View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19829_high_5 (Length: 577)
Name: NF19829_high_5
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 89; Significance: 1e-42; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 75 - 322
Target Start/End: Original strand, 33624884 - 33625136
Alignment:
| Q |
75 |
tttccttcttttctttgctatacacgttccttttagaattcat----taagcaagatttatcgcaacaaattggtatcaaagagcattggttcgattcaa |
170 |
Q |
| |
|
||||||| |||||||| |||||||| || ||||| ||||||| |||| |||||||||| | |||||||| |||| ||||| || ||||||||| || |
|
|
| T |
33624884 |
tttccttgttttctttcctatacactttaattttacaattcatcaattaagaaagatttatccccacaaattgctatctaagagtat-ggttcgatttaa |
33624982 |
T |
|
| Q |
171 |
gctttc-gtcaatggcaaatggaagcacaacctcaaaccaattccc-tgcaaatctgctagttttcaaagaagaacactatgacagatggtgcgcacata |
268 |
Q |
| |
|
||||| ||| || || |||||||| ||||||||||||||| ||| || ||||||| |||||| |||| |||||| ||||| |||||||||||||||| |
|
|
| T |
33624983 |
gctttatgtcgatagcgaatggaagatcaacctcaaaccaatccccatgtaaatctgtaagtttttaaaggagaacattatgagagatggtgcgcacata |
33625082 |
T |
|
| Q |
269 |
tgagagtcatattcacgtttcaagatgttcttgagatcgtgaatgatggcatac |
322 |
Q |
| |
|
||||||||||||||| | |||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
33625083 |
tgagagtcatattcaagcttcaagattttcttgagatcgtaaatgatggcatac |
33625136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 165 - 211
Target Start/End: Original strand, 33628610 - 33628656
Alignment:
| Q |
165 |
attcaagctttcgtcaatggcaaatggaagcacaacctcaaaccaat |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33628610 |
attcaagctttcgtcaatggcaaatggaagcacaacctcaaaccaat |
33628656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 322
Target Start/End: Complemental strand, 1744832 - 1744783
Alignment:
| Q |
273 |
agtcatattcacgtttcaagatgttcttgagatcgtgaatgatggcatac |
322 |
Q |
| |
|
||||||||| | ||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
1744832 |
agtcatatttagatttcaagatgttcctgaaatcgtgaatgatggcatac |
1744783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33624787 - 33624844
Alignment:
| Q |
1 |
atgtgtgagtgtatat----ttaacaccacaatgcaataagaatgtaatcttcatgat |
54 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |||||| ||| |||||||| |
|
|
| T |
33624787 |
atgtgtgagtgtatataagcttaacaccacaatgcaattagaatgaaattttcatgat |
33624844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 398 - 458
Target Start/End: Original strand, 36867638 - 36867698
Alignment:
| Q |
398 |
tgttcttgatccattagtgtgtgggttcaaacatctttgagaagatcattgaggaagaaac |
458 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||| |
|
|
| T |
36867638 |
tgttattgatccattagtgtgagggttcaaacatcttcaagaagataattgatgaagaaac |
36867698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University