View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_high_21 (Length: 352)
Name: NF19829_high_21
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_high_21 |
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Alignment Details
Target: chr8 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 38942954 - 38942708
Alignment:
| Q |
1 |
gaatttagtaggaatgagagttatgaatatgactgtggttgggtggttgattgaattgcagggtaatttggaacgggaagtgattgtgtacaactaaagg |
100 |
Q |
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| T |
38942954 |
gaatttagtaggaatgagagttatgaatatgactgtggttgggtggttgattgaattgcagggtaatttggaatgggaagtgattgtgtacaactaaa-g |
38942856 |
T |
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| Q |
101 |
gagatgagattattgtgatagtatgaattgttgaggttgttgtgattgtctattctttttactatgaagccatttcctgtgtgtgtagattcagttgagn |
200 |
Q |
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| T |
38942855 |
gaggtgggattattgtggtagtatgaattgttgaggttgttgtcattgtctattctttttactctgaagccatttcctctgtgtgtagattcagttgagt |
38942756 |
T |
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| Q |
201 |
nnnnnnngtagaagtagattcaggaaagttttttgaaaaggaaaacag |
248 |
Q |
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| T |
38942755 |
tttttaggtacaagtagattcaggaaagctttttgaaaaggaaaacag |
38942708 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 194
Target Start/End: Original strand, 13723893 - 13724013
Alignment:
| Q |
76 |
ggaagtgattgtgtacaactaaagggagatgagattattgtg--atagtatgaattgttgaggttgttgtgattgtctattctttttactatgaagccat |
173 |
Q |
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| T |
13723893 |
ggaagtgattgtgttgagctaaaaggagatgaaattattgtagaattgtatgagctattgaggttgttaacattgtgtatgcttttttccaagaagccat |
13723992 |
T |
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| Q |
174 |
ttcctgtgtgtgtagattcag |
194 |
Q |
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| T |
13723993 |
ttcctgtgtttttagattcag |
13724013 |
T |
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