View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19829_high_9 (Length: 462)
Name: NF19829_high_9
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_high_9 |
 | |
|
| [»] scaffold0077 (7 HSPs) |
| | |
|
| [»] scaffold0003 (6 HSPs) |
| | |
|
Alignment Details
Target: scaffold0077 (Bit Score: 152; Significance: 3e-80; HSPs: 7)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 50445 - 50274
Alignment:
| Q |
1 |
gttaagttggtatatactatgacttcaataagatttaacagtaaacaactataaactcaaaacttttagtctatatgcgttcaatataaggaagtaactc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
50445 |
gttaagttggtatatactatgacttcaataagatttaacagtaaacaactataaactcataacttttagtttatatgcgttaaatataaggaagtaactc |
50346 |
T |
|
| Q |
101 |
ataacttttcaccatatgcgttaataatcatgatttccacagatcttttaagtttcaactccaacacccata |
172 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
50345 |
ataacttttcaccatatgtgttaataatcatgatttccacagatcttttaagtttcaactccaacaaccata |
50274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 1 - 172
Target Start/End: Complemental strand, 60198 - 60027
Alignment:
| Q |
1 |
gttaagttggtatatactatgacttcaataagatttaacagtaaacaactataaactcaaaacttttagtctatatgcgttcaatataaggaagtaactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
60198 |
gttaagttggtatatactatgacttcaataagatttaacagtaaacaattataaactcataacttttagtttatatgcgttaaatataaggaagtaactc |
60099 |
T |
|
| Q |
101 |
ataacttttcaccatatgcgttaataatcatgatttccacagatcttttaagtttcaactccaacacccata |
172 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
60098 |
ataacttttcaccatatgtgttaataatcatgatttccacagatcttttaagtttcaactccaacaaccata |
60027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 258 - 446
Target Start/End: Original strand, 48418 - 48605
Alignment:
| Q |
258 |
ttgtaaattgttataaatatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttcttatcactaaccagatgtggtgtgattca |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
48418 |
ttgtaaattgttataaatatttgtaatttgaagtaagcttgaaataaattaagaatcaattattttt-ttcttatcactaaccagatgtggtgtgattca |
48516 |
T |
|
| Q |
358 |
ttcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaacacgtgacgatgtgaaattaaaatttgtcaaatcattaaat |
446 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48517 |
ttcgtcgacgactactttttccagcctcattgtcatgtgttccttgaacacatgacgatgtgaaattaaaatttgtcaaatcattaaat |
48605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #4
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 258 - 446
Target Start/End: Original strand, 58173 - 58360
Alignment:
| Q |
258 |
ttgtaaattgttataaatatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttcttatcactaaccagatgtggtgtgattca |
357 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
58173 |
ttgtaaattgttataaatatttgtaatttgaagtaagcttgaaataaattaagaatcaattattttt-ttcttatcactaaccagatgtggtgtgattca |
58271 |
T |
|
| Q |
358 |
ttcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaacacgtgacgatgtgaaattaaaatttgtcaaatcattaaat |
446 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
58272 |
ttcgtcgacgactactttttccagcctcattgtcatgtgttccttgaacacatgacgatgtgaaattaaaatttgtcaaatcattaaat |
58360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 237 - 405
Target Start/End: Original strand, 47781 - 47945
Alignment:
| Q |
237 |
ttattaaaaatgagtaatatattgtaaattgttataaa--tatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttctta--t |
332 |
Q |
| |
|
||||||||||||||||||||| |||| ||| ||||| | ||||||||||| |||||||||||||||||||||||||| ||| || ||| | |
|
|
| T |
47781 |
ttattaaaaatgagtaatataatgtatattcttatataagtatttgtaatt-gaagtaagcttgaaataaattaagaaacaatt-------ttattatgt |
47872 |
T |
|
| Q |
333 |
cactaaccagatgtggtgtgattcattcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaa |
405 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||||||||| ||||||| |||| ||||| || ||||||| |
|
|
| T |
47873 |
cactaaccagatgtggtgttatggaatcgtcgacgactacttggtccagccacattatcatgagttccttgaa |
47945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 215
Target Start/End: Original strand, 47284 - 47317
Alignment:
| Q |
182 |
aatgttatgatagtcaagtataagtaactatgtt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
47284 |
aatgttatgatagtcaagtataagtaactatgtt |
47317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 38900 - 38934
Alignment:
| Q |
182 |
