View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19828_low_9 (Length: 531)
Name: NF19828_low_9
Description: NF19828
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19828_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 25615270 - 25615501
Alignment:
| Q |
10 |
attattctctgtattgcaatggtattttgccgtatgcgaaaactcaagggtagtttggaatttagatgaatttgagtgttggttaaataatttgttaatt |
109 |
Q |
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| T |
25615270 |
attattctctgtattgcaatggtattttgccgtatgcgaaaactcaagagtagtttggaatttagatgaatttgagtgttggtaaaataatttgttaatt |
25615369 |
T |
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| Q |
110 |
taaatgtctgagatggtgttgtgttctgtttttatggttttcttcttgttaattttctgtttataattcaaaactttggcacttttagtgatcatgttat |
209 |
Q |
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| T |
25615370 |
taaatgtctgagatggtgttgtgttctgtttttatggttttcttcttgttaattttctgtttataattcaaaacttttgcacttttagtgatcatgttat |
25615469 |
T |
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| Q |
210 |
tctatataatgaagtttatctttgcttatata |
241 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
25615470 |
tctatataatgaagtttatctttgcttatata |
25615501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 74 - 170
Target Start/End: Original strand, 25609684 - 25609784
Alignment:
| Q |
74 |
gatgaatttgagtgttggttaa---ataatttgttaatttaaatgtctgagatggtgttgtgttctgtttttatggttttcttctt-gttaattttctgt |
169 |
Q |
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| T |
25609684 |
gatgaatttgggtgttggttaattaataatttattcatttcaatgtctgagatggtgttgtgttctattttaatgagttttttcttggttaagtttctgt |
25609783 |
T |
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| Q |
170 |
t |
170 |
Q |
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| T |
25609784 |
t |
25609784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 320 - 448
Target Start/End: Original strand, 35748591 - 35748719
Alignment:
| Q |
320 |
tgagaaattgaggtcgatgcttcagcgcatgatagcagaggaagttaggaattatgttgataagatacgccttggtggtgggttagctcctgattcaaca |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
35748591 |
tgagaaattgaggtcgatgcttcagcgcatgatagcagaggaagttaggaattatgttgataagatgcgccttggtggtgggttagctcctgattcaaca |
35748690 |
T |
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| Q |
420 |
cttcgaaagtgaaaaaatttcaatatata |
448 |
Q |
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| T |
35748691 |
cttcgaaagtgaaaaaatttcaatatata |
35748719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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