View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19829_low_1 (Length: 666)

Name: NF19829_low_1
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19829_low_1
NF19829_low_1
[»] chr4 (10 HSPs)
chr4 (13-328)||(9137416-9137727)
chr4 (435-529)||(9137077-9137171)
chr4 (340-401)||(9137340-9137401)
chr4 (116-247)||(8040289-8040416)
chr4 (400-524)||(8040051-8040177)
chr4 (427-520)||(8034688-8034781)
chr4 (546-618)||(8034426-8034500)
chr4 (546-618)||(8039838-8039912)
chr4 (426-494)||(6035337-6035405)
chr4 (400-469)||(8406070-8406141)
[»] chr7 (1 HSPs)
chr7 (400-525)||(5478560-5478684)
[»] chr5 (4 HSPs)
chr5 (400-529)||(31402409-31402540)
chr5 (546-608)||(31402147-31402211)
chr5 (127-266)||(31326331-31326467)
chr5 (127-266)||(31373780-31373916)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 328
Target Start/End: Complemental strand, 9137727 - 9137416
Alignment:
Q  13 aatatgtgatctcagaaccattctcagatttgctttgttaatttagttctacttgttagtgtttttgatgctatttactttttacttactgaagtcatat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    ||||||||||||||||||||    
T  9137727 aatatgtgatctcagaaccattctcagatttgctttgttaatttacttctacttgttagtgtttttgatgctattt----tttacttactgaagtcatat 9137632  T
Q  113 atctctcatctctttaactaattatgactaatagaaaattgtaactaatatcattgagaaaatttacacctacttcgttcttttaattctcttcttttgt 212  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  9137631 atctctcatctctataactaattatgactaatagaaaattgtaactaatatcattgagaaaatttacacctacttcgttcttttaattcttttcttttgt 9137532  T
Q  213 aaatttataatttacaatctcaatttacattgtgagtggatggcatcttgatggcttaatcctaaactatatagtatgtgtgtgagtatattttggttga 312  Q
    |||||||||||||| | ||||||||||||||||||||| |||||||| |||||||| |||| |||||||||||||||||||||||||||||||| |||||    
T  9137531 aaatttataatttaaattctcaatttacattgtgagtgcatggcatcgtgatggctcaatcgtaaactatatagtatgtgtgtgagtatatttttgttga 9137432  T
Q  313 aactcgaaagaaatag 328  Q
    ||||||||||||||||    
T  9137431 aactcgaaagaaatag 9137416  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 435 - 529
Target Start/End: Complemental strand, 9137171 - 9137077
Alignment:
Q  435 tgtctcgaacaagtcaaggattttaaaaatacgccaggctgaagggtttcaatttgcaaatgaattagaaatattcagcagttgaattatcgctc 529  Q
    |||| |||||||||||||||||||||| ||| |||||||||||||||||| |||||||||| ||| ||||| |||||||||||||||||||||||    
T  9137171 tgtcgcgaacaagtcaaggattttaaacatatgccaggctgaagggtttcgatttgcaaataaatcagaaaaattcagcagttgaattatcgctc 9137077  T

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Target: chr4; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 340 - 401
Target Start/End: Original strand, 9137340 - 9137401
Alignment:
Q  340 aattttacaagaatatcctttggttgttgatcgagaaggaacttctttaacaagccaaatga 401  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  9137340 aattttacaagaatatcctttggttgttgatcgagaagaaacttctttaacaagccaaatga 9137401  T