aatgttatgatagtcaagtataagtaactatgtta |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
38900 |
aatgttatgatagtcaagtataagtacctatgtta |
38934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 146; Significance: 1e-76; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 237 - 446
Target Start/End: Original strand, 36098423 - 36098627
Alignment:
| Q |
237 |
ttattaaaaatgagtaatatattgtaaattgttataaatatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttcttatcact |
336 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| || |||||||| |
|
|
| T |
36098423 |
ttattaaaaatgattaatatattgtaaattgttataagtatttataatttgaagtaagcttgaaataaattaagaaacaataat-----tttttatcact |
36098517 |
T |
|
| Q |
337 |
aaccagatgtggtgtgattcattcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaacacgtgacgatgtgaaattaaaatttgtcaa |
436 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36098518 |
aaccagatgtggtgtgattgattcgtcgacgactacttgttccagcctcattgtcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaa |
36098617 |
T |
|
| Q |
437 |
atcattaaat |
446 |
Q |
| |
|
|||||||||| |
|
|
| T |
36098618 |
atcattaaat |
36098627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 237 - 446
Target Start/End: Original strand, 22311369 - 22311576
Alignment:
| Q |
237 |
ttattaaaaatgagtaatatattgtaaattgttataaatatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttcttatcact |
336 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||| ||| ||||||| |
|
|
| T |
22311369 |
ttattaaaaatgattaatatattgtaaattgttataagtatttgtaatttgaagtaagcttgaaacaaattaagaaacaatattttttctt--tatcact |
22311466 |
T |
|
| Q |
337 |
aaccagatgtggtgtgattcattcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaacacgtgacgatgtgaaattaaaatttgtcaa |
436 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| ||||| ||||||||||| |
|
|
| T |
22311467 |
aaccagatgtggtgtgattgattcgtcgacgactacttgttccagccttattgtcatgtgttccttgaacatgtgacgatgtaaaatttaaatttgtcaa |
22311566 |
T |
|
| Q |
437 |
atcattaaat |
446 |
Q |
| |
|
|||||||||| |
|
|
| T |
22311567 |
atcattaaat |
22311576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 237 - 405
Target Start/End: Original strand, 22311147 - 22311311
Alignment:
| Q |
237 |
ttattaaaaatgagtaatatattgtaaattgttataaa--tatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttcttatca |
334 |
Q |
| |
|
||||||||||||||||||||| |||| ||| ||||| | ||||||||||| |||||||||||||||||||||||||| ||| | | ||| |
|
|
| T |
22311147 |
ttattaaaaatgagtaatataatgtatattcttatataagtatttgtaatt-gaagtaagcttgaaataaattaagaaacaattata-----ttatgtca |
22311240 |
T |
|
| Q |
335 |
ctaaccagatgtggtgtgattcattcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaa |
405 |
Q |
| |
|
||||||||||||||||||||| | || ||||||| |||||| |||||||||||| ||||| || ||||||| |
|
|
| T |
22311241 |
ctaaccagatgtggtgtgattgaatcatcgacgattacttggtccagcctcattatcatgagttccttgaa |
22311311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 237 - 405
Target Start/End: Original strand, 36098201 - 36098365
Alignment:
| Q |
237 |
ttattaaaaatgagtaatatattgtaaattgttataaa--tatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttcttatca |
334 |
Q |
| |
|
|||| |||||||||||||||| |||| ||| ||||| | ||||||||||| |||||||||||||||||||||||||| ||| | ||||| |
|
|
| T |
36098201 |
ttataaaaaatgagtaatataatgtatattcttatataagtatttgtaatt-gaagtaagcttgaaataaattaagaaacaattata-----ttatatca |
36098294 |
T |
|
| Q |
335 |
ctaaccagatgtggtgtgattcattcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaa |
405 |
Q |
| |
|
|||||||||||||||||||| | | ||||| |||||||| |||| ||||||| ||||| || ||||||| |
|
|
| T |
36098295 |
ctaaccagatgtggtgtgatagaattatcgactactacttgatccaacctcattatcatgagttccttgaa |
36098365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 237 - 443
Target Start/End: Complemental strand, 41932164 - 41931962
Alignment:
| Q |
237 |
ttattaaaaatgagtaatatattgtaaattgttataaatatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttcttatcact |
336 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || ||| || |||||||| |
|
|
| T |
41932164 |
ttattaaaaatgattaatatattgtaaattgttataagtatttgtaatttgaagtaagctttaaataaattaataaacaatattt----tttttatcact |
41932069 |
T |
|
| Q |
337 |
aaccagatgtggtgtgattcattcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaacacgtgacgatgtgaaattaaaatttgtcaa |
436 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
