View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19829_high_4 (Length: 599)

Name: NF19829_high_4
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19829_high_4
NF19829_high_4
[»] chr1 (23 HSPs)
chr1 (18-588)||(15243839-15244410)
chr1 (18-179)||(47900693-47900854)
chr1 (18-148)||(19705421-19705551)
chr1 (314-585)||(39440525-39440795)
chr1 (418-526)||(1972116-1972224)
chr1 (418-537)||(26099888-26100006)
chr1 (18-190)||(15877232-15877404)
chr1 (418-570)||(19709223-19709375)
chr1 (311-537)||(47900273-47900500)
chr1 (37-192)||(33078309-33078464)
chr1 (314-572)||(6240994-6241253)
chr1 (76-191)||(23412470-23412585)
chr1 (30-124)||(6240631-6240725)
chr1 (406-471)||(15731390-15731455)
chr1 (417-514)||(33078816-33078912)
chr1 (18-148)||(19708159-19708289)
chr1 (406-459)||(26780495-26780548)
chr1 (477-580)||(15731835-15731938)
chr1 (107-162)||(26780913-26780968)
chr1 (321-363)||(1972018-1972060)
chr1 (406-455)||(21501895-21501944)
chr1 (314-362)||(19709118-19709166)
chr1 (314-350)||(33078713-33078749)
[»] chr4 (15 HSPs)
chr4 (23-244)||(7355289-7355510)
chr4 (18-192)||(10178840-10179014)
chr4 (25-192)||(4224817-4224984)
chr4 (18-190)||(19943447-19943619)
chr4 (380-590)||(12109953-12110164)
chr4 (418-565)||(50688483-50688630)
chr4 (406-585)||(10179277-10179455)
chr4 (77-192)||(37239382-37239496)
chr4 (314-515)||(4225232-4225433)
chr4 (413-588)||(7354895-7355070)
chr4 (418-504)||(30500428-30500514)
chr4 (70-162)||(22271132-22271224)
chr4 (17-143)||(39327822-39327948)
chr4 (107-161)||(51461098-51461152)
chr4 (425-461)||(19941017-19941053)
[»] chr2 (12 HSPs)
chr2 (327-585)||(27467289-27467547)
chr2 (22-192)||(17558787-17558957)
chr2 (27-180)||(27467814-27467964)
chr2 (416-536)||(17558388-17558508)
chr2 (27-161)||(25677489-25677623)
chr2 (28-161)||(24927866-24927999)
chr2 (406-461)||(25895373-25895428)
chr2 (418-588)||(9789868-9790038)
chr2 (404-467)||(5369920-5369983)
chr2 (417-460)||(21822502-21822545)
chr2 (96-155)||(33856447-33856506)
chr2 (417-458)||(33856015-33856056)
[»] chr7 (23 HSPs)
chr7 (18-268)||(2478465-2478714)
chr7 (314-588)||(984109-984383)
chr7 (418-585)||(2476677-2476844)
chr7 (30-190)||(12866110-12866270)
chr7 (70-289)||(26573126-26573345)
chr7 (38-179)||(983705-983846)
chr7 (321-588)||(16803412-16803676)
chr7 (320-588)||(26572699-26572971)
chr7 (18-167)||(1781357-1781506)
chr7 (18-155)||(23103102-23103239)
chr7 (327-527)||(12865731-12865932)
chr7 (18-190)||(8859476-8859648)
chr7 (319-590)||(29542125-29542395)
chr7 (18-155)||(8858845-8858982)
chr7 (423-518)||(8876424-8876519)
chr7 (18-155)||(8875869-8876005)
chr7 (18-167)||(16803091-16803236)
chr7 (27-148)||(7228075-7228197)
chr7 (29-162)||(25992364-25992497)
chr7 (316-368)||(7228498-7228550)
chr7 (81-160)||(19856880-19856959)
chr7 (530-588)||(5057101-5057159)
chr7 (17-55)||(26573348-26573386)
[»] chr5 (9 HSPs)
chr5 (18-192)||(17468391-17468564)
chr5 (406-588)||(17468840-17469021)
chr5 (418-588)||(23361421-23361590)
chr5 (36-150)||(15608272-15608386)
chr5 (26-77)||(23360907-23360958)
chr5 (116-192)||(43582553-43582629)
chr5 (27-162)||(27892825-27892959)
chr5 (24-126)||(16510576-16510678)
chr5 (556-588)||(16511191-16511223)
[»] chr8 (13 HSPs)
chr8 (23-192)||(30122866-30123035)
chr8 (418-588)||(19452541-19452711)
chr8 (418-588)||(19528365-19528535)
chr8 (18-132)||(7634632-7634746)
chr8 (454-588)||(30122385-30122520)
chr8 (447-588)||(13217878-13218019)
chr8 (314-410)||(30122524-30122620)
chr8 (318-364)||(7635064-7635110)
chr8 (109-162)||(22541133-22541186)
chr8 (314-363)||(25233536-25233585)
chr8 (498-585)||(37379023-37379110)
chr8 (318-363)||(13218105-13218150)
chr8 (37-114)||(29452909-29452986)
[»] chr3 (9 HSPs)
chr3 (18-190)||(861907-862077)
chr3 (314-487)||(862324-862497)
chr3 (29-192)||(48559328-48559491)
chr3 (18-129)||(27902675-27902788)
chr3 (415-588)||(48559107-48559280)
chr3 (417-453)||(4287889-4287925)
chr3 (418-502)||(32090626-32090710)
chr3 (421-471)||(7720872-7720922)
chr3 (107-155)||(4288230-4288278)
[»] chr6 (2 HSPs)
chr6 (314-588)||(14274596-14274871)
chr6 (21-252)||(14274183-14274414)
[»] scaffold0037 (1 HSPs)
scaffold0037 (90-162)||(107643-107715)
[»] scaffold0004 (2 HSPs)
scaffold0004 (124-191)||(119144-119211)
scaffold0004 (418-532)||(119573-119686)


Alignment Details
Target: chr1 (Bit Score: 481; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 18 - 588
Target Start/End: Original strand, 15243839 - 15244410
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  15243839 ttatcccccataatgaacaagaaattgagtgaatgcatgacctaaaacatctaatcagtgactatttaggaatttatggttttaattaatttttagtgtt 15243938  T
Q  118 atttgatcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagatctcgggcgcaacaaattggaattgaag 217  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15243939 atttgatcattttgaactagtaatgcttgttttggatgattgatggaacagggtgaagaatggcactggagatctcgggcgcaacaaattggaattgaag 15244038  T
Q  218 ttgcatatctgaagatataggaagatgcagcatactagatcgtcatccgggtcgtactatttacgaac---tcatacggtctcgtttatctttgcttaat 314  Q
    ||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||   |||||||||| ||||||||||||||||||    
T  15244039 ttgtatatctcaagatataggaagatgtagcatactagatcgtcatccgggtcgtactatttacgaactgatcatacggtcccgtttatctttgcttaat 15244138  T
Q  315 ggttggccttgaactataaaaggacaaccacatgttagtaccaagggtcaaaaattgtacactcttgaattgagtggccaagtccaaccatggttagtag 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| || | |||||||| ||    
T  15244139 ggttggccttgaactataaaaggacaaccacatgttagtaccaagggtcaaaaattgtaca--cttgaattgagtggccaagttcagctatggttagcag 15244236  T
Q  415 cattagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctc 514  Q
    || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15244237 cactagagttctcactccatctcatcttctctatagatgagcatgagagctagttctcaattatttagagctaggattatttaggtgatgatttaagctc 15244336  T
Q  515 acctccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgttttcat 588  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15244337 acctccttcctttgtggattgtaatcttctattaactatattttatctatcaatttagtttttcatgttttcat 15244410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 18 - 179
Target Start/End: Complemental strand, 47900854 - 47900693
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    |||||||| ||||||||||||||| ||||||||||||||| |||||||||| |||||  |||||||||| ||||||| |||||||||| |||||||| |     
T  47900854 ttatcccctataatgaacgagaaaatgagtgaatgcatgaactaaaacatctaatcaccgactatttaggaatttattgttttaattagtttttagtgta 47900755  T
Q  118 atttgatcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatg 179  Q
     |||||||||||| || |||||||| ||||||  ||||  |||||||||  | |||||||||    
T  47900754 gtttgatcattttaaattagtaatgtttgtttaagatgtctgatggaacgtgatgaagaatg 47900693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 19705421 - 19705551
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    |||||||||||||   | ||||||||||||| ||||||| |||| |||||  ||||||||||||||||| | ||||||||| | | ||| ||||||| ||    
T  19705421 ttatcccccataacctatgagaaattgagtgtatgcatggcctataacatataatcagtgactatttaggagtttatggttgtgagtaacttttagtgtt 19705520  T
Q  118 atttgatcattttgaactagtaatgcttgtt 148  Q
    |||| ||||||||||||||||||||||||||    
T  19705521 atttaatcattttgaactagtaatgcttgtt 19705551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 314 - 585
Target Start/End: Complemental strand, 39440795 - 39440525
Alignment:
Q  314 tggttggccttgaactataaaaggacaaccacatgttagtaccaagggtcaaaaattgtacactcttgaattgagtggccaagt-ccaaccatggttagt 412  Q
    ||||||| |||  |||||||||||||||||||||||||||  ||||||||  | ||| |||||    |||||||| | |||||| |||   | ||||||     
T  39440795 tggttggtcttatactataaaaggacaaccacatgttagtgtcaagggtccgatattttacacaac-gaattgagagaccaagttccagttagggttagg 39440697  T
Q  413 agcattagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagc 512  Q
    |||| ||||||| ||||| ||| |||||||||  ||||||||||||||| | || |||| | | | |||||||||||||||  | ||||||| ||| |||    
T  39440696 agcactagagttttcacttcatatcatcttctccatagatgagcatgagtgttatttcttagtaaattagagttaggattacgt-ggtgatgtttttagc 39440598  T
Q  513 tcacctccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgtttt 585  Q
    |||||||  ||||    |||||||| |||| || || || |||||||| ||||||||||||||||||||||||    
T  39440597 tcacctctctcctacaaggattgtaatcttgtactagctttattttatatatcaatttagtttttcatgtttt 39440525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 418 - 526
Target Start/End: Original strand, 1972116 - 1972224
Alignment:
Q  418 tagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacc 517  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||| ||||||||| |  ||  |||||||||||||| || ||||||| || |||||||||    
