View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_high_46 (Length: 227)
Name: NF19829_high_46
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_high_46 |
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Alignment Details
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 99 - 226
Target Start/End: Complemental strand, 18293987 - 18293860
Alignment:
| Q |
99 |
atgagtgaacaatgcctgtagaacaggtttaaccttctcttcaccattctgattactattttctaacaccagacttgcaattgcagcaccaactaggtcg |
198 |
Q |
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| T |
18293987 |
atgagtcaacactgcatgtagaacaggtttaaccttctcttcaccattctgatcactattttctaacaccagacttgcaattgcagcaccaactaggtcg |
18293888 |
T |
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| Q |
199 |
acaacgtcataaacagtatgaatcacaa |
226 |
Q |
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| T |
18293887 |
acaacgtcataaacaatatgaatcacaa |
18293860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 99 - 225
Target Start/End: Original strand, 1432388 - 1432511
Alignment:
| Q |
99 |
atgagtgaacaatgcctgtagaacaggtttaaccttctcttcaccattctgattactattttctaacaccagacttgcaattgcagcaccaactaggtcg |
198 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||| ||||| ||| |||||||||||||| | |
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| T |
1432388 |
atgagtgaacactgcctgtagaacaggtttaaccttctctt---cattctgatcactagtttctaacaccagatttgcatttgaagcaccaactaggttg |
1432484 |
T |
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| Q |
199 |
acaacgtcataaacagtatgaatcaca |
225 |
Q |
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| T |
1432485 |
acaacttccggaacggtatgaatcaca |
1432511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 80
Target Start/End: Complemental strand, 13037842 - 13037800
Alignment:
| Q |
38 |
tttgactttattttttgtaatggaaatagcttatacataagca |
80 |
Q |
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| T |
13037842 |
tttgactttatcttttgttatagaaatagcttatacataagca |
13037800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Complemental strand, 16889707 - 16889671
Alignment:
| Q |
44 |
tttattttttgtaatggaaatagcttatacataagca |
80 |
Q |
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||||| |||||| |||||||||||||||||||||||| |
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| T |
16889707 |
tttatcttttgttatggaaatagcttatacataagca |
16889671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 80
Target Start/End: Original strand, 25487643 - 25487679
Alignment:
| Q |
44 |
tttattttttgtaatggaaatagcttatacataagca |
80 |
Q |
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|||||||||||| || ||||||||||||||||||||| |
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| T |
25487643 |
tttattttttgttatagaaatagcttatacataagca |
25487679 |
T |
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