View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19828_low_7 (Length: 572)

Name: NF19828_low_7
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19828_low_7
NF19828_low_7
[»] chr6 (21 HSPs)
chr6 (19-533)||(8850473-8850987)
chr6 (342-422)||(28112172-28112252)
chr6 (397-523)||(12988432-12988557)
chr6 (342-435)||(31071941-31072033)
chr6 (345-425)||(6512892-6512972)
chr6 (342-422)||(28108196-28108276)
chr6 (390-422)||(2378914-2378946)
chr6 (390-422)||(3597189-3597221)
chr6 (390-422)||(11401941-11401973)
chr6 (390-422)||(13004873-13004905)
chr6 (390-422)||(26942842-26942874)
chr6 (390-422)||(28665671-28665703)
chr6 (390-422)||(30655128-30655160)
chr6 (345-420)||(2845941-2846016)
chr6 (390-421)||(5259621-5259652)
chr6 (397-523)||(13021561-13021686)
chr6 (392-422)||(11247448-11247478)
chr6 (390-422)||(10289657-10289689)
chr6 (390-422)||(11126103-11126135)
chr6 (390-422)||(11188323-11188355)
chr6 (390-422)||(22561571-22561603)
[»] chr3 (41 HSPs)
chr3 (120-523)||(27298756-27299165)
chr3 (290-523)||(27308315-27308546)
chr3 (332-508)||(27308887-27309063)
chr3 (241-443)||(8099174-8099373)
chr3 (342-523)||(18542270-18542452)
chr3 (397-523)||(11636608-11636733)
chr3 (390-526)||(22360214-22360349)
chr3 (342-422)||(35751174-35751254)
chr3 (390-425)||(29344266-29344301)
chr3 (390-523)||(45896148-45896281)
chr3 (345-526)||(22993989-22994168)
chr3 (369-422)||(7486317-7486370)
chr3 (389-422)||(27091661-27091694)
chr3 (369-422)||(30690482-30690535)
chr3 (342-422)||(47051215-47051295)
chr3 (390-422)||(2873332-2873364)
chr3 (390-422)||(3840284-3840316)
chr3 (390-422)||(11190294-11190326)
chr3 (390-422)||(20729041-20729073)
chr3 (390-422)||(24125267-24125299)
chr3 (390-422)||(24128544-24128576)
chr3 (390-422)||(25584455-25584487)
chr3 (24-76)||(27299232-27299284)
chr3 (390-422)||(32287718-32287750)
chr3 (390-422)||(41976783-41976815)
chr3 (390-422)||(43926603-43926635)
chr3 (390-422)||(47054693-47054725)
chr3 (390-422)||(50461943-50461975)
chr3 (390-422)||(54723509-54723541)
chr3 (369-422)||(30220403-30220456)
chr3 (269-318)||(6030457-6030506)
chr3 (390-526)||(22370117-22370252)
chr3 (452-512)||(282495-282555)
chr3 (86-118)||(7167804-7167836)
chr3 (390-422)||(17040416-17040448)
chr3 (390-422)||(19301899-19301931)
chr3 (390-422)||(19305083-19305115)
chr3 (390-422)||(22783360-22783392)
chr3 (390-422)||(22787724-22787756)
chr3 (390-422)||(28008464-28008496)
chr3 (390-422)||(52309952-52309984)
[»] scaffold0187 (1 HSPs)
scaffold0187 (247-512)||(31249-31514)
[»] chr1 (17 HSPs)
chr1 (247-512)||(37907563-37907828)
chr1 (342-512)||(7635281-7635451)
chr1 (342-523)||(27332077-27332258)
chr1 (390-512)||(34066758-34066880)
chr1 (369-522)||(34732667-34732819)
chr1 (342-436)||(6071348-6071441)
chr1 (342-422)||(27536693-27536773)
chr1 (390-422)||(20398537-20398569)
chr1 (390-422)||(21018873-21018905)
chr1 (390-422)||(23022331-23022363)
chr1 (390-422)||(28110741-28110773)
chr1 (390-422)||(31204522-31204554)
chr1 (390-422)||(37184271-37184303)
chr1 (390-422)||(41058709-41058741)
chr1 (390-422)||(45961152-45961184)
chr1 (392-422)||(45941102-45941132)
chr1 (390-422)||(11668433-11668465)
[»] scaffold0034 (1 HSPs)
scaffold0034 (246-523)||(48709-48986)
[»] chr2 (28 HSPs)
chr2 (251-524)||(35521671-35521941)
chr2 (259-342)||(11187611-11187694)
chr2 (369-511)||(22630486-22630627)
chr2 (342-435)||(31427938-31428030)
chr2 (342-422)||(9966712-9966792)
chr2 (342-422)||(33310283-33310363)
chr2 (342-422)||(45453491-45453571)
chr2 (342-422)||(45456778-45456858)
chr2 (369-422)||(43723345-43723398)
chr2 (390-422)||(8888300-8888332)
chr2 (390-422)||(9185832-9185864)
chr2 (390-422)||(9189061-9189093)
chr2 (390-422)||(11348304-11348336)
chr2 (390-422)||(13972302-13972334)
chr2 (390-422)||(22020733-22020765)
chr2 (390-422)||(25960097-25960129)
chr2 (390-422)||(27266453-27266485)
chr2 (390-422)||(30190001-30190033)
chr2 (390-422)||(38015183-38015215)
chr2 (390-422)||(40781137-40781169)
chr2 (390-422)||(42369119-42369151)
chr2 (376-443)||(6298117-6298183)
chr2 (392-422)||(5105393-5105423)
chr2 (389-419)||(24234759-24234789)
chr2 (342-416)||(31430104-31430178)
chr2 (392-422)||(43208298-43208328)
chr2 (389-422)||(24238031-24238064)
chr2 (390-418)||(37280089-37280117)
[»] chr5 (22 HSPs)
chr5 (359-522)||(563530-563692)
chr5 (335-512)||(31575045-31575222)
chr5 (427-523)||(18765947-18766044)
chr5 (403-523)||(21914818-21914937)
chr5 (342-422)||(17664187-17664267)
chr5 (247-336)||(18766058-18766147)
chr5 (342-422)||(7624737-7624817)
chr5 (342-422)||(20055409-20055489)
chr5 (390-523)||(41877071-41877204)
chr5 (369-422)||(26896011-26896064)
chr5 (369-422)||(26753109-26753162)
chr5 (390-422)||(7270699-7270731)
chr5 (390-422)||(14016546-14016578)
chr5 (390-422)||(18952376-18952408)
chr5 (390-422)||(22129948-22129980)
chr5 (390-422)||(30066025-30066057)
chr5 (390-422)||(33551804-33551836)
chr5 (390-422)||(34831446-34831478)
chr5 (390-422)||(41306934-41306966)
chr5 (390-425)||(18239900-18239935)
chr5 (390-422)||(4099929-4099961)
chr5 (390-422)||(18032141-18032173)
[»] chr7 (17 HSPs)
chr7 (255-523)||(24917731-24917998)
chr7 (257-522)||(2090144-2090408)
chr7 (342-422)||(14683856-14683936)
chr7 (342-435)||(6603080-6603172)
chr7 (390-523)||(7227197-7227330)
chr7 (390-445)||(18562923-18562977)
chr7 (344-422)||(11398438-11398516)
chr7 (390-422)||(9405927-9405959)
chr7 (390-422)||(9865139-9865171)
chr7 (390-422)||(17730484-17730516)
chr7 (342-436)||(13842262-13842355)
chr7 (390-435)||(16165418-16165462)
chr7 (390-435)||(48645144-48645188)
chr7 (390-422)||(4596421-4596453)
chr7 (390-422)||(4695194-4695226)
chr7 (390-422)||(23225318-23225350)
chr7 (390-422)||(23234471-23234503)
[»] scaffold0233 (1 HSPs)
scaffold0233 (345-523)||(9575-9753)
[»] scaffold0045 (1 HSPs)
scaffold0045 (342-422)||(89404-89484)
[»] chr8 (12 HSPs)
chr8 (335-422)||(7944352-7944439)
chr8 (342-422)||(36711063-36711143)
chr8 (390-435)||(22174319-22174363)
chr8 (390-422)||(12582688-12582720)
chr8 (390-422)||(16953456-16953488)
chr8 (390-422)||(18824802-18824834)
chr8 (390-422)||(18826295-18826327)
chr8 (369-422)||(2560248-2560301)
chr8 (390-422)||(5614135-5614167)
chr8 (390-422)||(5980720-5980752)
chr8 (390-422)||(30784610-30784642)
chr8 (390-418)||(38248811-38248839)
[»] scaffold0002 (1 HSPs)
scaffold0002 (345-422)||(118854-118931)
[»] chr4 (32 HSPs)
chr4 (390-526)||(34018085-34018220)
chr4 (342-422)||(15405492-15405572)
chr4 (342-422)||(56195161-56195241)
chr4 (390-526)||(27691447-27691583)
chr4 (465-523)||(37740069-37740126)
chr4 (369-422)||(15436877-15436930)
chr4 (465-526)||(33493998-33494059)
chr4 (342-435)||(33926601-33926693)
chr4 (390-435)||(34320313-34320357)
chr4 (390-435)||(44809351-44809395)
chr4 (342-435)||(46955874-46955966)
chr4 (390-422)||(15163874-15163906)
chr4 (369-421)||(15430264-15430316)
chr4 (390-422)||(19820410-19820442)
chr4 (390-422)||(19827172-19827204)
chr4 (390-422)||(24150354-24150386)
chr4 (390-422)||(27677462-27677494)
chr4 (390-422)||(29324507-29324539)
chr4 (390-422)||(38283896-38283928)
chr4 (390-422)||(39501330-39501362)
chr4 (390-422)||(40903491-40903523)
chr4 (390-422)||(44164465-44164497)
chr4 (390-422)||(48637187-48637219)
chr4 (390-422)||(52006938-52006970)
chr4 (390-422)||(52531343-52531375)
chr4 (390-422)||(53094189-53094221)
chr4 (391-422)||(8877909-8877940)
chr4 (392-422)||(48415937-48415967)
chr4 (390-420)||(56198535-56198565)
chr4 (345-422)||(8448950-8449027)
chr4 (369-418)||(48014459-48014508)
chr4 (390-422)||(12782587-12782619)
[»] scaffold1684 (1 HSPs)
scaffold1684 (342-422)||(48-128)
[»] scaffold0250 (1 HSPs)
scaffold0250 (390-425)||(19078-19113)
[»] scaffold0757 (1 HSPs)
scaffold0757 (390-422)||(5035-5067)
[»] scaffold0427 (1 HSPs)
scaffold0427 (390-422)||(4196-4228)
[»] scaffold0024 (1 HSPs)
scaffold0024 (390-422)||(84923-84955)
[»] scaffold0520 (2 HSPs)
scaffold0520 (394-422)||(4387-4415)
scaffold0520 (394-422)||(8626-8654)
[»] scaffold0126 (1 HSPs)
scaffold0126 (390-422)||(82-114)


Alignment Details
Target: chr6 (Bit Score: 479; Significance: 0; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 19 - 533
Target Start/End: Complemental strand, 8850987 - 8850473
Alignment:
Q  19 gtagcaatttgagacaaccaggggtgtgaaaagtaataaaatatgaacaacaagaaattgttgcacggtgacatgattttggcatcgtgacacaatttca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |    
T  8850987 gtagcaatttgagacaaccaggggtgtgaaaagtaataaaatatgaacaacaagaaattgttgcacggtgacatgattttggcattgtgacacaatttta 8850888  T
Q  119 tgattttgtaatgcgtgacacgattttgaagatggttcgagcaggaatttaggtttagagatggaattgtggcacgattactgagaattgtgacacgatt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8850887 tgattttgtaatgcgtgacacgattttgaagatggttcgagcaggaatttaggtttagagatggaattgtggcacgattactgagaattgtgacacgatt 8850788  T
Q  219 ttgatcacaggaatttcctattaacctgtttcagaaataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggt 318  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  8850787 ttgatcacatgaatttcctattaacctgttttagaaataagggttcttaattttggagatctaaaagacgattttgagagcacaagactgaagaggtggt 8850688  T
Q  319 cattccatcccactcatagtcaatttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagatt 418  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8850687 cattccatccctctcatagtcaatttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagatt 8850588  T
Q  419 aggtttggagatgaatctgatgtaacctgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttt 518  Q
    ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8850587 aggtttgaagatgaatctgatgtaacctgtttgaaacatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttt 8850488  T