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Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 116 - 247
Target Start/End: Complemental strand, 8040416 - 8040289
Alignment:
Q  116 tctcatctctttaactaattatgactaatagaaaa-ttgtaactaatatcattgagaaaatttacacctacttcgttcttttaattctcttcttttgtaa 214  Q
    |||||||||| |||||||||||||||||||||||| |||||||  |||||  || ||||||||||||||||||| ||||||||||||| | ||||||||     
T  8040416 tctcatctctctaactaattatgactaatagaaaaattgtaacatatatctgtgtgaaaatttacacctacttctttcttttaattctttacttttgta- 8040318  T
Q  215 atttataatttacaatctcaatttacattgtga 247  Q
         ||||||| ||||||||||| ||||||||    
T  8040317 ----gtaatttataatctcaatttgcattgtga 8040289  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 400 - 524
Target Start/End: Complemental strand, 8040177 - 8040051
Alignment:
Q  400 gaaacaatgatttaaattcatgtgtcagatcaca--gtgtctcgaacaagtcaaggattttaaaaatacgccaggctgaagggtttcaatttgcaaatga 497  Q
    |||||||||||| |||||||||  |||| |||||  ||||||||||||||| |||||||||||| |||  |||||||||| || ||||||||||||| ||    
T  8040177 gaaacaatgattcaaattcatgaatcagctcacacagtgtctcgaacaagttaaggattttaaacatataccaggctgaatggcttcaatttgcaaacga 8040078  T
Q  498 attagaaatattcagcagttgaattat 524  Q
    || || || | ||||||||||||||||    
T  8040077 atcagcaaaaatcagcagttgaattat 8040051  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 427 - 520
Target Start/End: Complemental strand, 8034781 - 8034688
Alignment:
Q  427 gatcacagtgtctcgaacaagtcaaggattttaaaaatacgccaggctgaagggtttcaatttgcaaatgaattagaaatattcagcagttgaa 520  Q
    |||||||||||||| ||||||| ||||||| |||| ||| ||||||||||| |  ||||||| ||||| |||| || || ||||||||||||||    
T  8034781 gatcacagtgtctcaaacaagttaaggattctaaacataggccaggctgaatgacttcaattagcaaacgaatcagcaaaattcagcagttgaa 8034688  T

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Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 618
Target Start/End: Complemental strand, 8034500 - 8034426
Alignment:
Q  546 cattccttacggtaactgttgtaaatctaataacactctttc--aaatccagaatacaccatcaacttcgccgtt 618  Q
    |||||||||| |||||||| |||||||| ||| |||||||||  ||||||||||| ||||||||| ||| |||||    
T  8034500 cattccttacagtaactgtcgtaaatctcatagcactctttctcaaatccagaatccaccatcaatttcaccgtt 8034426  T

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Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 618
Target Start/End: Complemental strand, 8039912 - 8039838
Alignment:
Q  546 cattccttacggtaactgttgtaaatctaataacactctt--tcaaatccagaatacaccatcaacttcgccgtt 618  Q
    |||||||||| ||||||||||||||||| ||| |||||||  ||||||||||||| | ||||||| ||| |||||    
T  8039912 cattccttacagtaactgttgtaaatctcatagcactctttctcaaatccagaatccgccatcaatttcaccgtt 8039838  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 426 - 494
Target Start/End: Complemental strand, 6035405 - 6035337
Alignment:
Q  426 agatcacagtgtctcgaacaagtcaaggattttaaaaatacgccaggctgaagggtttcaatttgcaaa 494  Q
    ||||||||  ||||| |||||||| ||||||||||| | ||  || | |||||||||||||||||||||    
T  6035405 agatcacacagtctcaaacaagtcgaggattttaaacaaacatcatggtgaagggtttcaatttgcaaa 6035337  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 400 - 469
Target Start/End: Original strand, 8406070 - 8406141
Alignment:
Q  400 gaaacaatgatttaaattcatgtgtcagat--cacagtgtctcgaacaagtcaaggattttaaaaatacgcc 469  Q
    |||| ||||||| ||||||||| |||||||  |||||||||||||||||||  || ||||| || |||||||    
T  8406070 gaaaaaatgattcaaattcatgagtcagatcacacagtgtctcgaacaagttgagaattttgaacatacgcc 8406141  T

