View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_high_33 (Length: 273)
Name: NF19829_high_33
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 41631665 - 41631403
Alignment:
| Q |
1 |
ctccttttgcttggagacttcattcttttcaaagaagataaagtctgctatgacaaaacaaaatatgctattcctaacacaaacaaaagaaaaaatcaga |
100 |
Q |
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| T |
41631665 |
ctccttttgcttggagacttcattcttttcaaagaagataaagtctgctatgacaaaacaaaatatactattcctaacacaaacaaaagaaaaaatcaga |
41631566 |
T |
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| Q |
101 |
ttcagaaatttttgtgactcttaaaaatttctagtttcttagtnnnnnnnnnnnnnnnnntcctagttagttctgtaatttcttccagagcatccaatcc |
200 |
Q |
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| T |
41631565 |
ttcagaaatttttgtgactcttaaaaatttatagtttcttagtaaaaaataaaataaaaatcctagttagttctgtaatttcttccagagcatccaatcc |
41631466 |
T |
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| Q |
201 |
aaacactgaaaaagaaactaatagtgcagtcctattgacttctttcatcattaaccgtctctg |
263 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
41631465 |
aaacactgaaaaagaaactaatagtgcagtcctattggcttctttcatcattaaccgtttctg |
41631403 |
T |
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