View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19829_high_25 (Length: 320)
Name: NF19829_high_25
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_high_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 2347308 - 2347609
Alignment:
| Q |
1 |
tacaagtgagttgaacaatagtcacataatttgcaattcatgttggtacgggtttgcggtacgcgtcatgtgaatgatgtgttgtgatgcaattgttccc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2347308 |
tacaagtgagttgaaccatagtcacataatttgcaattcatgttggtacgggtttgcggtacgcgacatgtgaatgatgtgttgtgatgcaattgttccc |
2347407 |
T |
|
| Q |
101 |
ttaaaagtttgtctatcatttttaccctgcattttgattattttggttaaatgaatcttagcattttgtttgagttttaccgtggccacacatagaaact |
200 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2347408 |
ttaaaagtttgtctatcatttttactctgcattttgattattttggttaaatgaatcttagcattttgtttgagttttaccgtggccacacatagaaact |
2347507 |
T |
|
| Q |
201 |
tgctttaagaagcatgtctagagctaagccaatagaaaaacacttcagctgcaatgattgtagagttcctgggaatgtggatgaagaaagagcagaactt |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2347508 |
tgctttaagaagcatgtctagatctaagccaatagaaaaacacttcagctgcaatgattgtagagttactgggaatgtggatgaagaaagagcagaactt |
2347607 |
T |
|
| Q |
301 |
gt |
302 |
Q |
| |
|
|| |
|
|
| T |
2347608 |
gt |
2347609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 178
Target Start/End: Complemental strand, 2489987 - 2489947
Alignment:
| Q |
138 |
ttattttggttaaatgaatcttagcattttgtttgagtttt |
178 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
2489987 |
ttattttggttaaacgattcttagcattttgtttgagtttt |
2489947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 138 - 186
Target Start/End: Original strand, 2626459 - 2626507
Alignment:
| Q |
138 |
ttattttggttaaatgaatcttagcattttgtttgagttttaccgtggc |
186 |
Q |
| |
|
||||||||| ||||||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
2626459 |
ttattttggataaatgattcttagcatttcatttgagttttactgtggc |
2626507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University