View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_low_11 (Length: 439)
Name: NF19829_low_11
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_low_11 |
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| [»] scaffold0077 (2 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0295 (1 HSPs) |
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Alignment Details
Target: scaffold0077 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 50457 - 50885
Alignment:
| Q |
1 |
taaagtttatgacacacaaaggtacacaaaattcaccaacttgtatgttatccaaattaaagaataatgcaaaataatttaatgaaagttagtggaacct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50457 |
taaagtttatgacacacaaaggtacacaaaattcaccaacttgtatgttatccaaattaaagaataatgcaaaataatttaatgaaagttagtggaacct |
50556 |
T |
|
| Q |
101 |
gtgttttcttgtagtagccaaaattgtttgaaatggtcctccacgtgatatccacaaacgtatttcttcttctctcaataatgtttcaaccattcaattg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50557 |
gtattttcttgtagtagccaaaattgtttgaaatggtcctccacgtgatatccacaaacgtatttcttcttctctcaataatgtttcaaccattcaattg |
50656 |
T |
|
| Q |
201 |
ttcaatggatttggttaactttaatttcatttaatttttgtgttggaataaatgatagnnnnnnnngttgaggaagaaacaaatgatggttgtaagttgc |
300 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
50657 |
ttcaatggatttggttaactttaatttcgtttgatttttgttttggaataaatgatagttttttctgttgtggaagaaacaaatgatggttgtaagttgc |
50756 |
T |
|
| Q |
301 |
aattgtttcaaggtttaaactacctgcaattttctttttcttgcaccagttctcattgtataggtattgattttatttcttttgcagcagttacgcatac |
400 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
50757 |
aattgtttcaaggtttaaactacctgcagttttctttttcttgcaccagttctcattgcataggtattgattttattttttttgcagcagttacgcatac |
50856 |
T |
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| Q |
401 |
gtataacttcttgcagtcatcagtattat |
429 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
50857 |
gtataacttcttgcagtcatcagtattat |
50885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 60210 - 60633
Alignment:
| Q |
1 |
taaagtttatgacacacaaaggtacacaaaattcaccaacttgtatgttatccaaattaaagaataatgcaaaataatttaatgaaagttagtggaacct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
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| T |
60210 |
taaagtttatgacacacaaaggtacacaaaattcaccaacttgtatgttatccaaa-----gaataatgcaaagtaatttaatgaaagttagtggaacct |
60304 |
T |
|
| Q |
101 |
gtgttttcttgtagtagccaaaattgtttgaaatggtcctccacgtgatatccacaaacgtatttcttcttctctcaataatgtttcaaccattcaattg |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
60305 |
gtattttcttgtagtagccaaaattgtttgaaatggtcctccacgtgatatccacaaacgtatttcttcttctctcaataatgtttcaaccattcaattg |
60404 |
T |
|
| Q |
201 |
ttcaatggatttggttaactttaatttcatttaatttttgtgttggaataaatgatagnnnnnnnngttgaggaagaaacaaatgatggttgtaagttgc |
300 |
Q |
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|||||||||||||||||||||||||||| ||| |||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
60405 |
ttcaatggatttggttaactttaatttcgtttgatttttgttttggaataaatgatagttttttctgttgtggaagaaacaaatgatggttgtaagttgc |
60504 |
T |
|
| Q |
301 |
aattgtttcaaggtttaaactacctgcaattttctttttcttgcaccagttctcattgtataggtattgattttatttcttttgcagcagttacgcatac |
400 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
60505 |
aattgtttcaaggtttaaactacctgcagttttctttttcttgcaccagttctcattgcataggtattgattttattttttttgcagcagttacgcatac |
60604 |
T |
|
| Q |
401 |
gtataacttcttgcagtcatcagtattat |
429 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
60605 |
gtataacttcttgcagtcatcagtattat |
60633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 41929988 - 41929792
Alignment:
| Q |
1 |
taaagtttatgacacacaaaggtacacaaaattcaccaacttgtatgttatccaaattaaagaataatgcaaaataatttaatgaaagttagtggaacct |
100 |
Q |
| |
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|||||||||||||||| ||||||| |||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| || |||||| |
