View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_high_48 (Length: 222)
Name: NF19829_high_48
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 10 - 157
Target Start/End: Complemental strand, 29746696 - 29746548
Alignment:
| Q |
10 |
gattatacttatacatattctaaattataatttaatttaatattttccgtcccatattctcctttccagctagtcattcagcataatttgcaatgcactc |
109 |
Q |
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| T |
29746696 |
gattatacttatacatattctaaattataatttaatttaatattttccgtcccatattctcctttccagctagtcattcagcataatttgcaatgcactc |
29746597 |
T |
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| Q |
110 |
aatttaccttcaatgttatgcctaatatgcaacaactc-aatagatagt |
157 |
Q |
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| T |
29746596 |
aatttaccttcaatgttatgcctaatatgcaacaactcaaatagatagt |
29746548 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 29730410 - 29730355
Alignment:
| Q |
153 |
atagtaattggtgcatatatttgaaacagggcaagacagttacgacggttacaact |
208 |
Q |
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| T |
29730410 |
atagtaattggtgcatatatttgaaacagggcaagacagttacgacggttacaact |
29730355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 41100682 - 41100585
Alignment:
| Q |
12 |
ttatacttatacatattctaaattataatttaatttaatattttccgtcccatattctcctttccagctagtcattcagcataatttgcaatgcactcaa |
111 |
Q |
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| T |
41100682 |
ttatacttatacatactcaaaattataatttaacttaatattatttgtctcatattctccttt----ttagtcatttagaataatttgcaatgcactcaa |
41100587 |
T |
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