Q  519 taatgtttatagatt 533  Q
    |||| ||||||||||    
T  8850487 taatatttatagatt 8850473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 28112252 - 28112172
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| ||||| |||||||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  28112252 tttatgtatgttttaattctttaattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 28112172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 397 - 523
Target Start/End: Complemental strand, 12988557 - 12988432
Alignment:
Q  397 gtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatattaatcta 495  Q
    |||||||||||||||||||||||||| | ||||||| |||||||||| |||  |||||  || | ||| |||| |||||||  || ||||||| ||||||    
T  12988557 gtagctaaatctcttagagattaggtct-gagatgattctgatgtaaccctaattgaaccatgttgctgtgaagctctatt-attgtgaatatcaatcta 12988460  T
Q  496 gttttattcaattcaatagtttttaatg 523  Q
    |||||||||||||||||| || ||||||    
T  12988459 gttttattcaattcaatatttcttaatg 12988432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 342 - 435
Target Start/End: Original strand, 31071941 - 31072033
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatc 435  Q
    ||||||||||| ||||| |||  ||| ||||||||||||||||     ||||||||||||||||||||||||||||||||| | ||||||||||    
T  31071941 tttatgtatgttttaattcttccatttattatgttatttgtaaactcaattatgagtagctaaatctcttagagattaggtct-gagatgaatc 31072033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 345 - 425
Target Start/End: Original strand, 6512892 - 6512972
Alignment:
Q  345 atgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttg 425  Q
    |||||||| ||||| || | ||| |||||| |||||||||     ||||||||||||||||||||||||||||||||||||    
T  6512892 atgtatgttttaattctattattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggtttg 6512972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 28108276 - 28108196
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaat-tcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| ||||| |||| ||| |||||| |||||||||  ||| ||||||||||||||||||||||| | |||||||    
T  28108276 tttatgtatgttttaattctttcattgattatgctatttgtaaactcg-attatgagtagctaaatctcttatatattaggt 28108196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 2378914 - 2378946
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  2378914 attatgagtagctaaatctcttagagattaggt 2378946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 3597221 - 3597189
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  3597221 attatgagtagctaaatctcttagagattaggt 3597189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 11401941 - 11401973
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  11401941 attatgagtagctaaatctcttagagattaggt 11401973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 13004873 - 13004905
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  13004873 attatgagtagctaaatctcttagagattaggt 13004905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 26942874 - 26942842
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  26942874 attatgagtagctaaatctcttagagattaggt 26942842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 28665703 - 28665671
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  28665703 attatgagtagctaaatctcttagagattaggt 28665671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 30655128 - 30655160
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  30655128 attatgagtagctaaatctcttagagattaggt 30655160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 420
Target Start/End: Original strand, 2845941 - 2846016
Alignment:
Q  345 atgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattag 420  Q
    |||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||    
T  2845941 atgtatgttttaattcttatattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattag 2846016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 421
Target Start/End: Original strand, 5259621 - 5259652
Alignment:
Q  390 attatgagtagctaaatctcttagagattagg 421  Q
    ||||||||||||||||||||||||||||||||    
T  5259621 attatgagtagctaaatctcttagagattagg 5259652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 523
Target Start/End: Complemental strand, 13021686 - 13021561
Alignment:
Q  397 gtagctaaatctcttagagattaggtttggagatgaatctgatgtaacc-tgtttgaaatatatggctatgaaactctattgcttatgaatattaatcta 495  Q
    |||||||||||||||||||  ||||| || |||||| |||||||||||| |  |||||  || | | | |||| |||||||  || ||||||| ||||||    
T  13021686 gtagctaaatctcttagaggataggtctg-agatgattctgatgtaaccctaattgaaccatgttgttgtgaagctctatta-ttgtgaatatcaatcta 13021589  T
Q  496 gttttattcaattcaatagtttttaatg 523  Q
    |||||||||||||||||| || ||||||    
T  13021588 gttttattcaattcaatatttcttaatg 13021561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 422
Target Start/End: Original strand, 11247448 - 11247478
Alignment:
Q  392 tatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||    
T  11247448 tatgagtagctaaatctcttagagattaggt 11247478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 10289657 - 10289689
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||| ||||||||||||||||||||||    
T  10289657 attatgagtaactaaatctcttagagattaggt 10289689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 11126135 - 11126103
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||| ||||||||||||||||||||||||||    
T  11126135 attatgggtagctaaatctcttagagattaggt 11126103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 11188355 - 11188323
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||| ||||    
T  11188355 attatgagtagctaaatctcttagagatcaggt 11188323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 22561603 - 22561571
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||||||||||| |||||||||||||    
T  22561603 attatgagtagctaaatcttttagagattaggt 22561571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 150; Significance: 5e-79; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 120 - 523
Target Start/End: Complemental strand, 27299165 - 27298756
Alignment:
Q  120 gattttgtaatgcgtgacacgattttgaagatggttcgagcaggaatttaggtttagagatggaattgtggcacgattactgagaattgtgacacgattt 219  Q
    |||||| ||| ||||||||| ||||||||||  |  ||| | |||| |||||||||||| || || |||||||||||||||||| ||  |||||||||||    
T  27299165 gattttataaggcgtgacacaattttgaagagagggcgatccggaagttaggtttagagctgaaaatgtggcacgattactgaggatcatgacacgattt 27299066  T
Q  220 tgatcacaggaatttcctatt-------aacctgtttcagaaataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaaga 312  Q
    |  |||||  |||||||||||       ||||||||||||||| ||||||||| |||||||||||| | || |  | |||| |||||| |||||||||||    
T  27299065 ttgtcacat-aatttcctatttaagctaaacctgtttcagaaacaagggttctgaattttggagatttgaagtgtggtttttagagcagaagactgaaga 27298967  T
Q  313 ggtggtcattccatcccactcatagtcaatttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctctta 412  Q
    |||||||||||||||  ||||||||||| |||| |||||| || |||||| |||| || ||| |||||||||| | ||||| |||||||||||| |||||    
T  27298966 ggtggtcattccatcaaactcatagtcagtttacgtatgtttttatgcttcaatttatgatggtatttgtaatccatattacgagtagctaaatgtctta 27298867  T
Q  413 gagattaggtttggagatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaa 511  Q
    |||||||||| | ||||||||||||| |||| | ||||||||| || ||||| |||||||||||||||| ||||||| ||||||||||||||||||||||    
T  27298866 gagattaggtct-gagatgaatctgaagtaatcatgtttgaaacatgtggctgtgaaactctattgcttgtgaatatcaatctagttttattcaattcaa 27298768  T
Q  512 tagtttttaatg 523  Q
    | ||| ||||||    
T  27298767 ttgttcttaatg 27298756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 290 - 523
Target Start/End: Complemental strand, 27308546 - 27308315
Alignment:
Q  290 ttttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaatttatgtatgtgttaatgctttaattaattatgttatttgtaattcgt 389  Q
    |||| |||||| |||||||||||||||| |||||||||||  ||||||||  ||||||||||| || |||||| ||  | | |||||||||| ||| | |    
T  27308546 ttttcagagcagaagactgaagaggtggccattccatccc--tcatagtcggtttatgtatgtttttatgcttcaacgattgatgttatttgcaatccat 27308449  T
Q  390 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaacct-gtttgaaatatatggctatgaaactctattgcttatgaatat 488  Q
    |||||| |||||||||||||||||||||||||| || |||||||||||| |||| || |||| ||| || ||||||||||| |||||||||| |||||||    
T  27308448 attatgtgtagctaaatctcttagagattaggtctg-agatgaatctgaagtaatcttgtttaaaacatgtggctatgaaaatctattgcttgtgaatat 27308350  T
Q  489 taatctagttttattcaattcaatagtttttaatg 523  Q
     ||||||||||||||||||||||| ||| ||||||    
T  27308349 caatctagttttattcaattcaattgttcttaatg 27308315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 332 - 508
Target Start/End: Complemental strand, 27309063 - 27308887
Alignment:
Q  332 tcatagtcaatttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatg 431  Q
    ||||||| | ||||||||||| || |||||| || | || |||||||||||||||| |||||||||||||||||||||||||||||||||| | ||||||    
T  27309063 tcatagttagtttatgtatgtttttatgcttcaactgatgatgttatttgtaattcatattatgagtagctaaatctcttagagattaggtct-gagatg 27308965  T
Q  432 aatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaatt 508  Q
    ||||||| |||| | ||||||||| || ||| | |||||||||||||||| ||||||| |||||| ||||||||||||    
T  27308964 aatctgaagtaatcttgtttgaaacatttggttgtgaaactctattgcttgtgaatatcaatctatttttattcaatt 27308887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 241 - 443
Target Start/End: Complemental strand, 8099373 - 8099174
Alignment:
Q  241 aacctgtttcagaaataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtca 340  Q
    ||||||||||| ||| ||||||||| ||||| ||  |||| ||  ||||||||||||||| |||| |||||||||||||| ||||||| |||||||||||    
