View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19829_high_18 (Length: 372)

Name: NF19829_high_18
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19829_high_18
NF19829_high_18
[»] scaffold2079 (1 HSPs)
scaffold2079 (39-372)||(776-1106)
[»] chr7 (8 HSPs)
chr7 (1-321)||(6242601-6242926)
chr7 (2-325)||(6346339-6346677)
chr7 (4-153)||(6325747-6325896)
chr7 (4-153)||(6333224-6333373)
chr7 (1-153)||(6219620-6219772)
chr7 (211-321)||(6325984-6326094)
chr7 (211-321)||(6333461-6333571)
chr7 (338-372)||(6326201-6326235)


Alignment Details
Target: scaffold2079 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: scaffold2079
Description:

Target: scaffold2079; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 39 - 372
Target Start/End: Complemental strand, 1106 - 776
Alignment:
Q  39 aaacccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatggaagga 138  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  1106 aaacccaaataaatccaagcaattgtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatgggagga 1007  T
Q  139 aactattgatgtgaagctgcaccaaagctaggtagtaaagaaaaatcgcaaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgc 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||   |||||||||||| ||||||||||||||||||    
T  1006 aactattgatgtgaagctgcaccaaagctaggtagtaaagaaaaatggcaaaaaccaaagccatca---gtagagattttcggttgcttgtattcattgc 910  T
Q  239 tgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaataaataaaatattagaag 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  909 tgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaataaataaaatattagaag 810  T
Q  339 aaacagagtaagttaatgttcgagtagtgattga 372  Q
    |||||||||||||||||||| |||||||||||||    
T  809 aaacagagtaagttaatgtttgagtagtgattga 776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 6242926 - 6242601
Alignment:
Q  1 gattcttatagaacatcaaagcaaagattaagaaccagaaacccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaac 100  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||          ||||||||||||| |||    
T  6242926 gattcttatagaacatcaaagcaaagattaagatccacaaacccaaataaatccaagcaattgtcggcgaaat----------gctaaaattgaaataac 6242837  T
Q  101 acttccaagtaaaagaattaccatcatgaatggaaggaaactattgatgtgaagctg---------------caccaaagctaggtagtaaagaaaaatc 185  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||               |||||||||||||||||||||||||||     
T  6242836 acttccaagtaaaagaattaccatcatgtatggaaggaaactattgatgtgaagctgtaacattgtcacaagcaccaaagctaggtagtaaagaaaaata 6242737  T
Q  186 gcaaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaata 285  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  6242736 gcgaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaatagcttgaaaaattggccaaata 6242637  T
Q  286 attctccaacttcattcaatctagaaagggttgaat 321  Q
    ||||||||||||||||||||||||||||||||||||    
T  6242636 attctccaacttcattcaatctagaaagggttgaat 6242601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 2 - 325
Target Start/End: Original strand, 6346339 - 6346677
Alignment:
Q  2 attcttatagaacatcaaagcaaagattaagaaccagaaacccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaaca 101  Q
    ||||| |||| ||||||||||||||| ||||| ||| || |||||| ||||||||||||| || || ||||| | |||||| |||| || ||||||||||    
T  6346339 attctcatagcacatcaaagcaaagagtaagatccacaagcccaaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaaca 6346438  T
Q  102 cttccaagtaaaagaattaccatcatgaatggaaggaaactattgatgtgaagct---------------gcaccaaagctaggtagtaaagaaaaatcg 186  Q
    ||||||||||||| ||| ||||||||||||||||||||  | |||||||||||||               |||||||| | | ||||||||||  || |     
T  6346439 cttccaagtaaaacaataaccatcatgaatggaaggaagttcttgatgtgaagctgtagcattgtcacaagcaccaaaaccaagtagtaaagagcaacca 6346538  T
Q  187 caaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataa 286  Q
      ||||||||||||||||  ||| | |||||| || | ||||||||| ||| ||||||||| |  ||||| |||||| |||  ||||||||||  ||||     
T  6346539 tgaaaaccaaagccatcagaagtggtgatttttcgatacttgtattcgttgttgcaaacccaattattgcgaacaatagctcaaaaaattggcttaatag 6346638  T
Q  287 ttctccaacttcattcaatctagaaagggttgaataaat 325  Q
    || ||||||||||||||| ||||||||||||||||||||    
T  6346639 ttttccaacttcattcaagctagaaagggttgaataaat 6346677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 6325747 - 6325896
Alignment:
Q  4 tcttatagaacatcaaagcaaagattaagaaccagaaacccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaacact 103  Q
    |||||||| |||||||||||||||| |||| ||| ||||||||||||||||| ||||| ||||||||||||||||| || ||||||||||||||||||||    
T  6325747 tcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacact 6325846  T
Q  104 tccaagtaaaagaattaccatcatgaatggaaggaaactattgatgtgaa 153  Q
    ||||||||||||||| | |||| || | |||| ||| || ||||||||||    
T  6325847 tccaagtaaaagaatgatcatcttggaaggaatgaatctcttgatgtgaa 6325896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 6333224 - 6333373
Alignment:
Q  4 tcttatagaacatcaaagcaaagattaagaaccagaaacccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaacact 103  Q
    |||||||| |||||||||||||||| |||| | | ||||||||||||||||||||||| || || ||||| | |||||| ||||||| ||||||||||||    
T  6333224 tcttatagcacatcaaagcaaagatgaagatcaacaaacccaaataaatccaagcaattgtaggagaaattatcatcaaagctaaaactgaaacaacact 6333323  T
Q  104 tccaagtaaaagaattaccatcatgaatggaaggaaactattgatgtgaa 153  Q
    ||||||||||||||| | |||| || | |||| |||||| ||||||||||    
T  6333324 tccaagtaaaagaatgatcatcttggaaggaaagaaactcttgatgtgaa 6333373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 6219772 - 6219620
Alignment:
Q  1 gattcttatagaacatcaaagcaaagattaagaaccagaaacccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaac 100  Q
    |||||| |||| ||||||||| ||||| ||||| ||| || | |||| ||||||||||||| || || ||||| | |||||| |||| || |||||||||    
T  6219772 gattctcatagcacatcaaagaaaagagtaagatccacaagcacaaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaac 6219673  T
Q  101 acttccaagtaaaagaattaccatcatgaatggaaggaaactattgatgtgaa 153  Q
    |||||||||||||| ||| |||||||||||||||||||| || ||||||||||    
T  6219672 acttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaa 6219620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 321
Target Start/End: Original strand, 6325984 - 6326094
Alignment:
Q  211 gagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctaga 310  Q
    |||| ||||| || ||||| ||||||   |||||||||| ||||||||||||| ||| |||||||||||||||||||| ||| ||||| |||||||||||    
T  6325984 gagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctaga 6326083  T
Q  311 aagggttgaat 321  Q
    || ||||||||    
T  6326084 aatggttgaat 6326094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 321
Target Start/End: Original strand, 6333461 - 6333571
Alignment:
Q  211 gagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctaga 310  Q
    |||| ||||| || ||||| ||||||   |||||||||| ||||||||||||| ||| |||||||||||||||||||| ||| ||||| |||||||||||    
T  6333461 gagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctaga 6333560  T
Q  311 aagggttgaat 321  Q
    || ||||||||    
T  6333561 aatggttgaat 6333571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 372
Target Start/End: Original strand, 6326201 - 6326235
Alignment:
Q  338 gaaacagagtaagttaatgttcgagtagtgattga 372  Q
    ||||||||||||||||||||| |||||||||||||    
T  6326201 gaaacagagtaagttaatgtttgagtagtgattga 6326235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University