T  1972116 tagagttgtcacttcatctcatcttcttcatagatgagcatgagtgctagttcttagataactagagttaggattactttggtgatgcttcaagctcacc 1972215  T
Q  518 tccttcctt 526  Q
    || ||||||    
T  1972216 tctttcctt 1972224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 418 - 537
Target Start/End: Original strand, 26099888 - 26100006
Alignment:
Q  418 tagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacc 517  Q
    |||||||||| ||||||||||||||| | ||||||||||||||| ||||||||| | | | |||||||||  |||| || ||||||| ||||||||||||    
T  26099888 tagagttctccctccatctcatcttcctcatagatgagcatgagtgctagttcttagtgaattagagttataattactttggtgatg-tttaagctcacc 26099986  T
Q  518 tccttcctttgtggattgta 537  Q
    || ||| |||||||| ||||    
T  26099987 tctttcatttgtggagtgta 26100006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 15877232 - 15877404
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    ||||||| |||||||||| | ||||| | |||||||||  |||||| |||| |||||||| || | ||| | ||||| | ||||| || |||||||| ||    
T  15877232 ttatcccacataatgaacaataaatttaatgaatgcattgcctaaagcatctaatcagtggctttctaggattttatagctttaagtagtttttagtgtt 15877331  T
Q  118 atttgatcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagat 190  Q
    | || |||||||||||||||||||| ||||| |||||| |||||   ||| | ||| ||||||| ||||||||    
T  15877332 aattaatcattttgaactagtaatgattgttgtggatgtttgattatacatgatgaggaatggctctggagat 15877404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 418 - 570
Target Start/End: Original strand, 19709223 - 19709375
Alignment:
Q  418 tagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacc 517  Q
    ||||||||||||||||||||||||||||  ||||||| ||||||  ||| |||| | | ||||| ||||||||||| |||||||||| || |||||| ||    
T  19709223 tagagttctcactccatctcatcttcttcttagatgaacatgagttctacttcttagtgatttaaagttaggattacttaggtgatgcttcaagctcgcc 19709322  T
Q  518 tccttcctttgtggattgtattcttctattaactatattttatctatcaattt 570  Q
    || ||| ||  |||| |||| | |  | |||||| |||||||||||| |||||    
T  19709323 tctttctttgttggagtgtaatatgttcttaactctattttatctattaattt 19709375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 311 - 537
Target Start/End: Complemental strand, 47900500 - 47900273
Alignment:
Q  311 taatggttggccttgaactataaaaggacaaccacatgttagtaccaa-gggtcaaaaattgtacactcttgaattgagtggccaagt-ccaaccatggt 408  Q
    ||||||||| ||||  |||||||||||||||| ||||||||||  ||| |||||   |||| ||||||  ||||||||| || ||||| ||| | | |||    
T  47900500 taatggttgaccttacactataaaaggacaacaacatgttagtgtcaaagggtcctgaattttacacttgtgaattgagcggtcaagttccatctagggt 47900401  T
Q  409 tagtagcattagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgattt 508  Q
     ||||||| ||| ||||||||||| |||||||||||  ||||| ||||||||   |||| ||| | | | |||||||||| ||||||| ||||||| ||     
T  47900400 gagtagcactagcgttctcactccttctcatcttctccatagacgagcatgaattctaggtcttagtga-ttagagttagtattatttgggtgatgcttc 47900302  T
Q  509 aagctcacctccttcctttgtggattgta 537  Q
    | ||||||||| ||||||  |||||||||    
T  47900301 atgctcacctctttccttcttggattgta 47900273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 37 - 192
Target Start/End: Original strand, 33078309 - 33078464
Alignment:
Q  37 agaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttatttgatcattttgaacta 136  Q
    ||||||||| ||||||  |  ||||||| ||| ||||||||||||||||| | ||||  |||||||||| |||||||| ||| ||  |||||||||||||    
T  33078309 agaaattgaatgaatgttttgcctaaaatatctaatcagtgactatttaggattttagagttttaattagtttttagtgttaattactcattttgaacta 33078408  T
Q  137 gtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagatct 192  Q
     | |||||||||||| ||| ||||||  ||| | ||| ||||||| || |||||||    
T  33078409 atgatgcttgttttgaatgtttgatgatacaagatgaggaatggctctagagatct 33078464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 314 - 572
Target Start/End: Original strand, 6240994 - 6241253
Alignment:
Q  314 tggttggccttgaactataaaaggacaaccacatgttagtaccaagggtcaaaaattgtacactcttgaattgagtggccaagt-ccaaccatggttagt 412  Q
    |||||| ||||| |||||||| ||||||||||||| |||| | | | |||   |||| |||| | | |||||||| | |||||| ||||| || ||||      
T  6240994 tggttgaccttgtactataaagggacaaccacatggtagtgctaggagtcctgaattttacattgt-gaattgagcgaccaagttccaactatagttaac 6241092  T
Q  413 agcattagagttctcactccatctcatcttctttatagatgagcatgagagctagtt-ctcaattatttagagttaggattatttaggtgatgatttaag 511  Q
    |||| |||||||||||||||||||||||||||  ||| ||||||||| | ||||||| || ||  |   ||||||| | ||| |||||||||| || |||    
T  6241093 agcactagagttctcactccatctcatcttctacatatatgagcatgtgtgctagttccttaaaaaaaaagagttaaggttacttaggtgatgcttaaag 6241192  T
Q  512 ctcacctccttcctttgtggattgtattcttctattaactatattttatctatcaatttag 572  Q
    ||||| |  ||||||  ||||||||| | |  ||||||||| ||||||||| |||||||||    
T  6241193 ctcacatatttccttcttggattgtaatatgttattaactacattttatctttcaatttag 6241253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 23412585 - 23412470
Alignment:
Q  76 tgactatttagaaatttatggttttaattaatttttagtcttatttgatcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaag 175  Q
    ||||||||| | |||||||| |||||  ||||||||||| |||||| |||||||||||||||||||| ||||| | |||| ||  ||||||| | |||||    
T  23412585 tgactattttggaatttatgattttatataatttttagtgttatttaatcattttgaactagtaatggttgttatagatgttttgtggaacatgatgaag 23412486  T
Q  176 aatggcactggagatc 191  Q
    | | ||| ||||||||    
T  23412485 agttgcattggagatc 23412470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 30 - 124
Target Start/End: Original strand, 6240631 - 6240725
Alignment:
Q  30 atgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttatttgat 124  Q
    ||||| |||||||| | ||||||||||||||||| | || ||||||| |||||| ||  |||||||| |||||||| |||||||| |||||||||    
T  6240631 atgaatgagaaattaaatgaatgcatgacctaaagcgtctaatcagtaactattcaggcatttatgggtttaattagtttttagtgttatttgat 6240725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 406 - 471
Target Start/End: Original strand, 15731390 - 15731455
Alignment:
Q  406 ggttagtagcattagagttctcactccatctcatcttctttatagatgagcatgagagctagttct 471  Q
    |||||| |||| | |||||||||||||||||||||||||  ||||||||||||||| |||||||||    
T  15731390 ggttagcagcactggagttctcactccatctcatcttctccatagatgagcatgagtgctagttct 15731455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 417 - 514
Target Start/End: Original strand, 33078816 - 33078912
Alignment:
Q  417 ttagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctc 514  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||| | ||||| | | | | ||||||||||||||| || ||||||| ||| |||||    
T  33078816 ttagagtactcactccatctcatcttctccatagatgagcatgagtgttagtttttagtgaattagagttaggattactt-ggtgatgcttttagctc 33078912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 19708159 - 19708289
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    ||||||| ||||||  | || ||| |||||| ||||||||| || |||||  ||  |||||||||||||   || |||||||| | ||  ||||||| ||    
T  19708159 ttatcccacataatctatgaaaaactgagtgtatgcatgacatataacatataacgagtgactatttaggggttgatggttttgagtagcttttagtttt 19708258  T
Q  118 atttgatcattttgaactagtaatgcttgtt 148  Q
    || | ||||||||||||||||||||||||||    
T  19708259 atataatcattttgaactagtaatgcttgtt 19708289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 406 - 459
Target Start/End: Complemental strand, 26780548 - 26780495
Alignment:
Q  406 ggttagtagcattagagttctcactccatctcatcttctttatagatgagcatg 459  Q
    |||||||||| |||||||||||| |||||||||||||||  ||| |||||||||    
T  26780548 ggttagtagctttagagttctcattccatctcatcttctccataaatgagcatg 26780495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 477 - 580
Target Start/End: Original strand, 15731835 - 15731938
Alignment:
Q  477 atttagagttaggattatttaggtgatgatttaagctcacctccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttt 576  Q
    ||||||||||||||||| |||| || || || ||||||||||  ||||||  | ||||||| | |  |||||||| ||| |||||||||||||||  |||    
T  15731835 atttagagttaggattacttagatgttgcttcaagctcaccttattccttgtttgattgtaatttgttattaactctatattatctatcaatttaacttt 15731934  T
Q  577 tcat 580  Q
    ||||    
T  15731935 tcat 15731938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 162
Target Start/End: Complemental strand, 26780968 - 26780913
Alignment:
Q  107 tttttagtcttatttgatcattttgaactagtaatgcttgttttggatggttgatg 162  Q
    |||||||| ||| || |||||||||||||||||||||||||  |||||| ||||||    
T  26780968 tttttagtgttaattaatcattttgaactagtaatgcttgtcctggatgtttgatg 26780913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 321 - 363
Target Start/End: Original strand, 1972018 - 1972060
Alignment:
Q  321 ccttgaactataaaaggacaaccacatgttagtaccaagggtc 363  Q
    ||||| |||||||||||||||||||||||||||  ||||||||    