T  8099373 aacctgtttcaaaaacaagggttctgaatttagggtatctgaagcacgattttgagagcataagattgaagaggtggtcagtccatccaactcatagtca 8099274  T
Q  341 atttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatg 440  Q
      || ||||||| |||| ||||  | | ||||||||||||||||||    |||| ||||| ||||||  |||| |||| | | ||||||||||| |||||    
T  8099273 --ttttgtatgttttaaagcttagaatgattatgttatttgtaatttcagttatcagtagttaaatc-attagtgattggatctggagatgaatatgatg 8099177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 342 - 523
Target Start/End: Original strand, 18542270 - 18542452
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgt 441  Q
    ||||||||||| ||||| |||  ||| |||||| ||||||||| |   ||||||||||||||||||| ||||||||||||||| ||||||||| ||||||    
T  18542270 tttatgtatgttttaattcttccattgattatgctatttgtaaattcaattatgagtagctaaatcttttagagattaggttt-gagatgaatatgatgt 18542368  T
Q  442 aacctgtttgaaatatatggctatgaaactctattgc--ttatgaatattaatctagttttattcaattcaatagtttttaatg 523  Q
    |  |||||||||   | |   | |||||||||||| |   ||||||||| ||| ||||||||||||||||||| ||| ||||||    
T  18542369 actctgtttgaaccttgttaatgtgaaactctatttcatatatgaatatcaatatagttttattcaattcaattgttcttaatg 18542452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 397 - 523
Target Start/End: Original strand, 11636608 - 11636733
Alignment:
Q  397 gtagctaaatctcttagagattaggtttggagatgaatctgatgtaacc-tgtttgaaatatatggctatgaaactctattgcttatgaatattaatcta 495  Q
    |||||||||||||||||||||||||| || |||||| |||||||||||| |  |||||  || | ||| ||||||||||||  || ||||||| ||||||    
T  11636608 gtagctaaatctcttagagattaggtctg-agatgattctgatgtaaccctaattgaaccatgttgctgtgaaactctatta-ttgtgaatatcaatcta 11636705  T
Q  496 gttttattcaattcaatagtttttaatg 523  Q
    ||||||||||||||||| ||| ||||||    
T  11636706 gttttattcaattcaattgttcttaatg 11636733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 526
Target Start/End: Original strand, 22360214 - 22360349
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatat 488  Q
    ||||||||||||||||||||||||||||||||| | ||||||| | || ||||| |||  || ||| || | | | |||||||| ||| ||| |||||||    
T  22360214 attatgagtagctaaatctcttagagattaggtct-gagatgattatg-tgtaaccctaatttaaacatgttgatgtgaaactcaatttcttgtgaatat 22360311  T
Q  489 taatctagttttattcaattcaatagtttttaatgttt 526  Q
     |||||| || ||||||||||||| ||| |||||||||    
T  22360312 caatctatttatattcaattcaattgttcttaatgttt 22360349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 35751174 - 35751254
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  35751174 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 35751254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 425
Target Start/End: Complemental strand, 29344301 - 29344266
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttg 425  Q
    ||||||||||||||||||||||||||||||||||||    
T  29344301 attatgagtagctaaatctcttagagattaggtttg 29344266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 523
Target Start/End: Original strand, 45896148 - 45896281
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatat 488  Q
    ||||||||||||||||||||||||||||||||| | ||||||| |||  ||||| |||  |||||  |||| ||| ||||||||||||  || |||||      
T  45896148 attatgagtagctaaatctcttagagattaggtct-gagatgattct-ttgtaaccctaattgaaccatattgctgtgaaactctatttattgtgaatga 45896245  T
Q  489 taatctag-ttttattcaattcaatagtttttaatg 523  Q
     ||||||| |||||||||||||||| ||| ||||||    
T  45896246 caatctagtttttattcaattcaattgttcttaatg 45896281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 526
Target Start/End: Complemental strand, 22994168 - 22993989
Alignment:
Q  345 atgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaac 444  Q
    |||||||| ||||| |||  ||| | |||| ||||||||| ||  ||||||||||||||||||||| ||||||||||| || |||||| | || || |||    
T  22994168 atgtatgttttaattcttccattgaatatgctatttgtaactca-attatgagtagctaaatctctcagagattaggtctg-agatgattatg-tgaaac 22994072  T
Q  445 c-tgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatgttt 526  Q
    | |  || ||| || | ||| | ||||||||||  || ||||||| |||||||||||||||||||||||  || |||||||||    
T  22994071 cgtaatttaaacatgttgctgtaaaactctatttattgtgaatatcaatctagttttattcaattcaatttttcttaatgttt 22993989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 369 - 422
Target Start/End: Original strand, 7486317 - 7486370
Alignment:
Q  369 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  7486317 attatgttatttgtaaactcaattatgagtagctaaatctcttagagattaggt 7486370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 389 - 422
Target Start/End: Original strand, 27091661 - 27091694
Alignment:
Q  389 tattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||||||||||||||||||||||||||    
T  27091661 tattatgagtagctaaatctcttagagattaggt 27091694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 369 - 422
Target Start/End: Original strand, 30690482 - 30690535
Alignment:
Q  369 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    |||||| ||||||||| |   |||||||||||||||||||||||||||||||||    
T  30690482 attatgctatttgtaaattcaattatgagtagctaaatctcttagagattaggt 30690535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 47051215 - 47051295
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgt-aattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| ||||| |||  ||| |||||| ||||||| || ||  |||||||||||||||||||||||||||||||||    
T  47051215 tttatgtatgttttaattcttccattgattatgctatttgtgaactca-attatgagtagctaaatctcttagagattaggt 47051295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 2873332 - 2873364
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  2873332 attatgagtagctaaatctcttagagattaggt 2873364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 3840284 - 3840316
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  3840284 attatgagtagctaaatctcttagagattaggt 3840316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 11190294 - 11190326
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  11190294 attatgagtagctaaatctcttagagattaggt 11190326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 20729073 - 20729041
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  20729073 attatgagtagctaaatctcttagagattaggt 20729041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 24125267 - 24125299
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  24125267 attatgagtagctaaatctcttagagattaggt 24125299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 24128544 - 24128576
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  24128544 attatgagtagctaaatctcttagagattaggt 24128576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 25584455 - 25584487
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  25584455 attatgagtagctaaatctcttagagattaggt 25584487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 27299284 - 27299232
Alignment:
Q  24 aatttgagacaaccaggggtgtgaaaagtaataaaatatgaacaacaagaaat 76  Q
    ||||||||||||||| |||||||||||| || |||||||||| |||| |||||    
T  27299284 aatttgagacaaccaagggtgtgaaaagcaagaaaatatgaagaacatgaaat 27299232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 32287750 - 32287718
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  32287750 attatgagtagctaaatctcttagagattaggt 32287718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 41976783 - 41976815
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  41976783 attatgagtagctaaatctcttagagattaggt 41976815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 43926603 - 43926635
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  43926603 attatgagtagctaaatctcttagagattaggt 43926635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 47054693 - 47054725
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  47054693 attatgagtagctaaatctcttagagattaggt 47054725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 50461975 - 50461943
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  50461975 attatgagtagctaaatctcttagagattaggt 50461943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 54723509 - 54723541
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  54723509 attatgagtagctaaatctcttagagattaggt 54723541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 369 - 422
Target Start/End: Complemental strand, 30220456 - 30220403
Alignment:
Q  369 attatgttatttgtaat-tcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||||||||  ||| ||||||||||||||||||||||||| |||||||    
T  30220456 attatgttatttgtaaactcg-attatgagtagctaaatctcttagatattaggt 30220403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 269 - 318
Target Start/End: Original strand, 6030457 - 6030506
Alignment:
Q  269 ttttggagatctaaaatacgattttgagagcacaagactgaagaggtggt 318  Q
    |||||||||||||||| ||||  ||||||||| |||||| ||||||||||    
T  6030457 ttttggagatctaaaacacgaacttgagagcaaaagactaaagaggtggt 6030506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 526
Target Start/End: Original strand, 22370117 - 22370252
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatat 488  Q
    |||||||||||| |||||||||||||||||||| | ||||||| | || ||||| |||  || ||| || | | | |||||||| ||| ||  |||||||    
T  22370117 attatgagtagcaaaatctcttagagattaggtct-gagatgattatg-tgtaaccctaatttaaacatgttgttgtgaaactcaatttctcgtgaatat 22370214  T
Q  489 taatctagttttattcaattcaatagtttttaatgttt 526  Q
     |||||| || ||||||||||||| ||| |||||||||    
T  22370215 caatctatttatattcaattcaattgttcttaatgttt 22370252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 452 - 512
Target Start/End: Complemental strand, 282555 - 282495
Alignment:
Q  452 aaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaat 512  Q
    |||||| ||||  |||||||| |||| |||| | ||| |||||||||||||||||||||||    
