgacaaattgttccaacctaagaataataaactacaagggtcttctccacctcacttcacttgaatctttatatattga 206  Q
    |||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| |||||||||  ||||||||| ||||||||||    
T  13621 ctcttgagttgaaaaattgttccaatctaggaataataaactacaagggtcttctctacctcactttgcttgaatctctatatattga 13708  T

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Target: scaffold0425; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 64
Target Start/End: Original strand, 13561 - 13608
Alignment:
Q  17 gtttgttccaactcaaatctctgaaacaattctgtcttagtgatgatt 64  Q
    |||||||||||||||| ||||||||||||||| || ||||||||||||    
T  13561 gtttgttccaactcaattctctgaaacaattcagtgttagtgatgatt 13608  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 136 - 181
Target Start/End: Original strand, 6575469 - 6575514
Alignment:
Q  136 tgttccaacctaagaataataaactacaagggtcttctccacctca 181  Q
    ||||| || ||||||||||| |||||||||||||||||||||||||    
T  6575469 tgttcaaagctaagaataatgaactacaagggtcttctccacctca 6575514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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