41932068 |
aaccagatgtggtgtgattgattcgtcgacgactacttgttccagcctcattgtcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaa |
41931969 |
T |
|
| Q |
437 |
atcatta |
443 |
Q |
| |
|
||||||| |
|
|
| T |
41931968 |
atcatta |
41931962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 41930000 - 41930135
Alignment:
| Q |
1 |
gttaagttggtatatactatgacttcaataagatttaacagtaaacaactataaactcaaaacttttagtctatatgcgttcaatataaggaagtaactc |
100 |
Q |
| |
|
|||||||| |||||||||||||||| |||||||||| ||||||||||| |||||||||| |||||||||| |||||||||| |||||||||||||||| | |
|
|
| T |
41930000 |
gttaagtttgtatatactatgacttgaataagatttcacagtaaacaaatataaactcataacttttagtttatatgcgttaaatataaggaagtaacgc |
41930099 |
T |
|
| Q |
101 |
ataacttttcaccatatgcgttaataatcatgattt |
136 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
41930100 |
ataacttttcaccatatacgttaataatcataattt |
41930135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 135; Significance: 4e-70; HSPs: 6)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 237 - 443
Target Start/End: Original strand, 213015 - 213216
Alignment:
| Q |
237 |
ttattaaaaatgagtaatatattgtaaattgttataaatatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttcttatcact |
336 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| || ||| || |||||||| |
|
|
| T |
213015 |
ttattaaaaatgattaatatattgtaaattgttataagtatttgtaatttgaagtaagattgaaataaattagtaaacaatatt-----tttttatcact |
213109 |
T |
|
| Q |
337 |
aaccagatgtggtgtgattcattcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaacacgtgacgatgtgaaattaaaatttgtcaa |
436 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
213110 |
aaccagatgtggtgtgattgattcgtcgacgactacttgttccagcctcattgtcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaa |
213209 |
T |
|
| Q |
437 |
atcatta |
443 |
Q |
| |
|
||||||| |
|
|
| T |
213210 |
atcatta |
213216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 237 - 446
Target Start/End: Original strand, 207963 - 208167
Alignment:
| Q |
237 |
ttattaaaaatgagtaatatattgtaaattgttataaatatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttcttatcact |
336 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || ||| || || ||||| |
|
|
| T |
207963 |
ttattaaaaatgattaatatattgtaaattattataagtatttgtaatttgaagtaagcttgaaataaattaataaacaatata-----tttttttcact |
208057 |
T |
|
| Q |
337 |
aaccagatgtggtgtgattcattcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaacacgtgacgatgtgaaattaaaatttgtcaa |
436 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
208058 |
aaccagatgtggtgtgattgattcgtcgacgactacttattccagcctcattgtcatgtgttccttgaacacgtgacgatgtgaaatttaaatttgtcaa |
208157 |
T |
|
| Q |
437 |
atcattaaat |
446 |
Q |
| |
|
|||||||||| |
|
|
| T |
208158 |
atcattaaat |
208167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 237 - 405
Target Start/End: Original strand, 212793 - 212957
Alignment:
| Q |
237 |
ttattaaaaatgagtaatatattgtaaattgttataaa--tatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttcttatca |
334 |
Q |
| |
|
||||||||||||||||||||| |||| ||| ||||| | |||||||| ||||||||| ||||||||||||||||||| ||| | | ||| |
|
|
| T |
212793 |
ttattaaaaatgagtaatataatgtatattcttatataagtatttgta-tttgaagtatgcttgaaataaattaagaaacaattata-----ttatgtca |
212886 |
T |
|
| Q |
335 |
ctaaccagatgtggtgtgattcattcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaa |
405 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |||||||||||| | ||| || ||||||| |
|
|
| T |
212887 |
ctaaccagatgtggtgtgattgaatcgtcgacgactacttggtccagcctcattatgatgagttccttgaa |
212957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 237 - 405
Target Start/End: Original strand, 207741 - 207905
Alignment:
| Q |
237 |
ttattaaaaatgagtaatatattgtaaattgt--tataaatatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttcttatca |
334 |
Q |
| |
|
||||||||||||||||||||| |||| ||| | ||||| ||||||||||| ||||||||||||||||||||| ||| ||| | | ||| |
|
|
| T |
207741 |
ttattaaaaatgagtaatataatgtatattctgatataagtatttgtaatt-gaagtaagcttgaaataaattttgaaacaattata-----ttatgtca |
207834 |
T |
|
| Q |
335 |
ctaaccagatgtggtgtgattcattcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaa |
405 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||| |||||||||||| | ||| || ||||||| |
|
|
| T |
207835 |