T  1972018 ccttgtactataaaaggacaaccacatgttagtgtcaagggtc 1972060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 406 - 455
Target Start/End: Original strand, 21501895 - 21501944
Alignment:
Q  406 ggttagtagcattagagttctcactccatctcatcttctttatagatgag 455  Q
    |||||| ||| ||||||||||||||||||||||| ||||  |||||||||    
T  21501895 ggttagaagctttagagttctcactccatctcatattctgaatagatgag 21501944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 362
Target Start/End: Original strand, 19709118 - 19709166
Alignment:
Q  314 tggttggccttgaactataaaaggacaaccacatgttagtaccaagggt 362  Q
    |||||| ||||| ||||||||| ||||||||||||||||| | ||||||    
T  19709118 tggttgaccttgtactataaaatgacaaccacatgttagtgctaagggt 19709166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 350
Target Start/End: Original strand, 33078713 - 33078749
Alignment:
Q  314 tggttggccttgaactataaaaggacaaccacatgtt 350  Q
    |||||||||||| |||| |||||||||||||||||||    
T  33078713 tggttggccttgtactaaaaaaggacaaccacatgtt 33078749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 1e-64; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 23 - 244
Target Start/End: Complemental strand, 7355510 - 7355289
Alignment:
Q  23 ccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttatttg 122  Q
    ||||| ||||||||||||||||||||||||||||  | ||| |||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  7355510 ccccacaatgaacgagaaattgagtgaatgcatggtccaaagcatctaatcagtgactatttataaatttatggttttaattaatttttagtgttatttg 7355411  T
Q  123 atcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagatctcgggcgcaacaaattggaattgaagttgca 222  Q
    |||||||||||||| ||||||||  |||||||| ||||||||||| | |||||||||||||| ||||||||||| || ||||  ||||||||||| ||||    
T  7355410 atcattttgaactaataatgcttagtttggatgtttgatggaacacgctgaagaatggcactagagatctcgggagctacaacgtggaattgaagatgca 7355311  T
Q  223 tatctgaagatataggaagatg 244  Q
    |   |||||||||| |||||||    
T  7355310 tgattgaagatatatgaagatg 7355289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 10178840 - 10179014
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    |||||||||| ||||||||| ||||||||||||||| ||||||||| |||  |||||||| | |||||| | ||||| ||||||||||||||||||| ||    
T  10178840 ttatcccccaaaatgaacgataaattgagtgaatgcgtgacctaaatcatttaatcagtgtccatttaggattttatagttttaattaatttttagtgtt 10178939  T
Q  118 atttgatcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagatct 192  Q
    |||| ||||||||||||||||||| ||||||||||||| ||||||||||| ||||| |||| |||||||||||||    
T  10178940 atttaatcattttgaactagtaatacttgttttggatgtttgatggaacatggtgatgaattgcactggagatct 10179014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 4224817 - 4224984
Alignment:
Q  25 ccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttatttgat 124  Q
    ||||||||||| ||||| ||||||||||||||||||||| |||  |||  ||||||||| || |||||||||||| ||||| |||||||| |  ||| ||    
T  4224817 ccataatgaacaagaaactgagtgaatgcatgacctaaagcatttaatttgtgactattaaggaatttatggtttcaattagtttttagtgtagttttat 4224916  T
Q  125 cattttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagatct 192  Q
    |||||||||| || |||||||| |||||||| |||||| |||||||| |||||| ||||| |||||||    
T  4224917 cattttgaacgagcaatgcttggtttggatgtttgatgaaacagggtaaagaattgcactagagatct 4224984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 19943619 - 19943447
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    ||||| ||||||||||||||| |||||||| |||||||||||||||||||  |||||||| |||||||| | ||||  ||||| |||| |||||| | ||    
T  19943619 ttatctcccataatgaacgaggaattgagtaaatgcatgacctaaaacatataatcagtgtctatttaggattttagagttttgattagtttttattgtt 19943520  T
Q  118 atttgatcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagat 190  Q
    |||| |||||||||||||||  || ||||||||||||| ||| ||||||| ||||| || | | |||||||||    
T  19943519 atttaatcattttgaactagccatacttgttttggatgtttgctggaacaaggtgaggattagaactggagat 19943447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 380 - 590
Target Start/End: Complemental strand, 12110164 - 12109953
Alignment:
Q  380 tgaattgagtggccaagt-ccaaccatggttagtagcattagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattat 478  Q
    |||||||||||| ||||| ||| | | |||||| |||| || || ||||||||||| |||||||||  ||||||| ||||||| | ||||||| | | ||    
T  12110164 tgaattgagtggacaagttccagctacggttagcagcactatagctctcactccatgtcatcttctccatagatgggcatgagtggtagttcttagtgat 12110065  T
Q  479 ttagagttaggattatttaggtgatgatttaagctcacctccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttc 578  Q
    |||||||||||||||||| ||| ||| || |||||||||| |||||||  || ||||||||||  |  || ||||||||||||||  ||||||| |||||    
T  12110064 ttagagttaggattatttgggttatgcttcaagctcacctacttccttattgaattgtattctcttgctagctatattttatctactaatttagcttttc 12109965  T
Q  579 atgttttcatct 590  Q
    ||||||||||||    
T  12109964 atgttttcatct 12109953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 418 - 565
Target Start/End: Original strand, 50688483 - 50688630
Alignment:
Q  418 tagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacc 517  Q
    |||||||||||||||||||||||||||  ||||||||||||||| ||| ||||| | | ||||||||||| ||||| || ||||||  || |||||||||    
T  50688483 tagagttctcactccatctcatcttctccatagatgagcatgagtgctcgttcttagtgatttagagttatgattactttggtgatacttcaagctcacc 50688582  T
Q  518 tccttcctttgtggattgtattcttctattaactatattttatctatc 565  Q
    || || |||  ||||||||| ||| | ||||||| |||||||||||||    
T  50688583 tctttacttcttggattgtaatctaccattaactctattttatctatc 50688630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 406 - 585
Target Start/End: Original strand, 10179277 - 10179455
Alignment:
Q  406 ggttagtagcattagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatga 505  Q
    |||||| |||| |||||||||||||||||||||||||||  ||||||||||||||| ||||||||| | | | ||||||||||||||| || | |||||     
T  10179277 ggttaggagcactagagttctcactccatctcatcttctccatagatgagcatgagtgctagttcttagtgaattagagttaggattactt-gatgatgc 10179375  T
Q  506 tttaagctcacctccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgtttt 585  Q
    ||  |||||||||  ||||||   |||||||| ||||  | || || ||||||||||||| |||||| |||| |||||||    
T  10179376 ttctagctcacctatttccttcaaggattgtaatcttgaactagctttattttatctatctatttagctttttatgtttt 10179455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 77 - 192
Target Start/End: Complemental strand, 37239496 - 37239382
Alignment:
Q  77 gactatttagaaatttatggttttaattaatttttagtcttatttgatcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaaga 176  Q
    ||||||||| |||||||||||||||| ||||||||| | |||||| |||||||||||||||||||| | ||||| |||| |||||||||||  |||| ||    
T  37239496 gactattta-aaatttatggttttaactaatttttaatgttatttaatcattttgaactagtaatgttagttttagatgtttgatggaacaatgtgagga 37239398  T
Q  177 atggcactggagatct 192  Q
    || | | |||||||||    
T  37239397 attgtaatggagatct 37239382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 314 - 515
Target Start/End: Original strand, 4225232 - 4225433
Alignment:
Q  314 tggttggccttgaactataaaaggacaaccacatgttagtaccaagggtcaaaaattgtacactcttgaattgagtggccaagtccaaccatggttagta 413  Q
    |||||| ||||| |||||| |||||||||||  || |||| | | |||||  ||| | ||||||  ||||||||| ||||||||||||| | |||||| |    
T  4225232 tggttgaccttgtactatataaggacaaccatgtggtagtgctaggggtccgaaactttacacttgtgaattgagcggccaagtccaactagggttagca 4225331  T
Q  414 gcattagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagct 513  Q
     || |||| |||||||| |||||||||||||   |||||||||||||| ||||  ||| | | | || |||||| |||||| ||||||||| || |||||    
T  4225332 acactagacttctcacttcatctcatcttctccgtagatgagcatgagtgctaactcttagtgacttggagttatgattatctaggtgatgtttcaagct 4225431  T
Q  514 ca 515  Q
    ||    
T  4225432 ca 4225433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 413 - 588
Target Start/End: Complemental strand, 7355070 - 7354895
Alignment:
Q  413 agcattagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagc 512  Q
    |||| |||||||||||||  ||||||| ||||  ||||||||||||||| | |||||||   | ||||| ||||||||||| ||| | |||| || ||||    
T  7355070 agcactagagttctcactttatctcattttctccatagatgagcatgagcgttagttcttggtgatttatagttaggattacttacgcgatgcttaaagc 7354971  T
Q  513 tcacctccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgttttcat 588  Q
    |||| || ||||||  |||||||||   |  |||||  | |||||||||||||||||||  |||||||||||||||    
T  7354970 tcacatctttccttcttggattgtaaaatgttattagttttattttatctatcaatttaacttttcatgttttcat 7354895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 418 - 504
Target Start/End: Original strand, 30500428 - 30500514
Alignment:
Q  418 tagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatg 504  Q
    |||||||||||||||||||||||||| | ||||||||||||||| ||||||||| | | | ||||| ||||||||| || |||||||    