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| T |
41929988 |
taaagtttatgacacagaaaggtaaacaaaatt----aacttgtatgttatccaaa-----gaataatgcaaagtaatttaatgaaagtatgtagaacct |
41929898 |
T |
|
| Q |
101 |
gtgttttcttgtagtagccaaaattgtttgaaatggtcctccacgtgatatccacaaacgtatttcttcttctctcaataatgtttcaaccattcaattg |
200 |
Q |
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|| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
41929897 |
gtatcttcttgtagtagccaaaattgtttgaactggtcctccacgtgatatccacaaacgtatttcttcttctctcaacaatgtttcaaccattcaattg |
41929798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 35 - 178
Target Start/End: Original strand, 209715 - 209854
Alignment:
| Q |
35 |
accaacttgtatgttatccaaattaaagaataatgcaaaataatttaatgaaagttagtggaacctgtgttttcttgtagtagcc-aaaattgtttgaaa |
133 |
Q |
| |
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|||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| |
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| T |
209715 |
accaacttgtatgttatccaaa-----gaataatgcaaagtaatttaatgaaagttagtggaacctgtatcttcttgtagtagccaaaaattgtttgaaa |
209809 |
T |
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| Q |
134 |
tggtcctccacgtgatatccacaaacgtatttcttcttctctcaa |
178 |
Q |
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||||| ||||| ||||||| ||||||||| ||||||||||||||| |
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| T |
209810 |
tggtcttccacatgatatcgacaaacgtaattcttcttctctcaa |
209854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 198 - 344
Target Start/End: Original strand, 22377363 - 22377512
Alignment:
| Q |
198 |
ttgttcaatggatttggttaactttaatttcatttaatttttgtgttggaataaatgatagnnnnnnnn---gttgaggaagaaacaaatgatggttgta |
294 |
Q |
| |
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||||||||||||||||||| |||||||||| ||| |||||||| || ||||||||||||| |||||||||| |||||| |||||||||| |
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| T |
22377363 |
ttgttcaatggatttggttc-ctttaatttcgtttgatttttgttttagaataaatgatagttttgttttttgttgaggaaggaacaaaggatggttgta |
22377461 |
T |
|
| Q |
295 |
agttgcaattgtttcaaggtttaaac-tacctgcaattttctttttcttgc |
344 |
Q |
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|||||||||| ||||||||||||||| |||||||| ||||||||||||||| |
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| T |
22377462 |
agttgcaattatttcaaggtttaaacgtacctgcagttttctttttcttgc |
22377512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 267 - 344
Target Start/End: Complemental strand, 9368407 - 9368329
Alignment:
| Q |
267 |
gttgaggaagaaacaaatgatggttgtaagttgcaattgtttcaaggtttaaac-tacctgcaattttctttttcttgc |
344 |
Q |
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|||||||||| || ||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
9368407 |
gttgaggaaggaataaaggatggttgtaagttgcaattgtttcaaggtttaaacgtacctgcagttttctttttcttgc |
9368329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 258
Target Start/End: Complemental strand, 9368482 - 9368423
Alignment:
| Q |
198 |
ttgttcaatggatttggttaactttaatttcatttaatttttgtgttggaataaatgatag |
258 |
Q |
| |
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||||||||||| ||||||| ||||||||| ||| |||||||| |||||||||||||||| |
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| T |
9368482 |
ttgttcaatgggtttggttct-tttaatttcgtttgatttttgttttggaataaatgatag |
9368423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 17818 - 17776
Alignment:
| Q |
1 |
taaagtttatgacacacaaaggtacacaaaattcaccaacttg |
43 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17818 |
taaagtttatgacacacaaaggtacacaaaattcaccaacttg |
17776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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