View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19829_high_28 (Length: 309)

Name: NF19829_high_28
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19829_high_28
NF19829_high_28
[»] chr2 (1 HSPs)
chr2 (43-298)||(3915888-3916146)
[»] chr3 (11 HSPs)
chr3 (49-191)||(16035451-16035593)
chr3 (49-141)||(16061608-16061700)
chr3 (73-141)||(16046093-16046161)
chr3 (46-145)||(52651341-52651440)
chr3 (49-191)||(16052207-16052349)
chr3 (48-145)||(31682480-31682577)
chr3 (48-145)||(31895855-31895952)
chr3 (48-145)||(31900439-31900536)
chr3 (48-145)||(31916148-31916245)
chr3 (48-145)||(31949796-31949893)
chr3 (49-141)||(16057462-16057554)


Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 43 - 298
Target Start/End: Original strand, 3915888 - 3916146
Alignment:
Q  43 actctatatcaaggaatgcccattttttattccaagacttgatc---ccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaatt 139  Q
    ||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  3915888 actctatatcaaggaatgcccattttttattccaagacttgatcggcccaagacaggaaagtactggcgcaaggtggctcatatccaacatatcgaaatt 3915987  T
Q  140 gatgaccgaagagttcgggaatatagttatagatatggatgaccaaaaagcttgatgtttggatttcgtgactctaaatgtattttctctacatagcttt 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  3915988 gatgaccgaagagttcgggaatatagttatagatatggatgaccaaaaagcttgatgtttggatttcgtgactctaaatttattttctctacatagcttt 3916087  T
Q  240 gtaggatagataatatttgcttcacnnnnnnnacctttaactttactatttttgttcat 298  Q
    |||||||||||||||||||||||||       |||||||||||||||||||||||||||    
T  3916088 gtaggatagataatatttgcttcactttttttacctttaactttactatttttgttcat 3916146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 191
Target Start/End: Complemental strand, 16035593 - 16035451
Alignment:
Q  49 tatcaaggaatgcccattttttattccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgaccga 148  Q
    ||||| |||||||||| | || | |||||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||| |||||||| |||       
T  16035593 tatcagggaatgcccaatgttgactccaagacttgaacccaagacaggaaagtactggcacaaggtggctcatatctaacatatagaaattgaagacaag 16035494  T
Q  149 agagttcgggaatatagttatagatatggatgaccaaaaagct 191  Q
    |||||| |||||  |  ||||||||||  |||| |||||||||    
T  16035493 agagtttgggaaccttcttatagatattaatgagcaaaaagct 16035451  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 16061700 - 16061608
Alignment:
Q  49 tatcaaggaatgcccattttttattccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattga 141  Q
    ||||| |||||||||| | || | |||||||||||| |||||||||||||| ||||||| ||||||||||||||| |||||||| ||||||||    
T  16061700 tatcagggaatgcccaatgttgactccaagacttgaacccaagacaggaaagtactggcacaaggtggctcatattcaacatatagaaattga 16061608  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 16046161 - 16046093
Alignment:
Q  73 tccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattga 141  Q
    |||||||||||| |||||||||||||| ||||||| |||| ||||||||||| ||||||| ||||||||    
T  16046161 tccaagacttgaacccaagacaggaaagtactggcacaagatggctcatatctaacatatagaaattga 16046093  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 46 - 145
Target Start/End: Complemental strand, 52651440 - 52651341
Alignment:
Q  46 ctatatcaaggaatgcccattttttattccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgac 145  Q
    |||||||| ||| |||||| | || | |||||||||| | ||||||| |||||| ||||||||||||||||||||||| |  ||||| ||||||||||||    
T  52651440 ctatatcagggagtgcccaatgttgactccaagacttaaacccaagaaaggaaagtactggcgcaaggtggctcatattcctcatatagaaattgatgac 52651341  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 191
Target Start/End: Complemental strand, 16052349 - 16052207
Alignment:
Q  49 tatcaaggaatgcccattttttattccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgaccga 148  Q
    ||||| |||||||||| | || | |||||||||||| || |||| | |||| ||||||| |||||||| ||||||||||||||| |||||||| |||       
T  16052349 tatcagggaatgcccaatgttgactccaagacttgaacctaagaaacgaaagtactggcacaaggtggatcatatccaacatatagaaattgaagacaag 16052250  T
Q  149 agagttcgggaatatagttatagatatggatgaccaaaaagct 191  Q
    |||||| |||||  |  ||||||||||  |||| |||||||||    
T  16052249 agagtttgggaaccttcttatagatattaatgagcaaaaagct 16052207  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 145
Target Start/End: Complemental strand, 31682577 - 31682480
Alignment:
Q  48 atatcaaggaatgcccattttttattccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgac 145  Q
    |||||| ||| |||||| | || | |||||||||| | ||| |||||||||| |||||| |||||||||||||||| |  ||||| ||||||||||||    
T  31682577 atatcagggattgcccagtgttgactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgac 31682480  T

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Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 31895855 - 31895952
Alignment:
Q  48 atatcaaggaatgcccattttttattccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgac 145  Q
    |||||| ||| |||||| | || | |||||||||| | ||| |||||||||| |||||| |||||||||||||||| |  ||||| ||||||||||||    
T  31895855 atatcagggattgcccagtgttgactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgac 31895952  T

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Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 31900439 - 31900536
Alignment:
Q  48 atatcaaggaatgcccattttttattccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgac 145  Q
    |||||| ||| |||||| | || | |||||||||| | ||| |||||||||| |||||| |||||||||||||||| |  ||||| ||||||||||||    
T  31900439 atatcagggattgcccagtgttgactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgac 31900536  T

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Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 31916148 - 31916245
Alignment:
Q  48 atatcaaggaatgcccattttttattccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgac 145  Q
    |||||| ||| |||||| | || | |||||||||| | ||| |||||||||| |||||| |||||||||||||||| |  ||||| ||||||||||||    
T  31916148 atatcagggattgcccagtgttgactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgac 31916245  T

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Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 145
Target Start/End: Original strand, 31949796 - 31949893
Alignment:
Q  48 atatcaaggaatgcccattttttattccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattgatgac 145  Q
    |||||| ||| |||||| | || | |||||||||| | ||| |||||||||| |||||| |||||||||||||||| |  ||||| ||||||||||||    
T  31949796 atatcagggattgcccagtgttgactccaagacttaaacccgagacaggaaagtactggtgcaaggtggctcatattcctcatatagaaattgatgac 31949893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 16057554 - 16057462
Alignment:
Q  49 tatcaaggaatgcccattttttattccaagacttgatcccaagacaggaaactactggcgcaaggtggctcatatccaacatatcgaaattga 141  Q
    ||||| |||||||||| | || | |||||||||||| ||||||| |||||  || |||| |||||||||| |||| |||||||| ||||||||    
T  16057554 tatcagggaatgcccaatgttgactccaagacttgaacccaagataggaatgtattggctcaaggtggcttatattcaacatatagaaattga 16057462  T

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