T  282555 aaatatgtggccgtgaaactcaattgattataattataaatctagttttattcaattcaat 282495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 7167836 - 7167804
Alignment:
Q  86 gtgacatgattttggcatcgtgacacaatttca 118  Q
    |||||| ||||||||||||||||||||||||||    
T  7167836 gtgacacgattttggcatcgtgacacaatttca 7167804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 17040448 - 17040416
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| |||||||||||||||||||||    
T  17040448 attatgagtagttaaatctcttagagattaggt 17040416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 19301931 - 19301899
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||||||| |||||||||||||||||    
T  19301931 attatgagtagctaactctcttagagattaggt 19301899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 19305115 - 19305083
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||||||| |||||||||||||||||    
T  19305115 attatgagtagctaactctcttagagattaggt 19305083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 22783360 - 22783392
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    ||||| |||||||||||||||||||||||||||    
T  22783360 attataagtagctaaatctcttagagattaggt 22783392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 22787724 - 22787756
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    ||||| |||||||||||||||||||||||||||    
T  22787724 attataagtagctaaatctcttagagattaggt 22787756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 28008496 - 28008464
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||| ||||||    
T  28008496 attatgagtagctaaatctcttagagtttaggt 28008464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 52309984 - 52309952
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||||||||||||||||| |||||||    
T  52309984 attatgagtagctaaatctcttagatattaggt 52309952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0187 (Bit Score: 119; Significance: 2e-60; HSPs: 1)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 247 - 512
Target Start/End: Original strand, 31249 - 31514
Alignment:
Q  247 tttcagaaataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaatttat 346  Q
    ||||||||||||||||||| ||||| |||||||| ||     |||||||||||| |||||||||||||||| |||||| ||| ||||||||||| |||||    
T  31249 tttcagaaataagggttctgaatttaggagatctgaagcgtaattttgagagcaaaagactgaagaggtggccattccttccaactcatagtcagtttat 31348  T
Q  347 gtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cc 445  Q
    |||||| || |||||| |||| ||  |||||||| |||| | ||  |||||||| ||||||||||||||||||||| | |||||||||||||||||| |     
T  31349 gtatgtttttatgcttcaattgatgttgttatttttaatccatacaatgagtagttaaatctcttagagattaggtct-gagatgaatctgatgtaatca 31447  T
Q  446 tgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaat 512  Q
    ||||||||| || ||| | ||||||| |||||||||||||||| |||||||||||||||||||||||    
T  31448 tgtttgaaacatgtggttgtgaaactatattgcttatgaatatcaatctagttttattcaattcaat 31514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 2e-60; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 247 - 512
Target Start/End: Complemental strand, 37907828 - 37907563
Alignment:
Q  247 tttcagaaataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaatttat 346  Q
    ||||||||||||||||||| ||||| |||||||| ||     |||||||||||| |||||||||||||||| |||||| ||| ||||||||||| |||||    
T  37907828 tttcagaaataagggttctgaatttaggagatctgaagcgtaattttgagagcaaaagactgaagaggtggccattccttccaactcatagtcagtttat 37907729  T
Q  347 gtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cc 445  Q
    |||||| || |||||| |||| ||  |||||||| |||| | ||  |||||||| ||||||||||||||||||||| | |||||||||||||||||| |     
T  37907728 gtatgtttttatgcttcaattgatgttgttatttttaatccatacaatgagtagttaaatctcttagagattaggtct-gagatgaatctgatgtaatca 37907630  T
Q  446 tgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaat 512  Q
    ||||||||| || ||| | ||||||| |||||||||||||||| |||||||||||||||||||||||    
T  37907629 tgtttgaaacatgtggttgtgaaactatattgcttatgaatatcaatctagttttattcaattcaat 37907563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 342 - 512
Target Start/End: Original strand, 7635281 - 7635451
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgt 441  Q
    ||||||||||| ||||| |||| ||| |||||| |||||||||     ||||||||||| ||||||||||||||||||||| | ||||||| ||||||||    
T  7635281 tttatgtatgttttaattctttcattgattatgctatttgtaaactcaattatgagtagttaaatctcttagagattaggtgt-gagatgattctgatgt 7635379  T
Q  442 aa-cctgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaat 512  Q
    || |||  || ||| || | | | |||||||||||| ||||||||||| |||||||||||||||||||||||    
T  7635380 aaccctaatttaaacatgttgatgtgaaactctatttcttatgaatatcaatctagttttattcaattcaat 7635451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 342 - 523
Target Start/End: Complemental strand, 27332258 - 27332077
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgt 441  Q
    ||||||||||| ||||| |||| ||| |||||| ||| |||||     ||||||||||||||||||||||| ||||||||| || | |||| ||||||||    
T  27332258 tttatgtatgttttaattctttcattgattatgctatctgtaaactcaattatgagtagctaaatctcttaaagattaggtctgaa-atgattctgatgt 27332160  T
Q  442 aacc-tgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatg 523  Q
    |||| |  || ||| || | ||||||||||| |||| ||| ||||||| ||||||||||||||||||||||| ||| ||||||    
T  27332159 aaccctaatttaaacatgttgctatgaaactttatttcttgtgaatatcaatctagttttattcaattcaattgttattaatg 27332077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 390 - 512
Target Start/End: Complemental strand, 34066880 - 34066758
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaacc-tgtttgaaatatatggctatgaaactctattgcttatgaatat 488  Q
    ||||||||||||||||||||||||||||||||| || |||||| | |||||||||| |  || ||| || | | | |||||||||||| ||| |||||||    
T  34066880 attatgagtagctaaatctcttagagattaggtatg-agatgattttgatgtaaccctaatttaaacatgttgttgtgaaactctatttcttgtgaatat 34066782  T
Q  489 taatctagttttattcaattcaat 512  Q
     |||||||||||||||||||||||    
T  34066781 caatctagttttattcaattcaat 34066758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 522
Target Start/End: Complemental strand, 34732819 - 34732667
Alignment:
Q  369 attatgttatttgtaat-tcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaacctgtttgaaatatatggctatga 467  Q
    ||||||||||||||||  ||| ||||||||||||||||||| ||||||||||||  | ||||||| |||| |||||||   ||||||||| | ||| |||    
T  34732819 attatgttatttgtaaactcg-attatgagtagctaaatctattagagattaggcct-gagatgattctg-tgtaaccctattgaaatatgttgctgtga 34732723  T
Q  468 aactctattgcttatgaatattaatctag-ttttattcaattcaatagtttttaat 522  Q
    ||||||||   || |||||  |||||||| |||||||||||||||| ||| |||||    
T  34732722 aactctatctattgtgaatgataatctagtttttattcaattcaattgttcttaat 34732667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 342 - 436
Target Start/End: Complemental strand, 6071441 - 6071348
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatct 436  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     ||||||||||||||||||||||||||||||||| | |||||||||||    
T  6071441 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggtct-gagatgaatct 6071348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 27536773 - 27536693
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| |||||  ||| ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  27536773 tttatgtatgttttaattttttcattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 27536693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 20398537 - 20398569
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  20398537 attatgagtagctaaatctcttagagattaggt 20398569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 21018905 - 21018873
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  21018905 attatgagtagctaaatctcttagagattaggt 21018873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 23022363 - 23022331
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  23022363 attatgagtagctaaatctcttagagattaggt 23022331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 28110741 - 28110773
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  28110741 attatgagtagctaaatctcttagagattaggt 28110773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 31204522 - 31204554
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  31204522 attatgagtagctaaatctcttagagattaggt 31204554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 37184303 - 37184271
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  37184303 attatgagtagctaaatctcttagagattaggt 37184271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 41058741 - 41058709
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  41058741 attatgagtagctaaatctcttagagattaggt 41058709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 45961184 - 45961152
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  45961184 attatgagtagctaaatctcttagagattaggt 45961152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 422
Target Start/End: Original strand, 45941102 - 45941132
Alignment:
Q  392 tatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||    
T  45941102 tatgagtagctaaatctcttagagattaggt 45941132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 11668465 - 11668433
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||| ||||||||||||||||||||||||||    
T  11668465 attatgtgtagctaaatctcttagagattaggt 11668433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 246 - 523
Target Start/End: Complemental strand, 48986 - 48709
Alignment:
Q  246 gtttcagaaataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaattta 345  Q
    |||||||||| ||||||||  ||||||||||| | |||   | |||||||||||| |||||||||||||||| ||| |||||| |||| |||||| ||||    