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Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 400 - 525
Target Start/End: Original strand, 5478560 - 5478684
Alignment:
Q  400 gaaacaatgatttaaattcatgtgtcagatcacagtgtctcgaacaagtcaaggattttaaaaatacgccaggctgaagggtttcaatttgcaaatgaat 499  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||||  |||||||| || |||| ||| ||||||| | ||  ||||||||||||||    
T  5478560 gaaacaatgattcaaattcatgagtcagatcacagtgtctcgaacaagttgaggattttgaacatacaccatgctgaagtgctt-tatttgcaaatgaat 5478658  T
Q  500 tagaaatattcagcagttgaattatc 525  Q
     |||||  ||||||||||||||||||    
T  5478659 cagaaaacttcagcagttgaattatc 5478684  T

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Target: chr5 (Bit Score: 61; Significance: 8e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 400 - 529
Target Start/End: Complemental strand, 31402540 - 31402409
Alignment:
Q  400 gaaacaatgatttaaattcatgtgtcagatcaca--gtgtctcgaacaagtcaaggattttaaaaatacgccaggctgaagggtttcaatttgcaaatga 497  Q
    |||||||||||| |||||||||  ||||||||||  |||||||||||||||  ||||||||||| |||||||| | ||||||| ||| ||||||||| ||    
T  31402540 gaaacaatgattcaaattcatgaatcagatcacacagtgtctcgaacaagttgaggattttaaacatacgccatggtgaagggcttcgatttgcaaacga 31402441  T
Q  498 attagaaatattcagcagttgaattatcgctc 529  Q
    || || || |||||| ||||||||||||||||    
T  31402440 atcagcaaaattcagaagttgaattatcgctc 31402409  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 546 - 608
Target Start/End: Complemental strand, 31402211 - 31402147
Alignment:
Q  546 cattccttacggtaactgttgtaaatctaataacactctt--tcaaatccagaatacaccatcaa 608  Q
    |||||||||||||||||||||||||||| ||| |||||||  ||||||||||||| |||||||||    
T  31402211 cattccttacggtaactgttgtaaatctcatagcactctttctcaaatccagaatccaccatcaa 31402147  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 266
Target Start/End: Complemental strand, 31326467 - 31326331
Alignment:
Q  127 taactaattatgactaatagaaaa-ttgtaactaatatcattgagaaaatttacacctacttcgttcttttaattctcttcttttgtaaatttataattt 225  Q
    |||||||| ||||||||||||||| ||||||  ||||||  ||||||| |||||||||||||| ||||||| | | | ||||||  ||| || |||||||    
T  31326467 taactaatcatgactaatagaaaaattgtaa--aatatctgtgagaaa-tttacacctacttctttcttttta-tattttctttcataacttcataattt 31326372  T
Q  226 acaatctcaatttacattgtgagtggatggcatcttgatgg 266  Q
    | ||| || ||||||||||  || | |||||||||||||||    
T  31326371 ataatgtcgatttacattgcaagggcatggcatcttgatgg 31326331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 127 - 266
Target Start/End: Complemental strand, 31373916 - 31373780
Alignment:
Q  127 taactaattatgactaatagaaaa-ttgtaactaatatcattgagaaaatttacacctacttcgttcttttaattctcttcttttgtaaatttataattt 225  Q
    |||||||  ||||||||||||||| ||||||  ||||||  ||||||| |||||||||||||| ||||||| | | | ||||||  ||| || |||||||    
T  31373916 taactaaacatgactaatagaaaaattgtaa--aatatctgtgagaaa-tttacacctacttctttcttttta-tattttctttcataacttcataattt 31373821  T
Q  226 acaatctcaatttacattgtgagtggatggcatcttgatgg 266  Q
    | ||| || ||||||||||  || | |||||||||||||||    
T  31373820 ataatgtcgatttacattgcaagggcatggcatcttgatgg 31373780  T

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