T  30500428 tagagttctcactccatctcatcttcctcatagatgagcatgagtgctagttcttagtgaattagatttaggattactttggtgatg 30500514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 70 - 162
Target Start/End: Complemental strand, 22271224 - 22271132
Alignment:
Q  70 aatcagtgactattt-agaaatttatggttttaattaatttttagtcttatttgatcattttgaactagtaatgcttgttttggatggttgatg 162  Q
    ||||||||||||||| || | ||||| |||||| ||| |||||||| |||||| |||||||||||||| ||||| ||||| |||||| ||||||    
T  22271224 aatcagtgactattttaggattttatagttttagtta-tttttagtgttatttaatcattttgaactaataatgtttgttatggatgtttgatg 22271132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 143
Target Start/End: Original strand, 39327822 - 39327948
Alignment:
Q  17 attatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtct 116  Q
    |||||||||||| ||  | || ||||||||||| | ||||| ||| |||||  ||| | ||  |||||||||||||||| |||||| || |||||||  |    
T  39327822 attatcccccatgatctatgaaaaattgagtgattacatgatctataacatttaatgaatggttatttagaaatttatgattttaaatagtttttagggt 39327921  T
Q  117 tatttgatcattttgaactagtaatgc 143  Q
    ||||| ||| |||||||| ||||||||    
T  39327922 tatttaatctttttgaacaagtaatgc 39327948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 51461098 - 51461152
Alignment:
Q  107 tttttagtcttatttgatcattttgaactagtaatgcttgttttggatggttgat 161  Q
    |||||||| ||| || |||||||||||||| ||||||||||| |||||| |||||    
T  51461098 tttttagtgttaattaatcattttgaactattaatgcttgttgtggatgtttgat 51461152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 425 - 461
Target Start/End: Complemental strand, 19941053 - 19941017
Alignment:
Q  425 ctcactccatctcatcttctttatagatgagcatgag 461  Q
    ||||||||||||||||||||  |||||||||||||||    
T  19941053 ctcactccatctcatcttctccatagatgagcatgag 19941017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 111; Significance: 1e-55; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 327 - 585
Target Start/End: Complemental strand, 27467547 - 27467289
Alignment:
Q  327 actataaaaggacaaccacatgttagtaccaagggtcaaaaattgtacactcttgaattgagtggccaagtccaaccatggttagtagcattagagttct 426  Q
    ||||||||||||||||||| | ||||| ||||||||| |||||| ||| ||  |||||| || ||| ||||||| | |||||||  | ||||||||||||    
T  27467547 actataaaaggacaaccacgtcttagtgccaagggtccaaaattttacgcttatgaattaagaggcaaagtccagctatggttaacaacattagagttct 27467448  T
Q  427 cactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacctccttcctt 526  Q
    |||||| |||||||||||  ||| |||||||||||||  |||||| | | |||||||||||||||||||| ||||||| || |||||||||| ||||||     
T  27467447 cactccgtctcatcttctccataaatgagcatgagagtcagttcttagtgatttagagttaggattatttgggtgatgtttcaagctcaccttcttcctg 27467348  T
Q  527 tgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgtttt 585  Q
      ||||||| | | ||||||||||| |||||||||| ||||||||||||||||||||||    
T  27467347 cttggattgcaatattctattaactctattttatctttcaatttagtttttcatgtttt 27467289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 17558957 - 17558787
Alignment:
Q  22 cccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttattt 121  Q
    ||||||||| ||| |||||||||||| |||||||| ||||||||||| ||||||||||||||||  ||||||||||||||| || |||||||| ||| ||    
T  17558957 cccccataacgaatgagaaattgagttaatgcatggcctaaaacatctaatcagtgactatttatgaatttatggttttaagtagtttttagtgttaatt 17558858  T
Q  122 gatcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagatct 192  Q
     |||||||| |||||||||||| ||||||| ||| |||| |||||| ||||| |||| |||  ||||||||    
T  17558857 aatcattttaaactagtaatgcatgttttgaatgtttgaaggaacaaggtgaggaattgcagcggagatct 17558787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 27 - 180
Target Start/End: Complemental strand, 27467964 - 27467814
Alignment:
Q  27 ataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttatttgatca 126  Q
    |||||||||||||||||||||||||||||||||| ||||||    | | |   |||||||||||||||||||||||||   ||||||| |  ||||||||    
T  27467964 ataatgaacgagaaattgagtgaatgcatgaccttaaacatg---tgactatatatttagaaatttatggttttaattggcttttagtgtagtttgatca 27467868  T
Q  127 ttttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatgg 180  Q
     ||||||||| |||||||||||||||||| ||||||||||| ||||||||||||    
T  27467867 ctttgaactaataatgcttgttttggatgtttgatggaacaaggtgaagaatgg 27467814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 416 - 536
Target Start/End: Complemental strand, 17558508 - 17558388
Alignment:
Q  416 attagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctca 515  Q
    ||||||||||||||||  |||||||||||  ||||||||||||||| ||||||||| | | ||||  ||||||||||| |||||||||| || || ||||    
T  17558508 attagagttctcactctgtctcatcttctccatagatgagcatgagtgctagttcttagtgattttaagttaggattacttaggtgatgcttcaaactca 17558409  T
Q  516 cctccttcctttgtggattgt 536  Q
    |||| || |||  ||||||||    
T  17558408 cctcttttcttgttggattgt 17558388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 27 - 161
Target Start/End: Original strand, 25677489 - 25677623
Alignment:
Q  27 ataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttatttgatca 126  Q
    ||||||||| ||||||||||||| | ||| |||||| ||||| |||| ||| |||||||| | ||||| |||||||||| |||||||| ||| ||  |      
T  25677489 ataatgaacaagaaattgagtgatttcattacctaagacatctaatcggtgcctatttaggattttatagttttaattagtttttagtgttaattagttg 25677588  T
Q  127 ttttgaactagtaatgcttgttttggatggttgat 161  Q
    ||||||| |||||| ||||||| |||||| |||||    
T  25677589 ttttgaaatagtaaagcttgttgtggatgtttgat 25677623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 28 - 161
Target Start/End: Original strand, 24927866 - 24927999
Alignment:
Q  28 taatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttatttgatcat 127  Q
    ||||||||  |||||||||||| | ||| |||||| ||||| |||| ||| |||||||| | ||||| |||||||||| |||||||| ||| ||  |  |    
T  24927866 taatgaacaggaaattgagtgatttcattacctaagacatctaatcggtgcctatttaggattttatagttttaattagtttttagtgttaattagttgt 24927965  T
Q  128 tttgaactagtaatgcttgttttggatggttgat 161  Q
    |||||| |||||| ||||||| || ||| |||||    
T  24927966 tttgaaatagtaaagcttgttgtgaatgtttgat 24927999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 406 - 461
Target Start/End: Complemental strand, 25895428 - 25895373
Alignment:
Q  406 ggttagtagcattagagttctcactccatctcatcttctttatagatgagcatgag 461  Q
    |||||| ||| ||| ||||||||||||||||||||||||  |||||||||||||||    
T  25895428 ggttagcagctttatagttctcactccatctcatcttctccatagatgagcatgag 25895373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 418 - 588
Target Start/End: Complemental strand, 9790038 - 9789868
Alignment:
Q  418 tagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacc 517  Q
    ||||||||||||||||||| || ||||  ||||||||||||||| ||||||    | | ||||||||||| ||||| || ||||||  ||   |||||||    
T  9790038 tagagttctcactccatctaatattctccatagatgagcatgagtgctagtagatagtgatttagagttatgattactttggtgatacttgttgctcacc 9789939  T
Q  518 tccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgttttcat 588  Q
    || ||||||  |||  |||| | || |||||| |    ||||| |||||||||||||||||||||| ||||    
T  9789938 tctttccttgttgggctgtaatattttattaattcatctttatatatcaatttagtttttcatgttctcat 9789868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 404 - 467
Target Start/End: Original strand, 5369920 - 5369983
Alignment:
Q  404 atggttagtagcattagagttctcactccatctcatcttctttatagatgagcatgagagctag 467  Q
    |||||||| | | |||||||||||| | |||||||||||||  ||||||||||||||| |||||    
T  5369920 atggttagcaactttagagttctcatttcatctcatcttctccatagatgagcatgagtgctag 5369983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 460
Target Start/End: Original strand, 21822502 - 21822545
Alignment:
Q  417 ttagagttctcactccatctcatcttctttatagatgagcatga 460  Q
    |||||||||||| ||||||||||||| || ||||||||||||||    
T  21822502 ttagagttctcattccatctcatctttttcatagatgagcatga 21822545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Complemental strand, 33856506 - 33856447
Alignment:
Q  96 gttttaattaatttttagtcttatttgatcattttgaactagtaatgcttgttttggatg 155  Q
    ||||||||||||||||||| ||| |   ||||||||||||| ||||||||||| ||||||    
T  33856506 gttttaattaatttttagtgttaataagtcattttgaactattaatgcttgttgtggatg 33856447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 417 - 458
Target Start/End: Complemental strand, 33856056 - 33856015
Alignment:
Q  417 ttagagttctcactccatctcatcttctttatagatgagcat 458  Q
    ||||| ||||||||||||||||||||||  ||||||||||||    
T  33856056 ttagaattctcactccatctcatcttctccatagatgagcat 33856015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 6e-51; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 18 - 268
Target Start/End: Complemental strand, 2478714 - 2478465
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||| |     