ctaaccagatgtggtgtgattgaatcgtcgacgactacttggtccagcctcattatgatgagttccttgaa |
207905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 206691 - 206725
Alignment:
| Q |
182 |
aatgttatgatagtcaagtataagtaactatgtta |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
206691 |
aatgttatgatagtcaagtataagtacctatgtta |
206725 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 216
Target Start/End: Original strand, 211746 - 211780
Alignment:
| Q |
182 |
aatgttatgatagtcaagtataagtaactatgtta |
216 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |
|
|
| T |
211746 |
aatgttatgatagtcaagtataagtacctatgtta |
211780 |
T |
|
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Target: chr8 (Bit Score: 112; Significance: 2e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 251 - 446
Target Start/End: Original strand, 29640456 - 29640647
Alignment:
| Q |
251 |
taatatattgtaaattgttataaatatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttcttatcactaaccagatgtggtg |
350 |
Q |
| |
|
|||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||||| |
|
|
| T |
29640456 |
taatatattgtaaattattataggtatctgtaatttgaagtaagcttgaaataaattaagaaacaataatt----tttttatcactaaccagatgtggtg |
29640551 |
T |
|
| Q |
351 |
tgattcattcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaacacgtgacgatgtgaaattaaaatttgtcaaatcattaaat |
446 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||| ||| | |||||||||||| ||||||||||| ||||||||||||||||||||| |
|
|
| T |
29640552 |
tgattgattcgtcgacgaatacttgttccagcctcattgtcatttgtacgttgaacacgtgaggatgtgaaatttaaatttgtcaaatcattaaat |
29640647 |
T |
|
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Target: chr8; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 237 - 405
Target Start/End: Original strand, 29640222 - 29640384
Alignment:
| Q |
237 |
ttattaaaaatgagtaatatattgtaaattgttataaatatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttcttatcact |
336 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||| ||||||||| |||||||||||||||||||||||||||| ||| || | ||||| |
|
|
| T |
29640222 |
ttattaaaaatgagtaatataatgtatattcttataagtatttgtaa-ttgaagtaagcttgaaataaattaagaaacaattat-----tttatctcact |
29640315 |
T |
|
| Q |
337 |
aaccagatgtggtgtgattcattcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaa |
405 |
Q |
| |
|
||||||||| ||||||||| | ||||||||||||||||| |||||||||||| ||||| || ||||||| |
|
|
| T |
29640316 |
aaccagatgcggtgtgattgaatcgtcgacgactacttggtccagcctcattatcatgagttccttgaa |
29640384 |
T |
|
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Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 241 - 435
Target Start/End: Complemental strand, 17099559 - 17099369
Alignment:
| Q |
241 |
taaaaatgagtaatatattgtaaattgttataaatatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttcttatcactaacc |
340 |
Q |
| |
|
|||||| || ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| || || |||||||||||| |
|
|
| T |
17099559 |
taaaaaggattaatatattgtaaattgttataagtatctgtaatttgaagtaagcttgaaataaattaagaaaaaatattt----tttttatcactaacc |
17099464 |
T |
|
| Q |
341 |
agatgtggtgtgattcattcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaacacgtgacgatgtgaaattaaaatttgtca |
435 |
Q |
| |
|
|||||||||||| || |||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||||| |
|
|
| T |
17099463 |
agatgtggtgtggttgattcgtcgacgaatacttgttccagcctcattgtcatgtgtacgttgaacacgtgacgatgtgaaatttaaatttgtca |
17099369 |
T |
|
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Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 237 - 405
Target Start/End: Complemental strand, 17099783 - 17099621
Alignment:
| Q |
237 |
ttattaaaaatgagtaatatattgtaaattgttataaatatttgtaatttgaagtaagcttgaaataaattaagaatcaannnnnnnncttcttatcact |
336 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||| ||||||||| ||||||||||||| |||||||||||||| ||| || | ||||| |
|
|
| T |
17099783 |
ttattaaaaatgagtaatataatgtatattcttataagtatttgtaa-ttgaagtaagcttaaaataaattaagaaacaattat-----tttatctcact |
17099690 |
T |
|
| Q |
337 |
aaccagatgtggtgtgattcattcgtcgacgactacttgttccagcctcattgtcatgtgtgccttgaa |
405 |
Q |
| |
|
||||||||| ||||||||| | ||||||||||||||||| |||||||||||| ||||| || ||||||| |
|
|
| T |
17099689 |
aaccagatgcggtgtgattgaatcgtcgacgactacttggtccagcctcattatcatgagttccttgaa |
17099621 |
T |
|
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