View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_low_12 (Length: 435)
Name: NF19829_low_12
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 161 - 430
Target Start/End: Complemental strand, 41631270 - 41631001
Alignment:
| Q |
161 |
agagtagattcgccgtgtcgataaggattcaactcagatttcccaagtttttggattcgagtttagcagccgatgtaaagatctcatcgatggtaataga |
260 |
Q |
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| T |
41631270 |
agagtagattcgccgtgtcgataaggattcaactcagatttgccaagtttttggattcgagtttagcagccgatgtaaagatctcatcgatggtaataga |
41631171 |
T |
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| Q |
261 |
tgagtgctcgtttggatctgcgtccaaaatacttcaaacatgcaaaaacgagaagctacaaattggggcatgtggtggaaatgccttgggaagtatgtgc |
360 |
Q |
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| T |
41631170 |
tgagtgctcgttttgatctgcgtccaaaatacttcaaacatgcaaaaacgagaagctacaaattggggcatgtggtggaaatgccttgggaagtatgtgc |
41631071 |
T |
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| Q |
361 |
aaatatgagtatccaaacacataccaagtgtttttgtgaacgttctttgagccttgagattttcttggac |
430 |
Q |
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| T |
41631070 |
aaacatgagtatccaaacacataccaagtgtttttgtgaacgttctttgagccttgagattttattggac |
41631001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 41631407 - 41631270
Alignment:
| Q |
1 |
ttctgactccttctttggaatcattgctttcatgcttcacgcttaaaacaatatgaactcaacaaaccaatacagacagaaaagaagtcaataatgaaga |
100 |
Q |
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| T |
41631407 |
ttctgactccttctttggaatcattgctttcatgcttcacgcttaaaacaatatgaactcaacaaaccaatacagacagaaaagaagtcaataatgaaga |
41631308 |
T |
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| Q |
101 |
gagagatagtgatcaatttatttacatatttattttga |
138 |
Q |
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| T |
41631307 |
gagagatagtgatcaatttatttacatatttattttga |
41631270 |
T |
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