T  2478714 ttatcccccataatgaacaagaaattaagtgaatgcatgacctaaaacatctaatcagtgactatttaggaatttatggttttaattagtttttagtgta 2478615  T
Q  118 atttgatcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagatctcgggcgcaacaaattggaattgaag 217  Q
     |||||||| |||||| ||||||||||| | |||||||  ||||| |||| || |||||||| |||| ||||||| ||   | |||| |||||||||||     
T  2478614 gtttgatca-tttgaaatagtaatgcttatcttggatgtatgatgaaacaaggcgaagaatgacactcgagatctaggcaactacaacttggaattgaaa 2478516  T
Q  218 ttgcatatctgaagatataggaagatgcagcatactagatcgtcatccggg 268  Q
     |||||    ||||||| |||||||||  ||||||||||||| || |||||    
T  2478515 atgcattgtggaagatacaggaagatgtggcatactagatcgccagccggg 2478465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 314 - 588
Target Start/End: Original strand, 984109 - 984383
Alignment:
Q  314 tggttggccttgaactataaaaggacaaccacatgttagtaccaagggtcaaaaattgtacactcttgaattgagtggccaagtccaaccatggtta-gt 412  Q
    |||||| ||||  |||||||||||||||||| ||| |||| | | ||||| |||||| || |||  |||||| || || |||||||| | | ||||| ||    
T  984109 tggttgaccttctactataaaaggacaaccatatggtagtgctaggggtccaaaattttagacttgtgaattaagcgggcaagtccagctaaggttaagt 984208  T
Q  413 agcattagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagc 512  Q
    ||||  |||||||||| |||||||||| ||||  |||||||||||| |||| || |||| | | ||||| |||||||||||||||||||||| || ||      
T  984209 agcaccagagttctcaatccatctcatattctacatagatgagcataagagttaattcttagtgatttaaagttaggattatttaggtgatgcttcaa-t 984307  T
Q  513 tcacctccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgttttcat 588  Q
    |||||   ||||||  ||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  984308 tcacccatttccttcttggattgtaatcttttatgaactatattttatctatcaatttagtttttcatgttttcat 984383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 418 - 585
Target Start/End: Complemental strand, 2476844 - 2476677
Alignment:
Q  418 tagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacc 517  Q
    |||||||||||||  ||||||||||||| ||||||||||||||| ||||||||| | | ||||||||| ||||||| || ||||||| || |||||||||    
T  2476844 tagagttctcacttaatctcatcttcttcatagatgagcatgagtgctagttcttagtgatttagagtcaggattacttgggtgatgcttcaagctcacc 2476745  T
Q  518 tccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgtttt 585  Q
    |  ||||||  | || |||| |||  || || |||||||||| |||| ||||||||||||||||||||    
T  2476744 tatttccttcttagactgtaatctgttactagctatattttagctattaatttagtttttcatgtttt 2476677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 12866270 - 12866110
Alignment:
Q  30 atgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttatttgatcattt 129  Q
    ||||||| |||||| |||| ||||||| | |||| ||||  ||||  || ||||||| | |||||||||||||||| |||||||| ||||||||||||||    
T  12866270 atgaacgggaaattaagtgtatgcatggcttaaaccatctcatcatagagtatttaggattttatggttttaattagtttttagtgttatttgatcattt 12866171  T
Q  130 tgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagat 190  Q
    ||||||||||||| || | ||||||| ||||||||| |  |||||||||| || |||||||    
T  12866170 tgaactagtaatgtttatgttggatgtttgatggaataaagtgaagaatgacattggagat 12866110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 70 - 289
Target Start/End: Complemental strand, 26573345 - 26573126
Alignment:
Q  70 aatcagtgactatttagaaatttatggttttaattaatttttagtcttatttgatcattttgaactagtaatgcttgttttggatggttgatggaacagg 169  Q
    |||||||||||||||||   |||||| ||||||||| |||||||| |  |||||||||||||||||||| |||||||||||||||| |||||  ||||||    
T  26573345 aatcagtgactatttagttttttatg-ttttaattattttttagtgtagtttgatcattttgaactagttatgcttgttttggatgtttgataaaacagg 26573247  T
Q  170 gtgaagaatggcactggagatctcgggcgcaacaaattggaattgaagttgcatatctgaagatataggaagatgcagcatactagatcgtcatccgggt 269  Q
    |||||||||| ||||| |||| |  |  || |||| ||||||| | || |||||   ||||||||||| || ||| ||||||| |||||  ||  || ||    
T  26573246 gtgaagaatgacactgaagatatgagaagccacaacttggaatcgtagatgcatcattgaagatatagaaaaatgtagcataccagatcaacagtcgagt 26573147  T
Q  270 cgtactatt-tacgaactcat 289  Q
    ||||||||| |||||||||||    
T  26573146 cgtactattgtacgaactcat 26573126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 38 - 179
Target Start/End: Original strand, 983705 - 983846
Alignment:
Q  38 gaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttatttgatcattttgaactag 137  Q
    |||||||||||||| || || ||||| |||| |||||||| |||||||| | |||||||||||||||| |||| ||| |  |||||||||||| ||||||    
T  983705 gaaattgagtgaatacacgatctaaagcatctaatcagtgtctatttaggattttatggttttaattagttttaagtgtagtttgatcattttaaactag 983804  T
Q  138 taatgcttgttttggatggttgatggaacagggtgaagaatg 179  Q
    | |||||||||||  ||| |||||||||||  ||||||||||    
T  983805 tgatgcttgttttttatgtttgatggaacaatgtgaagaatg 983846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 321 - 588
Target Start/End: Original strand, 16803412 - 16803676
Alignment:
Q  321 ccttgaactataaaaggacaaccacatgttagtaccaagggtcaaaaattgtacactcttgaattgagtggccaagt-ccaaccatggttagtagcatta 419  Q
    ||||| ||||| ||||||||||||||||||||| |||||||||  ||||| |    |  ||| ||||| |||||||| ||||| | |||||| ||| |||    
T  16803412 ccttgtactatgaaaggacaaccacatgttagtgccaagggtccgaaattttga--ttgtgatttgagaggccaagttccaactagggttagcagcttta 16803509  T
Q  420 gagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacctc 519  Q
    ||||||||||| |||||||||||||  ||||||||||||||| | ||||| | | ||| ||| ||||||||||| || ||||||| ||| ||||||||      
T  16803510 gagttctcactacatctcatcttctccatagatgagcatgagggatagtttttagttaattatagttaggattactt-ggtgatgcttttagctcaccaa 16803608  T
Q  520 cttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgttttcat 588  Q
     ||| ||   |||||||| |||  ||| | || || ||||||||||||||||| |||||||||||||||    
T  16803609 tttcattcaaggattgtaatctcgtatcatctcta-tttatctatcaatttagcttttcatgttttcat 16803676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 320 - 588
Target Start/End: Complemental strand, 26572971 - 26572699
Alignment:
Q  320 gccttgaactataaaaggacaaccacatgttagtaccaa-gggtcaaaaattgtacactcttgaattgagtggccaagtccaaccatggttagtagcatt 418  Q
    |||||| |||||||||||| || ||||||||||| |||| |||||   |||| ||||||  ||||||||| |||||| || | | | |||||| || | |    
T  26572971 gccttgtactataaaaggaaaatcacatgttagtgccaatgggtcctgaattttacacttgtgaattgagaggccaattctagctagggttagcagtact 26572872  T
Q  419 agagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacct 518  Q
    |||||||| |||  ||||||||||||  ||||||||||||||| | ||||||| | | ||||||||||| |||||||| ||||||| || ||||||||||    
T  26572871 agagttctgactt-atctcatcttctccatagatgagcatgagtgttagttcttagtgatttagagttaagattatttgggtgatgcttcaagctcacct 26572773  T
Q  519 ccttcctttgtggattgtattcttctattaactatatttta----tctatcaatttagtttttcatgttttcat 588  Q
    | | ||||  ||||||| | | |  || ||||| |||||||    | ||||||||||| |||||||||||||||    
T  26572772 cttcccttcttggattgcaatatgttactaactctattttatatctatatcaatttagcttttcatgttttcat 26572699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 1781506 - 1781357
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    ||||||||||||||  |  ||||||| ||||| || ||| |||| |||||| |||||||||| |||||  ||||||||||||||| || |||||||| ||    
T  1781506 ttatcccccataatcgataagaaattaagtgattgaatggcctataacatctaatcagtgaccatttattaatttatggttttaagtagtttttagtgtt 1781407  T
Q  118 atttgatcattttgaactagtaatgcttgttttggatggttgatggaaca 167  Q
     ||| ||||||||||||||||| ||||| || |||||| || ||||||||    
T  1781406 ctttaatcattttgaactagtattgcttattatggatgttttatggaaca 1781357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 23103102 - 23103239
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    |||||||||||||| ||| ||||| ||||||||||||    ||||| |||| ||| |||| |||||||| | ||||| |||||||||| |||||||| ||    
T  23103102 ttatcccccataattaacaagaaaatgagtgaatgcaatgtctaaagcatctaattagtgcctatttaggattttatagttttaattagtttttagtgtt 23103201  T
Q  118 atttgatcattttgaactagtaatgcttgttttggatg 155  Q
    | ||  ||||||||||||||||||||||||| ||||||    
T  23103202 aattattcattttgaactagtaatgcttgttgtggatg 23103239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 327 - 527
Target Start/End: Complemental strand, 12865932 - 12865731
Alignment:
Q  327 actataaaaggacaaccacatgttagtaccaagggtcaa-aaattgtacactcttgaattgagtggccaagtccaaccatggttagtagcattagagttc 425  Q
    ||||||||||||||||||||||||||| ||||||||| | ||||| || ||   | ||||||| ||||||||| | |     |||| | || || |||||    
T  12865932 actataaaaggacaaccacatgttagtgccaagggtctagaaattttatacatgtaaattgagcggccaagtctagctggcattagcaacactaaagttc 12865833  T
Q  426 tcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacctccttcct 525  Q
    |||  | ||||||||||||  ||||||||||||||| | ||||||||| | |||| ||||||||||||||| ||||||| || ||||||||||  |||||    
T  12865832 tcatactatctcatcttctccatagatgagcatgagtggtagttctcattgatttcgagttaggattatttgggtgatgcttcaagctcacctatttcct 12865733  T