T  48986 gtttcagaaacaagggttcgaaattttggagaccgaaagcgcaattttgagagcaaaagactgaagaggtggccatcccatccaactcgtagtcagttta 48887  T
Q  346 tgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaac- 444  Q
    ||||||| ||||| |||  ||| |||||| |||||||||||   ||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||     
T  48886 tgtatgttttaattcttccattgattatgctatttgtaattacaattatgagtggctaaatctcttagagattaggttt-gagatgaatctgatgttact 48788  T
Q  445 ctgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatg 523  Q
    ||| |||| | || |   | || ||||||||| | | ||||||| ||||||||||||||||||||||| ||| ||||||    
T  48787 ctggttgagacatgttaatgtgcaactctatttcatgtgaatatcaatctagttttattcaattcaattgttcttaatg 48709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 251 - 524
Target Start/End: Complemental strand, 35521941 - 35521671
Alignment:
Q  251 agaaataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaatttatgtat 350  Q
    |||| |||||||||  |||||||||||||| ||  ||||||||||||||| |  ||| ||| |||||||| ||||||| ||| |||||    || |||||    
T  35521941 agaagtaagggttcggaattttggagatctgaagcacgattttgagagcaaagaactaaagtggtggtcaatccatccaactaatagt----ttgtgtat 35521846  T
Q  351 gtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaac-ctgtt 449  Q
    || || |||||| |||| |||||| |||||||||||   ||||||||||||||||||| ||| ||||||||||  |||||||||||||||||||  ||||    
T  35521845 gtttttatgcttaaattgattatgctatttgtaatttcaattatgagtagctaaatctattaaagattaggttatgagatgaatctgatgtaactttgtt 35521746  T
Q  450 tgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatgt 524  Q
    ||||  || | | | |||||||||||| | | ||  ||| |||||||||||| |||||||||| ||| |||||||    
T  35521745 tgaaccatgttgttgtgaaactctatttcatgtgggtatcaatctagttttactcaattcaattgttcttaatgt 35521671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 259 - 342
Target Start/End: Original strand, 11187611 - 11187694
Alignment:
Q  259 gggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaat 342  Q
    ||||||| |||||||||||| | ||  | | |||||||||||||||||||||||||||| ||||||| |  |||||||||||||    
T  11187611 gggttctgaattttggagatttgaagcatgcttttgagagcacaagactgaagaggtggccattccaccaaactcatagtcaat 11187694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 511
Target Start/End: Original strand, 22630486 - 22630627
Alignment:
Q  369 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaacctgtttgaaatatatggctatgaa 468  Q
    ||||||||||||||||     ||||||||||||||||||| |||||| |||||| | ||||||| ||| |||||||||  |||||| || | ||| ||||    
T  22630486 attatgttatttgtaaacaccattatgagtagctaaatctattagaggttaggtct-gagatgattct-atgtaacctaattgaaacatgttgctgtgaa 22630583  T
Q  469 actctattgcttatgaatattaatctag-ttttattcaattcaa 511  Q
    ||||||||  || |||||  |||||||| |||||||||||||||    
T  22630584 actctatttattgtgaatgataatctagtttttattcaattcaa 22630627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 31428030 - 31427938
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatc 435  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     ||||||||||||||||||||||||||||||||| | ||||||||||    
T  31428030 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggtct-gagatgaatc 31427938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 9966792 - 9966712
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||| | ||||| |||| ||| |||||||||| |||||     |||||||||||||||||||||||||||||||||    
T  9966792 tttatgtatattttaattctttcattgattatgttatatgtaaactcaattatgagtagctaaatctcttagagattaggt 9966712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 33310283 - 33310363
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| |||||  ||  ||| ||||||||||||||||     |||||||||||||||||||||||||||||||||    
T  33310283 tttatgtatgttttaatttttccattgattatgttatttgtaaactcaattatgagtagctaaatctcttagagattaggt 33310363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 45453491 - 45453571
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  45453491 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 45453571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 45456778 - 45456858
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  45456778 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 45456858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 369 - 422
Target Start/End: Original strand, 43723345 - 43723398
Alignment:
Q  369 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    |||||| ||||||||| |   |||||||||||||||||||||||||||||||||    
T  43723345 attatgctatttgtaaattcaattatgagtagctaaatctcttagagattaggt 43723398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 8888300 - 8888332
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  8888300 attatgagtagctaaatctcttagagattaggt 8888332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 9185864 - 9185832
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  9185864 attatgagtagctaaatctcttagagattaggt 9185832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 9189093 - 9189061
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  9189093 attatgagtagctaaatctcttagagattaggt 9189061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 11348336 - 11348304
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  11348336 attatgagtagctaaatctcttagagattaggt 11348304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 13972334 - 13972302
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  13972334 attatgagtagctaaatctcttagagattaggt 13972302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 22020733 - 22020765
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  22020733 attatgagtagctaaatctcttagagattaggt 22020765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 25960129 - 25960097
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  25960129 attatgagtagctaaatctcttagagattaggt 25960097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 27266453 - 27266485
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  27266453 attatgagtagctaaatctcttagagattaggt 27266485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 30190001 - 30190033
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  30190001 attatgagtagctaaatctcttagagattaggt 30190033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 38015183 - 38015215
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  38015183 attatgagtagctaaatctcttagagattaggt 38015215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 40781137 - 40781169
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  40781137 attatgagtagctaaatctcttagagattaggt 40781169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 42369151 - 42369119
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  42369151 attatgagtagctaaatctcttagagattaggt 42369119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 376 - 443
Target Start/End: Original strand, 6298117 - 6298183
Alignment:
Q  376 tatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa 443  Q
    |||||||||||| |||||||||||||||||| || ||| ||||| || | ||||||||| ||||||||    
T  6298117 tatttgtaattcctattatgagtagctaaat-tcctagggattatgtctagagatgaatgtgatgtaa 6298183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 422
Target Start/End: Original strand, 5105393 - 5105423
Alignment:
Q  392 tatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||    
T  5105393 tatgagtagctaaatctcttagagattaggt 5105423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 389 - 419
Target Start/End: Original strand, 24234759 - 24234789
Alignment:
Q  389 tattatgagtagctaaatctcttagagatta 419  Q
    |||||||||||||||||||||||||||||||    
T  24234759 tattatgagtagctaaatctcttagagatta 24234789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 416
Target Start/End: Complemental strand, 31430178 - 31430104
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagaga 416  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||    
T  31430178 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagaga 31430104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 422
Target Start/End: Complemental strand, 43208328 - 43208298
Alignment:
Q  392 tatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||    
T  43208328 tatgagtagctaaatctcttagagattaggt 43208298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 389 - 422
Target Start/End: Original strand, 24238031 - 24238064
Alignment:
Q  389 tattatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||| |||||||||||||    
T  24238031 tattatgagtagctaaatcttttagagattaggt 24238064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 418
Target Start/End: Complemental strand, 37280117 - 37280089
Alignment:
Q  390 attatgagtagctaaatctcttagagatt 418  Q
    |||||||||||||||||||||||||||||    
T  37280117 attatgagtagctaaatctcttagagatt 37280089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 2e-32; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 359 - 522
Target Start/End: Complemental strand, 563692 - 563530
Alignment:
Q  359 gctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaacctgtttgaaatata 458  Q
    |||| |||| ||||||||||||||||||   |||||||||| ||||||| || |||||||||||||||||| || |||||||||  |||||||||| ||     
T  563692 gcttcaattgattatgttatttgtaattttcattatgagtatctaaatcact-agagattaggtttggagacgattctgatgtagactgtttgaaacatg 563594  T
Q  459 tggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaat 522  Q
    ||| | |||||||||||||| | ||||||||||| ||||||||||||||| ||| ||| |||||    
T  563593 tggttgtgaaactctattgcatgtgaatattaatatagttttattcaatttaattgttcttaat 563530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 335 - 512
Target Start/End: Original strand, 31575045 - 31575222
Alignment:
Q  335 tagtcaatttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaat 434  Q
    |||||||| ||||||||| |||||  ||  ||| ||||||||||||||||||   ||||||||| | ||||||||||| ||| ||||| || ||||||||    
T  31575045 tagtcaatatatgtatgttttaattattccattgattatgttatttgtaatttcaattatgagttgttaaatctcttaaagagtaggtctg-agatgaat 31575143  T
Q  435 ctgatgtaacc-tgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaat 512  Q
    ||||||||||| | ||||||  || | | | |||||||||||| | | ||||||| |||||||||||||| ||||||||    
T  31575144 ctgatgtaaccctatttgaaccatgttgttgtgaaactctatttcatgtgaatatcaatctagttttatttaattcaat 31575222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 427 - 523
Target Start/End: Complemental strand, 18766044 - 18765947
Alignment:
Q  427 agatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatg 523  Q
    |||||||||||| |||| ||| ||||||| || ||||| ||||||| |||||||| || |||||||||||||||||||||||||||| ||||||||||    
T  18766044 agatgaatctgaggtaatcctatttgaaacatgtggctgtgaaactttattgcttgtgcatattaatctagttttattcaattcaattgtttttaatg 18765947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 403 - 523
Target Start/End: Original strand, 21914818 - 21914937
Alignment:
Q  403 aaatctcttagagattaggtttggagatgaatctgatgtaacc-tgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagtttta 501  Q
    |||||||||||||||||||| || |||||| |||||||||||| |  |||||  || | ||||||||||||||||  || |||| || ||||||||||||    
T  21914818 aaatctcttagagattaggtctg-agatgattctgatgtaaccctaattgaaccatgttgctatgaaactctatta-ttgtgaaaatcaatctagtttta 21914915  T
Q  502 ttcaattcaatagtttttaatg 523  Q
    ||||||||||| ||| ||||||    
T  21914916 ttcaattcaattgttcttaatg 21914937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 17664187 - 17664267
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| ||||| |||| ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  17664187 tttatgtatgttttaattctttcattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 17664267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 247 - 336
Target Start/End: Complemental strand, 18766147 - 18766058
Alignment:
Q  247 tttcagaaataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcata 336  Q
    ||||||||| ||||||| | |||||||||||| | ||   | |||||||||||| |||||||||||||||| ||| |||||| |||||||    
T  18766147 tttcagaaacaagggttttgaattttggagatatgaagcgcaattttgagagcagaagactgaagaggtggccatcccatccaactcata 18766058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 7624737 - 7624817
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  7624737 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 7624817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 20055409 - 20055489
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| ||||| |||| ||| |||||  |||||||||     |||||||||||||||||||||||||||||||||    
T  20055409 tttatgtatgttttaattctttcattgattattctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 20055489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 523
Target Start/End: Complemental strand, 41877204 - 41877071
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatat 488  Q
    ||||||||||||||||||||||||||||||||| | ||||||| |||  ||||| |||  |||||  || | ||| ||||||||||||  || |||||      
T  41877204 attatgagtagctaaatctcttagagattaggtct-gagatgattct-ttgtaaccctaattgaaccatgttgctgtgaaactctatttattgtgaatga 41877107  T
Q  489 taatctag-ttttattcaattcaatagtttttaatg 523  Q
     ||||||| |||||||||||||||| ||||||||||    
T  41877106 caatctagtttttattcaattcaattgtttttaatg 41877071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 422
Target Start/End: Complemental strand, 26896064 - 26896011
Alignment:
Q  369 attatgttatttgtaat-tcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  26896064 attatgttatttgtaaactcg-attatgagtagctaaatctcttagagattaggt 26896011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 369 - 422
Target Start/End: Complemental strand, 26753162 - 26753109
Alignment:
Q  369 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    |||||| ||||||||| |   |||||||||||||||||||||||||||||||||    
T  26753162 attatgatatttgtaaattcaattatgagtagctaaatctcttagagattaggt 26753109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 7270699 - 7270731
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  7270699 attatgagtagctaaatctcttagagattaggt 7270731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 14016578 - 14016546
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  14016578 attatgagtagctaaatctcttagagattaggt 14016546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 18952376 - 18952408
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  18952376 attatgagtagctaaatctcttagagattaggt 18952408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 22129948 - 22129980
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  22129948 attatgagtagctaaatctcttagagattaggt 22129980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 30066025 - 30066057
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  30066025 attatgagtagctaaatctcttagagattaggt 30066057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 33551804 - 33551836
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  33551804 attatgagtagctaaatctcttagagattaggt 33551836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 34831446 - 34831478
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  34831446 attatgagtagctaaatctcttagagattaggt 34831478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 41306966 - 41306934
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  41306966 attatgagtagctaaatctcttagagattaggt 41306934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 390 - 425
Target Start/End: Complemental strand, 18239935 - 18239900
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttg 425  Q
    ||||||||||| ||||||||||||||||||||||||    
T  18239935 attatgagtagttaaatctcttagagattaggtttg 18239900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 4099961 - 4099929
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| |||||||||||||||||||||    
T  4099961 attatgagtagataaatctcttagagattaggt 4099929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 18032141 - 18032173
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    ||||||| |||||||||||||||||||||||||    
T  18032141 attatgaatagctaaatctcttagagattaggt 18032173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 3e-31; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 255 - 523
Target Start/End: Original strand, 24917731 - 24917998
Alignment:
Q  255 ataagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaatttatgtatgtgt 354  Q
    ||||||||| | |||||||||||| | ||  |||||||||||||   |||||| ||||||||||| |||||||| ||| |||||| || | ||||||| |    
T  24917731 ataagggttttgaattttggagatttgaagcacgattttgagagtggaagactaaagaggtggtc-ttccatccaacttatagtccatctttgtatgttt 24917829  T
Q  355 taatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgta-acctgtttgaa 453  Q
    |||||||| |  | |||||||||||  |||||   |||| |||| |||||||| |  | ||||||||| ||||||||| ||  ||||| || ||||||||    
T  24917830 taatgcttcagatgattatgttattactaattttcattacgagtggctaaatcacc-atagattaggtctggagatgattcgtatgtagacttgtttgaa 24917928  T
Q  454 atatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatg 523  Q
    |||| | ||| |||||||||||||| | ||||||||||| |||||||||||||| |||| ||| ||||||    
T  24917929 atatgtcgctgtgaaactctattgcatgtgaatattaatttagttttattcaatccaattgttcttaatg 24917998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 257 - 522
Target Start/End: Original strand, 2090144 - 2090408
Alignment:
Q  257 aagggttcttaattttggagatctaaaatacgattttgagagcacaagactgaagaggtggtcattccatcccactcatagtcaatttatgtatgtgtta 356  Q
    ||||||||| |||||||| ||||| ||  ||||||||||||| | |||||||||||||||| ||||||| |  |||||||||| ||   ||||| | |||    
T  2090144 aagggttctaaattttggcgatctgaagcacgattttgagagtataagactgaagaggtggccattccaccaaactcatagtcgatccttgtatatttta 2090243  T
Q  357 atgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgta-acctgtttgaaat 455  Q
    |||||| | || ||| ||||||||||||||   ||||||  ||||||||||  |||||||||| || |||||||||   |||||||  | ||||||||||    
T  2090244 atgcttcatttgattgtgttatttgtaattttcattatgtatagctaaatc-attagagattacgtctggagatgatcttgatgtaggcttgtttgaaat 2090342  T
Q  456 atatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaat 522  Q
    || ||| | |||||||||| ||  || || |||||||||||| |||||||||||||| ||| |||||    
T  2090343 atgtggttgtgaaactcta-tgtataagattattaatctagtcttattcaattcaattgttcttaat 2090408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 14683936 - 14683856
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| ||||| |||| ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  14683936 tttatgtatgttttaattcttttattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 14683856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 342 - 435
Target Start/End: Original strand, 6603080 - 6603172
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatc 435  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     ||||||||||||||||||||||||||||||||| | ||||||||||    
T  6603080 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggtct-gagatgaatc 6603172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 523
Target Start/End: Original strand, 7227197 - 7227330
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatat 488  Q
    ||||||||||||||||||||||||||||||||| |  |||||| |||| ||||| |||  |||||| || | ||||||||||||||||  || |||||      
T  7227197 attatgagtagctaaatctcttagagattaggtct-aagatgattctg-tgtaaccctaattgaaacatgttgctatgaaactctatttattgtgaatga 7227294  T
Q  489 taatctag-ttttattcaattcaatagtttttaatg 523  Q
