View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_high_49 (Length: 220)
Name: NF19829_high_49
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_high_49 |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 1e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 29 - 160
Target Start/End: Complemental strand, 36606866 - 36606735
Alignment:
| Q |
29 |
tcattaaatgaatgaaattgaaataatcaaattaacgtccacccaaaatcttgtttaagctaccgagaaaccaatatttcctcttttccatcactatttt |
128 |
Q |
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| T |
36606866 |
tcattaaataaatgaaattgaaataatcaaattaacgtctacccaaaatcttgtttaagctaccgagaaaccaatatttcctcttttccatcactatttt |
36606767 |
T |
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| Q |
129 |
gtacctcttctcctgcccaatttttccatcag |
160 |
Q |
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| T |
36606766 |
gttcctcttctcctgcccaatttttccatcag |
36606735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 191 - 220
Target Start/End: Complemental strand, 36606704 - 36606675
Alignment:
| Q |
191 |
tggcacatcacagagagaaataataacaac |
220 |
Q |
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| T |
36606704 |
tggcacatcacagagagaaataataacaac |
36606675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 96 - 130
Target Start/End: Complemental strand, 16343220 - 16343186
Alignment:
| Q |
96 |
aaaccaatatttcctcttttccatcactattttgt |
130 |
Q |
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| T |
16343220 |
aaaccaatatttcctcttttccatcactattttgt |
16343186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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