Q  526 tt 527  Q
    ||    
T  12865732 tt 12865731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 8859648 - 8859476
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    |||| |||||||||  | |||||||||||| | |||||||| || | |||| |||||| ||||| |||| ||||||| ||||||| || |||||||| ||    
T  8859648 ttattccccataatatatgagaaattgagttattgcatgacatatagcatctaatcagagactacttaggaatttattgttttaagtagtttttagtgtt 8859549  T
Q  118 atttgatcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagat 190  Q
    |||| ||| |||| ||||||||||| ||||| |||||| ||   |||||||| ||| |||| ||||| |||||    
T  8859548 atttaatcgttttcaactagtaatgtttgttatggatgttttgcggaacaggatgaggaattgcacttgagat 8859476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 319 - 590
Target Start/End: Complemental strand, 29542395 - 29542125
Alignment:
Q  319 ggccttgaactataaaaggacaaccacatgttagtaccaagggtcaaaaattgtacactcttgaattgagtggccaagt-ccaaccatggttagtagcat 417  Q
    ||||||| | ||||||||| ||||||||||||||| |||| |||   ||||| |||| |  |||||| |  |||||||| ||| | |  |||||| |||     
T  29542395 ggccttgtaatataaaagggcaaccacatgttagtgccaaaggttcgaaattttaca-tggtgaatttaaaggccaagttccagctagagttagttgcac 29542297  T
Q  418 tagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacc 517  Q
    ||||||||||||| |||||||||||||  ||| ||||||||||| |||| |||| | | | ||||||||| ||| | || ||||||| ||| ||||| ||    
T  29542296 tagagttctcacttcatctcatcttctccatatatgagcatgagtgctatttctgattgaattagagttaagataactt-ggtgatgcttttagctcgcc 29542198  T
Q  518 tccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgttttcatct 590  Q
    ||  ||||    |||||||| | |  || || || ||||||||||||||||||| ||||||||||||||||||    
T  29542197 tctctcctccaaggattgtaatatcgtactagctctattttatctatcaatttaatttttcatgttttcatct 29542125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 8858845 - 8858982
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    ||||||||| ||||  | |||||||||||| | |||||||| || | |||| |||||| |||||||||  ||||||| ||||||| || |||||||| ||    
T  8858845 ttatcccccgtaatctatgagaaattgagttattgcatgacatatagcatctaatcagagactatttatgaatttattgttttaagtagtttttagtgtt 8858944  T
Q  118 atttgatcattttgaactagtaatgcttgttttggatg 155  Q
    |||| |||||||||||  | ||||| ||||| ||||||    
T  8858945 atttaatcattttgaatcaataatgtttgttatggatg 8858982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 423 - 518
Target Start/End: Original strand, 8876424 - 8876519
Alignment:
Q  423 ttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacct 518  Q
    ||||||||||||||||||||  | | ||||||||||||| ||||||||| | | |||||| ||||  |||| |||||||||| |||||||||||||    
T  8876424 ttctcactccatctcatctttctcacagatgagcatgagtgctagttcttagtaatttagggttataattacttaggtgatgctttaagctcacct 8876519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 8875869 - 8876005
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    |||| |||||||||  | |||||||||||| | |||||||| || | |||| |||||  ||||| |||| ||||||| ||||||| || |||| ||| ||    
T  8875869 ttattccccataatatatgagaaattgagttattgcatgacttatagcatctaatcatagactacttaggaatttattgttttaagtagtttt-agtgtt 8875967  T
Q  118 atttgatcattttgaactagtaatgcttgttttggatg 155  Q
    |||| ||| |||||||||||||||| ||||| ||||||    
T  8875968 atttaatcgttttgaactagtaatgtttgttatggatg 8876005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 16803091 - 16803236
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    |||||| ||||||||||||| |||||||||||||||| | |||||   ||| |||  || || |||||| || || | |||||||||| |||||||| ||    
T  16803091 ttatcctccataatgaacgataaattgagtgaatgcaaggcctaaggaatctaatgggttac-atttaggaacttgtagttttaattagtttttagtgtt 16803189  T
Q  118 atttgatcattttgaactagtaatgcttgttttggatggttgatggaaca 167  Q
    |||| || |||||||||   ||||||||||| |||||| |||||| ||||    
T  16803190 atttaataattttgaac---taatgcttgttgtggatgtttgatgaaaca 16803236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 7228075 - 7228197
Alignment:
Q  27 ataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaa-atttatggttttaattaatttttagtcttatttgatc 125  Q
    ||||||||| ||||||||||||| || ||  ||||| | ||| |||||||| ||||||||||  ||||| ||||||| || | |||||| ||| || |||    
T  7228075 ataatgaacaagaaattgagtgattgaattgcctaagagatctaatcagtgcctatttagaatttttatagttttaagtagtgtttagtgttaattaatc 7228174  T
Q  126 attttgaactagtaatgcttgtt 148  Q
     |||||||||||||||| |||||    
T  7228175 tttttgaactagtaatgattgtt 7228197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 29 - 162
Target Start/End: Complemental strand, 25992497 - 25992364
Alignment:
Q  29 aatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactattt-agaaatttatggttttaattaatttttagtcttatttgatcat 127  Q
    ||||||||||||||| ||||| |||||  ||||| ||||| |||  |||||||||| || |  |||| |||||| ||  |||||||| |||||| |||||    
T  25992497 aatgaacgagaaatttagtgattgcattgcctaagacatctaattggtgactattttaggatgttatagttttagttg-tttttagtgttatttaatcat 25992399  T
Q  128 tttgaactagtaatgcttgttttggatggttgatg 162  Q
    |||||| |||||||||||||  |||||| ||||||    
T  25992398 tttgaattagtaatgcttgtcatggatgtttgatg 25992364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 316 - 368
Target Start/End: Original strand, 7228498 - 7228550
Alignment:
Q  316 gttggccttgaactataaaaggacaaccacatgttagtaccaagggtcaaaaa 368  Q
    |||||||||| |||||||||||||||| |  ||||||||||||||||| ||||    
T  7228498 gttggccttgtactataaaaggacaacaatgtgttagtaccaagggtccaaaa 7228550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 19856959 - 19856880
Alignment:
Q  81 atttagaaatttatggttttaattaatttttagtcttatttgatcattttgaactagtaatgcttgttttggatggttga 160  Q
    |||||| | ||||| ||||||| |  |||||||| ||| || |||||||||||||||| ||||||||| |||||| ||||    
T  19856959 atttaggattttatagttttaagttgtttttagtgttaattaatcattttgaactagtgatgcttgttgtggatgtttga 19856880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 530 - 588
Target Start/End: Complemental strand, 5057159 - 5057101
Alignment:
Q  530 ggattgtattcttctattaactatattttatctatcaatttagtttttcatgttttcat 588  Q
    |||||||| |||| |  ||||||||||| ||||||||||||||||||  ||||||||||    
T  5057159 ggattgtaatcttgtcctaactatatttaatctatcaatttagttttctatgttttcat 5057101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 26573386 - 26573348
Alignment:
Q  17 attatcccccataatgaacgagaaattgagtgaatgcat 55  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  26573386 attatcctccaaaatgaacgagaaattgagtgaatgcat 26573348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 192
Target Start/End: Original strand, 17468391 - 17468564
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    |||||||||||||||||  ||||||||||||||||| || | |||| |||| ||||||||||||||||| ||||||  ||||||||| ||||||||| |     
T  17468391 ttatcccccataatgaataagaaattgagtgaatgcgtggcataaagcatctaatcagtgactatttaggaatttacagttttaatt-atttttagtgta 17468489  T
Q  118 atttgatcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagatct 192  Q
     ||| ||||||||||||||| ||||||||||||||||| || ||||||| | ||||||||||  ||| |||||||    
T  17468490 gtttaatcattttgaactagcaatgcttgttttggatgtttaatggaactgagtgaagaatgatactagagatct 17468564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 406 - 588
Target Start/End: Original strand, 17468840 - 17469021
Alignment:
Q  406 ggttagtagcattagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatga 505  Q
    ||||||||||| |||||||||| ||||||| | ||||||  |||||||  |||| | |||| |||| | | ||||| |||||| ||||||| ||| ||      
T  17468840 ggttagtagcactagagttctcgctccatcccttcttctccatagatggtcatgggtgcta-ttcttagtgatttaaagttagtattattttggttattc 17468938  T
Q  506 tttaagctcacctccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgttttcat 588  Q
    || ||||||||||  ||||||  ||||||||| |||  || || || |||||||| ||| |||||||||||||||||||||||    
T  17468939 ttcaagctcacctatttccttcttggattgtaatctattactagctctattttatatattaatttagtttttcatgttttcat 17469021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 418 - 588
Target Start/End: Original strand, 23361421 - 23361590
Alignment:
Q  418 tagagttctcactccatctcatcttctttatagatgagcatgagagcta-gttctcaattatttagagttaggattatttaggtgatgatttaagctcac 516  Q
    |||||||||||||||||||||| ||||  ||||||||||||||| ||||  || | | | | |||||||| ||||||  | ||||||| ||| |||||||    
T  23361421 tagagttctcactccatctcattttctccatagatgagcatgagggctatttttttagtgaattagagtttggattacgt-ggtgatgttttcagctcac 23361519  T
Q  517 ctccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgttttcat 588  Q
    | |  |||||   |||||||| |||| || || |||||||| |||||||||||||| |||||||||||||||    
T  23361520 cactctccttcaaggattgtaatcttgtactagctatatttcatctatcaatttag-ttttcatgttttcat 23361590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 36 - 150