     ||| ||| |||||||||||||||| ||| ||||||    
T  7227295 caatttagtttttattcaattcaattgttcttaatg 7227330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 445
Target Start/End: Complemental strand, 18562977 - 18562923
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaacc 445  Q
    ||||| ||||||||||||||||||||||||||| | ||||||| ||||||||||||    
T  18562977 attataagtagctaaatctcttagagattaggtct-gagatgattctgatgtaacc 18562923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 422
Target Start/End: Complemental strand, 11398516 - 11398438
Alignment:
Q  344 tatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  11398516 tatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 11398438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 9405927 - 9405959
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  9405927 attatgagtagctaaatctcttagagattaggt 9405959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 9865171 - 9865139
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  9865171 attatgagtagctaaatctcttagagattaggt 9865139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 17730484 - 17730516
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  17730484 attatgagtagctaaatctcttagagattaggt 17730516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 342 - 436
Target Start/End: Original strand, 13842262 - 13842355
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatct 436  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||| |||||||||||| ||||||||||||| | |||||||||||    
T  13842262 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgcgtagctaaatctattagagattaggtct-gagatgaatct 13842355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 435
Target Start/End: Original strand, 16165418 - 16165462
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttggagatgaatc 435  Q
    ||||||||||| ||||||||||||||||||||| | ||||||||||    
T  16165418 attatgagtagttaaatctcttagagattaggtct-gagatgaatc 16165462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 390 - 435
Target Start/End: Original strand, 48645144 - 48645188
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttggagatgaatc 435  Q
    |||||| |||||||||||||||||||||||||| | ||||||||||    
T  48645144 attatgcgtagctaaatctcttagagattaggtct-gagatgaatc 48645188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 4596453 - 4596421
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||| ||||||||||||||||||||||||||    
T  4596453 attatgtgtagctaaatctcttagagattaggt 4596421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 4695194 - 4695226
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||||||||||| |||||||||||||    
T  4695194 attatgagtagctaaatcttttagagattaggt 4695226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 23225350 - 23225318
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| |||||||||||||||||||||    
T  23225350 attatgagtagttaaatctcttagagattaggt 23225318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 23234503 - 23234471
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| |||||||||||||||||||||    
T  23234503 attatgagtagttaaatctcttagagattaggt 23234471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 345 - 523
Target Start/End: Original strand, 9575 - 9753
Alignment:
Q  345 atgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaac 444  Q
    |||||| | ||||| |||||||| |||||| |||||||||     ||||||||||||||||||||||||| ||||||| || |||||| ||||||||| |    
T  9575 atgtatattttaattctttaattgattatgctatttgtaaactcaattatgagtagctaaatctcttagatattaggtctg-agatgattctgatgtatc 9673  T
Q  445 c-tgtttgaaatatatggctatgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatg 523  Q
    | |  || ||| || | ||| |||||||||||| ||||||||||| ||| ||||||||||||||||||| ||| ||||||    
T  9674 cctaatttaaacatgttgctgtgaaactctatttcttatgaatatcaatatagttttattcaattcaattgttcttaatg 9753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 89404 - 89484
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| ||||| ||| |||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  89404 tttatgtatgttttaattcttcaattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 89484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 335 - 422
Target Start/End: Complemental strand, 7944439 - 7944352
Alignment:
Q  335 tagtcaatttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    |||||| ||||||| ||| ||||||||| |||| || |||||||||||||| |  ||||||||||| ||||||| ||||| |||||||    
T  7944439 tagtcagtttatgtctgttttaatgcttcaattgatcatgttatttgtaataccaattatgagtagttaaatctattagaaattaggt 7944352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 36711143 - 36711063
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  36711143 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 36711063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 22174363 - 22174319
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttggagatgaatc 435  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||    
T  22174363 attatgagtagctaaatctcttagagattaggtct-gagatgaatc 22174319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 12582688 - 12582720
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  12582688 attatgagtagctaaatctcttagagattaggt 12582720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 16953456 - 16953488
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  16953456 attatgagtagctaaatctcttagagattaggt 16953488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 18824834 - 18824802
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  18824834 attatgagtagctaaatctcttagagattaggt 18824802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 18826327 - 18826295
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  18826327 attatgagtagctaaatctcttagagattaggt 18826295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 422
Target Start/End: Original strand, 2560248 - 2560301
Alignment:
Q  369 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||||||||     |||||||||||||||||||||||||| ||||||    
T  2560248 attatgttatttgtaaacaccattatgagtagctaaatctcttagaggttaggt 2560301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 5614167 - 5614135
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    ||||| |||||||||||||||||||||||||||    
T  5614167 attataagtagctaaatctcttagagattaggt 5614135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 5980752 - 5980720
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||| ||||||||    
T  5980752 attatgagtagctaaatctcttagggattaggt 5980720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 30784610 - 30784642
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||| ||||||    
T  30784610 attatgagtagctaaatctcttagaggttaggt 30784642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 418
Target Start/End: Complemental strand, 38248839 - 38248811
Alignment:
Q  390 attatgagtagctaaatctcttagagatt 418  Q
    |||||||||||||||||||||||||||||    
T  38248839 attatgagtagctaaatctcttagagatt 38248811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 345 - 422
Target Start/End: Complemental strand, 118931 - 118854
Alignment:
Q  345 atgtatgtgttaatgctttaattaattatgttatttgtaat-tcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||||||  ||| ||| |||||| |||||||||  ||| |||||||||||||||||||||||||||||||||    
T  118931 atgtatgtgttaattatttcattgattatgctatttgtaaactcg-attatgagtagctaaatctcttagagattaggt 118854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 390 - 526
Target Start/End: Complemental strand, 34018220 - 34018085
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaacctgtttgaaatatatggctatgaaactctattgcttatgaatatt 489  Q
    ||||||||||||||||||||||||||||||||| | ||||||| |||  ||||||||  |||||  || | ||| ||||||||||||  || |||||       
T  34018220 attatgagtagctaaatctcttagagattaggtct-gagatgattct-ttgtaacctaattgaaccatgttgctgtgaaactctatttattgtgaatgac 34018123  T
Q  490 aatctag-ttttattcaattcaatagtttttaatgttt 526  Q
    | ||||| |||||||||||||||| ||| |||||||||    
T  34018122 agtctagtttttattcaattcaattgttcttaatgttt 34018085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 15405572 - 15405492
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  15405572 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 15405492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Original strand, 56195161 - 56195241
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  56195161 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 56195241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 390 - 526
Target Start/End: Complemental strand, 27691583 - 27691447
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttggagatgaatctgatgtaa-cctgtttgaaatatatggctatgaaactctattgcttatgaatat 488  Q
    ||||||||||||||||||||||||||||||||| | ||||||| |||  ||||| |||  |||||  || | ||| ||||||||||||  || |||||      
T  27691583 attatgagtagctaaatctcttagagattaggtct-gagatgattct-ttgtaaccctaattgaatcatgttgctgtgaaactctatttattgtgaatga 27691486  T
Q  489 taatctag-ttttattcaattcaatagtttttaatgttt 526  Q
     ||||||| |||||||||||||||| ||| |||||||||    
T  27691485 caatctagtttttattcaattcaattgttcttaatgttt 27691447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 465 - 523
Target Start/End: Complemental strand, 37740126 - 37740069
Alignment:
Q  465 tgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatg 523  Q
    ||||||||||||  || ||||||||||||||||||||||||||||||| ||| ||||||    
T  37740126 tgaaactctatta-ttgtgaatattaatctagttttattcaattcaattgttgttaatg 37740069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 369 - 422
Target Start/End: Complemental strand, 15436930 - 15436877
Alignment:
