View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_high_47 (Length: 226)
Name: NF19829_high_47
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_high_47 |
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Alignment Details
Target: chr4 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 3 - 105
Target Start/End: Original strand, 25467722 - 25467828
Alignment:
| Q |
3 |
catgagctatccaaaaaatatttcttcaaataacatgcctcatccagaaatgtgaccaaccaagcaactactatttt----atacattatttgctttgtt |
98 |
Q |
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| T |
25467722 |
catgagctatccaaaaaatatttcttcaaataacatgcctcatccaaaaatgtgaccaaccaagcaactactattttatacatacattatttgctttgtt |
25467821 |
T |
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| Q |
99 |
tgtataa |
105 |
Q |
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| T |
25467822 |
tctataa |
25467828 |
T |
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Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 101 - 204
Target Start/End: Original strand, 25467982 - 25468079
Alignment:
| Q |
101 |
tataaatgtttactggtggacacacaatatcattatcagttctctcgccaatttgatttttccttggaaatcaatttatgtcacatttgcttagtgcttg |
200 |
Q |
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|||||||||||||||||||||||| | |||| |||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
25467982 |
tataaatgtttactggtggacacatagtatc------agttctctcgccaattggatttttccctggaaatcaatttgtgtcacatttgcttagtgcttg |
25468075 |
T |
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