Target Start/End: Complemental strand, 15608386 - 15608272
Alignment:
Q  36 gagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttatttgatcattttgaact 135  Q
    |||||||||||||| |||||||| |  | |||| ||| | ||||||||||| |||||||| |||||| ||  ||||||| |||||| ||| ||||||| |    
T  15608386 gagaaattgagtgattgcatgacatgtagcatctaataattgactatttaggaatttatgattttaaatagcttttagtgttatttaatctttttgaagt 15608287  T
Q  136 agtaatgcttgtttt 150  Q
    ||||||||| |||||    
T  15608286 agtaatgctcgtttt 15608272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 26 - 77
Target Start/End: Original strand, 23360907 - 23360958
Alignment:
Q  26 cataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtg 77  Q
    ||||||||||||||||||||||||||||| ||||||||| ||| ||| ||||    
T  23360907 cataatgaacgagaaattgagtgaatgcacgacctaaaatatctaattagtg 23360958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 43582629 - 43582553
Alignment:
Q  116 ttatttgatcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagatct 192  Q
    |||||| ||||||||||||||||||||| |||| |||||| |||||| |||| | ||| |  | |||||||||||||    
T  43582629 ttatttaatcattttgaactagtaatgcgtgttgtggatgcttgatgaaacatgatgaggtttagcactggagatct 43582553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 27 - 162
Target Start/End: Original strand, 27892825 - 27892959
Alignment:
Q  27 ataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttatttgatca 126  Q
    |||||| || ||||||||| |||  ||||  ||||| | ||| ||| |||| |||||||| | ||||| | ||||| |  |||||||| |||||  ||||    
T  27892825 ataatggacaagaaattgattgatcgcattgcctaagatatctaataagtgtctatttagtattttatagatttaagttgtttttagtgttatta-atca 27892923  T
Q  127 ttttgaactagtaatgcttgttttggatggttgatg 162  Q
    |||||||||||||||||||||| || ||| ||||||    
T  27892924 ttttgaactagtaatgcttgttgtgtatgtttgatg 27892959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 126
Target Start/End: Original strand, 16510576 - 16510678
Alignment:
Q  24 cccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttatttga 123  Q
    ||||||||||| ||||||||||| |||||||||   |||| |||  |||||||| |||||||    |||||  ||||||||| |||||||| |||||| |    
T  16510576 cccataatgaatgagaaattgagcgaatgcatgcgttaaagcatataatcagtgcctatttaagtttttataattttaattagtttttagtgttatttaa 16510675  T
Q  124 tca 126  Q
    |||    
T  16510676 tca 16510678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 556 - 588
Target Start/End: Original strand, 16511191 - 16511223
Alignment:
Q  556 tttatctatcaatttagtttttcatgttttcat 588  Q
    ||||||||||||||||| |||||||||||||||    
T  16511191 tttatctatcaatttagcttttcatgttttcat 16511223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 78; Significance: 5e-36; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 30123035 - 30122866
Alignment:
Q  23 ccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttatttg 122  Q
    |||||||||||| |||||||| ||| |||| ||| ||||||||||| ||| ||||  ||||||| | ||||| |||||||||| |||||||| |||| ||    
T  30123035 ccccataatgaatgagaaattaagtaaatgtatggcctaaaacatctaattagtgcatatttaggattttatagttttaattagtttttagtgttatgtg 30122936  T
Q  123 atcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagatct 192  Q
     ||||||||||||||||||  |||||||||||| ||||||||||| || ||||||||| | |||||||||    
T  30122935 gtcattttgaactagtaatttttgttttggatgtttgatggaacatggagaagaatggaattggagatct 30122866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 418 - 588
Target Start/End: Complemental strand, 19452711 - 19452541
Alignment:
Q  418 tagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacc 517  Q
    ||||||| |||||||||| |||||||   | ||||||||||||| || |||||| | | ||||||||||||||||| ||  |||||| || |||||||||    
T  19452711 tagagttatcactccatcccatcttcgccagagatgagcatgagtgcgagttcttagtgatttagagttaggattacttgagtgatgcttcaagctcacc 19452612  T
Q  518 tccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgttttcat 588  Q
    || ||||||  ||||||| | |||| |||||||||||||||||||||| |||| | |||||||||||||||    
T  19452611 tcattccttgttggattgcaatcttttattaactatattttatctatcgattttgattttcatgttttcat 19452541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 418 - 588
Target Start/End: Original strand, 19528365 - 19528535
Alignment:
Q  418 tagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacc 517  Q
    ||||||| |||||||||| |||||||   | ||||||||||||| || |||||| | | ||||||||||||||||| ||  |||||| || |||||||||    
T  19528365 tagagttatcactccatcccatcttcgccagagatgagcatgagtgcgagttcttagtgatttagagttaggattacttgagtgatgcttcaagctcacc 19528464  T
Q  518 tccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgttttcat 588  Q
    || ||||||  ||||||| | |||| |||||||||||||||||||||| |||| | |||||||||||||||    
T  19528465 tcattccttgttggattgcaatcttttattaactatattttatctatcgattttgattttcatgttttcat 19528535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 18 - 132
Target Start/End: Original strand, 7634632 - 7634746
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    ||||||||||||||  |  ||||||||||||| |||||| |||||| | || ||| ||||| ||||||| ||||||||||||||| || |||||||| ||    
T  7634632 ttatcccccataatctataagaaattgagtgattgcatggcctaaaccttctaattagtgattatttaggaatttatggttttaagtagtttttagtatt 7634731  T
Q  118 atttgatcattttga 132  Q
    |||| ||||||||||    
T  7634732 atttaatcattttga 7634746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 454 - 588
Target Start/End: Complemental strand, 30122520 - 30122385
Alignment:
Q  454 agcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaa-gctcacctccttcctttgtggattgtattcttctattaacta 552  Q
    ||||||||| |||||||| ||  |||||||||||||||||||  ||||||  |  || ||||| ||||||||||  ||||||||| |||| | ||||||     
T  30122520 agcatgagatctagttcttaaggatttagagttaggattattcgggtgatactccaaagctcatctccttccttattggattgtaatcttatgttaactt 30122421  T
Q  553 tattttatctatcaatttagtttttcatgttttcat 588  Q
    |||||||| | |||| ||||||||||||||||||||    
T  30122420 tattttatatttcaaattagtttttcatgttttcat 30122385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 447 - 588
Target Start/End: Complemental strand, 13218019 - 13217878
Alignment:
Q  447 atagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacctccttcctttgtggattgtattcttctat 546  Q
    ||||||||||||| | ||||| ||  | | ||||||||||||||||| ||| |||||| || || |||||||| | ||||  | ||||| | | |  |||    
T  13218019 atagatgagcatgtgtgctagctcctagtgatttagagttaggattacttaagtgatgcttcaatctcacctcttcccttgttagattgcaatttgttat 13217920  T
Q  547 taactatattttatctatcaatttagtttttcatgttttcat 588  Q
    ||||| ||||||||| ||||||||||||||||||||||||||    
T  13217919 taactctattttatccatcaatttagtttttcatgttttcat 13217878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 314 - 410
Target Start/End: Complemental strand, 30122620 - 30122524
Alignment:
Q  314 tggttggccttgaactataaaaggacaaccacatgttagtaccaagggtcaaaaattgtacactcttgaattgagtggccaagtccaaccatggtta 410  Q
    |||||||||||| |||||||||||| |||||||| ||||||||||||||| ||  || |||| |  |||||| || ||||||||||| | |||||||    
T  30122620 tggttggccttgtactataaaaggaaaaccacattttagtaccaagggtccaatcttttacatttgtgaattaagcggccaagtccagctatggtta 30122524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 318 - 364
Target Start/End: Original strand, 7635064 - 7635110
Alignment:
Q  318 tggccttgaactataaaaggacaaccacatgttagtaccaagggtca 364  Q
    |||||||| ||||||||||||||||||||||| ||| ||||||||||    
T  7635064 tggccttgtactataaaaggacaaccacatgtgagtgccaagggtca 7635110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 109 - 162
Target Start/End: Original strand, 22541133 - 22541186
Alignment:
Q  109 tttagtcttatttgatcattttgaactagtaatgcttgttttggatggttgatg 162  Q
    |||||| ||| || |||||||||||||||||||||||||| |||||| ||||||    
T  22541133 tttagttttaattaatcattttgaactagtaatgcttgttgtggatgtttgatg 22541186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 314 - 363
Target Start/End: Original strand, 25233536 - 25233585
Alignment:
Q  314 tggttggccttgaactataaaaggacaaccacatgttagtaccaagggtc 363  Q
    |||||||||||| ||||||||||||||||||  ||||||| |||||||||    
T  25233536 tggttggccttgtactataaaaggacaaccatgtgttagtgccaagggtc 25233585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 498 - 585
Target Start/End: Complemental strand, 37379110 - 37379023
Alignment:
Q  498 ggtgatgatttaagctcacctccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgtttt 585  Q
    ||||||| ||| |||||||| | ||||||   |||||||| |||| || || || ||||| |||||||||||||||||| ||||||||    
T  37379110 ggtgatgcttttagctcaccactttccttcaaggattgtaatcttgtactagctctatttaatctatcaatttagttttccatgtttt 37379023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 363
Target Start/End: Complemental strand, 13218150 - 13218105
Alignment:
Q  318 tggccttgaactataaaaggacaaccacatgttagtaccaagggtc 363  Q