Q  369 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    |||||| |||||||||   | |||||||||||||||||||||||||||||||||    
T  15436930 attatgctatttgtaaactgaattatgagtagctaaatctcttagagattaggt 15436877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 465 - 526
Target Start/End: Complemental strand, 33494059 - 33493998
Alignment:
Q  465 tgaaactctattgcttatgaatattaatctagttttattcaattcaatagtttttaatgttt 526  Q
    |||||||||||| | ||||||||| ||| |||||||||| |||||||| ||| |||||||||    
T  33494059 tgaaactctatttcatatgaatatcaatttagttttatttaattcaattgttgttaatgttt 33493998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 435
Target Start/End: Original strand, 33926601 - 33926693
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatc 435  Q
    ||||||||||| ||||| |||| ||| |||||  |||||||||     |||||||||| |||||||||||||||||||||| | ||||||||||    
T  33926601 tttatgtatgttttaattctttcattgattatactatttgtaaactcaattatgagtaactaaatctcttagagattaggtct-gagatgaatc 33926693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 34320357 - 34320313
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttggagatgaatc 435  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||    
T  34320357 attatgagtagctaaatctcttagagattaggtct-gagatgaatc 34320313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 390 - 435
Target Start/End: Complemental strand, 44809395 - 44809351
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttggagatgaatc 435  Q
    ||||||||||||||||||||||||||||||||| | ||||||||||    
T  44809395 attatgagtagctaaatctcttagagattaggtct-gagatgaatc 44809351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 342 - 435
Target Start/End: Complemental strand, 46955966 - 46955874
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggtttggagatgaatc 435  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     ||||||||||||||||||||||| ||||||||| | ||||||||||    
T  46955966 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttaaagattaggtct-gagatgaatc 46955874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 15163874 - 15163906
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  15163874 attatgagtagctaaatctcttagagattaggt 15163906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 369 - 421
Target Start/End: Complemental strand, 15430316 - 15430264
Alignment:
Q  369 attatgttatttgtaattcgtattatgagtagctaaatctcttagagattagg 421  Q
    |||||| |||||||||   | ||||||||||||||||||||||||||||||||    
T  15430316 attatgctatttgtaaactgaattatgagtagctaaatctcttagagattagg 15430264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 19820410 - 19820442
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  19820410 attatgagtagctaaatctcttagagattaggt 19820442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 19827172 - 19827204
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  19827172 attatgagtagctaaatctcttagagattaggt 19827204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 24150354 - 24150386
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  24150354 attatgagtagctaaatctcttagagattaggt 24150386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 27677494 - 27677462
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  27677494 attatgagtagctaaatctcttagagattaggt 27677462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 29324507 - 29324539
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  29324507 attatgagtagctaaatctcttagagattaggt 29324539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 38283928 - 38283896
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  38283928 attatgagtagctaaatctcttagagattaggt 38283896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 39501330 - 39501362
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  39501330 attatgagtagctaaatctcttagagattaggt 39501362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 40903523 - 40903491
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  40903523 attatgagtagctaaatctcttagagattaggt 40903491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 44164465 - 44164497
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  44164465 attatgagtagctaaatctcttagagattaggt 44164497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 48637187 - 48637219
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  48637187 attatgagtagctaaatctcttagagattaggt 48637219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 52006970 - 52006938
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  52006970 attatgagtagctaaatctcttagagattaggt 52006938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 52531375 - 52531343
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  52531375 attatgagtagctaaatctcttagagattaggt 52531343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 53094189 - 53094221
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  53094189 attatgagtagctaaatctcttagagattaggt 53094221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 391 - 422
Target Start/End: Complemental strand, 8877940 - 8877909
Alignment:
Q  391 ttatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||||||||||||||||||||||||    
T  8877940 ttatgagtagctaaatctcttagagattaggt 8877909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 422
Target Start/End: Complemental strand, 48415967 - 48415937
Alignment:
Q  392 tatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||    
T  48415967 tatgagtagctaaatctcttagagattaggt 48415937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 390 - 420
Target Start/End: Original strand, 56198535 - 56198565
Alignment:
Q  390 attatgagtagctaaatctcttagagattag 420  Q
    |||||||||||||||||||||||||||||||    
T  56198535 attatgagtagctaaatctcttagagattag 56198565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 345 - 422
Target Start/End: Complemental strand, 8449027 - 8448950
Alignment:
Q  345 atgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    |||||||| |||||  ||| ||| |||||| |||||||||     |||||||||| ||||||||||||||||||||||    
T  8449027 atgtatgttttaattatttcatttattatgctatttgtaaactcaattatgagtaactaaatctcttagagattaggt 8448950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Complemental strand, 48014508 - 48014459
Alignment:
Q  369 attatgttatttgtaattcgtattatgagtagctaaatctcttagagatt 418  Q
    ||||||||||||||||     |||||||||||||||||||||||||||||    
T  48014508 attatgttatttgtaaactcaattatgagtagctaaatctcttagagatt 48014459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 12782587 - 12782619
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||| ||||||    
T  12782587 attatgagtagctaaatctcttagaggttaggt 12782619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1684 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold1684
Description:

Target: scaffold1684; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 422
Target Start/End: Complemental strand, 128 - 48
Alignment:
Q  342 tttatgtatgtgttaatgctttaattaattatgttatttgtaattcgtattatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||| ||||| |||  ||| |||||| |||||||||     |||||||||||||||||||||||||||||||||    
T  128 tttatgtatgttttaattcttccattgattatgctatttgtaaactcaattatgagtagctaaatctcttagagattaggt 48  T

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Target: scaffold0250 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 390 - 425
Target Start/End: Original strand, 19078 - 19113
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggtttg 425  Q
    ||||||||||||||||||||||||||||||||||||    
T  19078 attatgagtagctaaatctcttagagattaggtttg 19113  T

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Target: scaffold0757 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0757
Description:

Target: scaffold0757; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 5035 - 5067
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  5035 attatgagtagctaaatctcttagagattaggt 5067  T

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Target: scaffold0427 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0427
Description:

Target: scaffold0427; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 4228 - 4196
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  4228 attatgagtagctaaatctcttagagattaggt 4196  T

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Target: scaffold0024 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 422
Target Start/End: Original strand, 84923 - 84955
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||||||    
T  84923 attatgagtagctaaatctcttagagattaggt 84955  T

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Target: scaffold0520 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 422
Target Start/End: Complemental strand, 4415 - 4387
Alignment:
Q  394 tgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||    
T  4415 tgagtagctaaatctcttagagattaggt 4387  T

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Target: scaffold0520; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 394 - 422
Target Start/End: Complemental strand, 8654 - 8626
Alignment:
Q  394 tgagtagctaaatctcttagagattaggt 422  Q
    |||||||||||||||||||||||||||||    
T  8654 tgagtagctaaatctcttagagattaggt 8626  T

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Target: scaffold0126 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 390 - 422
Target Start/End: Complemental strand, 114 - 82
Alignment:
Q  390 attatgagtagctaaatctcttagagattaggt 422  Q
    ||||||||||||||||||||||||| |||||||    
T  114 attatgagtagctaaatctcttagaaattaggt 82  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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