    |||||||| |||| |||||||||||||||| ||||| |||||||||    
T  13218150 tggccttgtactacaaaaggacaaccacattttagtgccaagggtc 13218105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 29452909 - 29452986
Alignment:
Q  37 agaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagt 114  Q
    ||||||||||| | ||||||  |||  ||||  ||| |||||||||||| ||||||||| ||||||||| ||||||||    
T  29452909 agaaattgagtaattgcatggtctatgacatataattagtgactatttaaaaatttatgattttaattagtttttagt 29452986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 861907 - 862077
Alignment:
Q  18 ttatcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtctt 117  Q
    ||||| |||||||||||||||||||||| |||||||||| |||||| |||| || || || ||||| |  | |||||||||| ||||| ||||| || ||    
T  861907 ttatctcccataatgaacgagaaattgaatgaatgcatggcctaaagcatctaaacaatgtctattcaagattttatggttt-aattagttttt-gtgtt 862004  T
Q  118 atttgatcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagat 190  Q
    |||||| |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| || |||||||    
T  862005 atttgaccattttgaactagtaatgcttgttttagatgtttgatggaacaaggtgaagaatgacattggagat 862077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 314 - 487
Target Start/End: Original strand, 862324 - 862497
Alignment:
Q  314 tggttggccttgaactataaaaggacaaccacatgttagtaccaagggtcaaaaattgtacactcttgaattgagtggccaagtccaaccatggttagta 413  Q
    |||||| ||||| || | |||||||||||||||  ||||| |||| ||||  ||||| ||||||  ||||||||||||  ||||||| | | |||||| |    
T  862324 tggttgaccttgtaccacaaaaggacaaccacacattagtgccaaaggtccgaaattttacacttgtgaattgagtggggaagtccagctagggttagca 862423  T
Q  414 gcattagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagtta 487  Q
     || ||||||| |||||||||||||||||||| ||||||||||||||| |  |||||| | | |||||||||||    
T  862424 tcactagagttttcactccatctcatcttcttcatagatgagcatgagtgtcagttcttagtgatttagagtta 862497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 29 - 192
Target Start/End: Complemental strand, 48559491 - 48559328
Alignment:
Q  29 aatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttatttgatcatt 128  Q
    ||||||| | ||| |||||||||| ||||||||||||||| ||| |||| |||||||  | ||||  |||||||||| |||||||  |  ||| ||||||    
T  48559491 aatgaacaaaaaactgagtgaatgtatgacctaaaacatctaattagtgcctatttaagattttagagttttaattagtttttagagtagtttaatcatt 48559392  T
Q  129 ttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagatct 192  Q
    ||||||||| |   ||||||||||||| |||||| ||||  | |||||||| || |||||||||    
T  48559391 ttgaactagcacaacttgttttggatgtttgatgaaacaaagggaagaatgacattggagatct 48559328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 27902675 - 27902788
Alignment:
Q  18 ttatccccc-ataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttat-ggttttaattaatttttagtc 115  Q
    ||||||||| ||||||||| ||||||||| |||||||||||||||||   || |||||||| |||||| ||| ||||| ||||||  ||| ||||||||     
T  27902675 ttatccccctataatgaacaagaaattgattgaatgcatgacctaaagtgtctaatcagtgtctattttgaattttatgggtttttgttagtttttagtg 27902774  T
Q  116 ttatttgatcattt 129  Q
    ||||||||||||||    
T  27902775 ttatttgatcattt 27902788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 415 - 588
Target Start/End: Complemental strand, 48559280 - 48559107
Alignment:
Q  415 cattagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctc 514  Q
    |||||||||||||| |  ||||||| || |  |||||| |||||||| ||||||| ||||  ||||||||||| |||||||| | ||||| || ||||||    
T  48559280 cattagagttctcaattaatctcatattttccatagataagcatgagtgctagttttcaacgatttagagttaagattatttggatgatgcttcaagctc 48559181  T
Q  515 acctccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgttttcat 588  Q
    || || ||| ||  |  |||||| | |  || |  || |||||||||||||||||||  |||||||||||||||    
T  48559180 acatctttcattcttaaattgtaatatgttagtggctctattttatctatcaatttaacttttcatgttttcat 48559107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 417 - 453
Target Start/End: Complemental strand, 4287925 - 4287889
Alignment:
Q  417 ttagagttctcactccatctcatcttctttatagatg 453  Q
    |||||||||||||||||||||||||||| ||||||||    
T  4287925 ttagagttctcactccatctcatcttctatatagatg 4287889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 502
Target Start/End: Complemental strand, 32090710 - 32090626
Alignment:
Q  418 tagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtga 502  Q
    |||||||||||||| ||||||||| ||  || ||||||||| || |||||||||   | | ||||||||||||||| ||||||||    
T  32090710 tagagttctcactcaatctcatctcctccatcgatgagcataagtgctagttctttttgagttagagttaggattacttaggtga 32090626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 421 - 471
Target Start/End: Complemental strand, 7720922 - 7720872
Alignment:
Q  421 agttctcactccatctcatcttctttatagatgagcatgagagctagttct 471  Q
    |||| ||||||||||||||||| || |||||| |||||||| |||||||||    
T  7720922 agttttcactccatctcatctttttcatagattagcatgagtgctagttct 7720872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 4288278 - 4288230
Alignment:
Q  107 tttttagtcttatttgatcattttgaactagtaatgcttgttttggatg 155  Q
    |||||||| ||| || |||||||||||||||||||| ||||| ||||||    
T  4288278 tttttagtgttaattaatcattttgaactagtaatgtttgttatggatg 4288230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 314 - 588
Target Start/End: Original strand, 14274596 - 14274871
Alignment:
Q  314 tggttggccttgaactataaaaggacaaccacatgttagtaccaagggtcaaaaattgtacactcttgaattgagtggccaagtccaaccatggtta-gt 412  Q
    |||||| ||||| | ||||||||||||||||| || ||| || | |||||  |||||  ||| |  |||||| || ||||||||| | | | ||||| |     
T  14274596 tggttgaccttgtattataaaaggacaaccacgtggtagcactaggggtccgaaatttgacatttgtgaattaagcggccaagtcaagctagggttaaga 14274695  T
Q  413 agcattagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagc 512  Q
    |||| |||||||||||||||||||||| ||||  ||||||||  ||||||||||||||| ||| ||||| ||||| ||||||||| |||||| || ||||    
T  14274696 agcactagagttctcactccatctcattttctccatagatgaagatgagagctagttcttaatgatttatagttaagattatttaagtgatgcttcaagc 14274795  T
Q  513 tcacctccttcctttgtggattgtattcttctattaactatattttatctatcaatttagtttttcatgttttcat 588  Q
    ||||||| ||  |    ||||| || | ||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  14274796 tcacctcatttttgctaggattataatattctagtaactctattttatctatcaatttagttttccatgttttcat 14274871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 21 - 252
Target Start/End: Original strand, 14274183 - 14274414
Alignment:
Q  21 tcccccataatgaacgagaaattgagtgaatgcatgacctaaaacatccaatcagtgactatttagaaatttatggttttaattaatttttagtcttatt 120  Q
    |||| |||| |||| ||||||| || |||||||||| | |||| || | ||| | ||||||||||  | |||||| ||||||||| |||||||| |  ||    
T  14274183 tcccacatattgaatgagaaat-gattgaatgcatggcataaagcagctaattaatgactatttaagattttatgattttaattagtttttagtgtagtt 14274281  T
Q  121 tgatcattttgaactagtaatgcttgt-tttggatggttgatggaacagggtgaagaatggcactggagatctcgggcgcaacaaattggaattgaagtt 219  Q
    | |||||||||||||| |||||||||| |||| ||| |||||| ||||||||||| |||  |||| ||||||||||| || | || ||  |||||||| |    
T  14274282 taatcattttgaactaataatgcttgtgtttgaatgtttgatgaaacagggtgaacaataacactagagatctcgggagctaaaacttcaaattgaagat 14274381  T
Q  220 gcatatctgaagatataggaagatgcagcatac 252  Q
    ||||  || |||| ||| ||||||| |||||||    
T  14274382 gcattgctaaagagataagaagatgtagcatac 14274414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 90 - 162
Target Start/End: Original strand, 107643 - 107715
Alignment:
Q  90 tttatggttttaattaatttttagtcttatttgatcattttgaactagtaatgcttgttttggatggttgatg 162  Q
    ||||| |||||||||| |||||||| ||| || |||| ||||||||||||||||||||| |||| | ||||||    
T  107643 tttatagttttaattagtttttagtgttaattaatcaatttgaactagtaatgcttgttgtggaagtttgatg 107715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 124 - 191
Target Start/End: Original strand, 119144 - 119211
Alignment:
Q  124 tcattttgaactagtaatgcttgttttggatggttgatggaacagggtgaagaatggcactggagatc 191  Q
    |||||||||||||||||| || ||||||| || || |||||||| | |||||| |||| |||||||||    
T  119144 tcattttgaactagtaattctcgttttggttgttttatggaacatgatgaagattggctctggagatc 119211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 532
Target Start/End: Original strand, 119573 - 119686
Alignment:
Q  418 tagagttctcactccatctcatcttctttatagatgagcatgagagctagttctcaattatttagagttaggattatttaggtgatgatttaagctcacc 517  Q
    |||||||||||||||||||||||||| | ||| |||||||| |  ||||||||| | | | ||||||||  ||||| ||  ||||||  ||||||||| |    
T  119573 tagagttctcactccatctcatcttcctcataaatgagcattaatgctagttcttagtgaattagagttcagattaattttgtgatg-cttaagctcaac 119671  T
Q  518 tccttcctttgtgga 532  Q
    || ||| ||||||||    
T  119672 tctttcttttgtgga 119686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University