View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19829_low_13 (Length: 434)

Name: NF19829_low_13
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19829_low_13
NF19829_low_13
[»] chr3 (11 HSPs)
chr3 (8-419)||(44374301-44374713)
chr3 (16-82)||(37273144-37273210)
chr3 (26-82)||(31010422-31010478)
chr3 (16-79)||(52619013-52619076)
chr3 (16-82)||(10357443-10357509)
chr3 (42-79)||(1360523-1360560)
chr3 (33-82)||(3044253-3044302)
chr3 (29-82)||(10073210-10073263)
chr3 (33-82)||(25925769-25925818)
chr3 (41-82)||(38318995-38319036)
chr3 (34-82)||(36200124-36200172)
[»] chr8 (14 HSPs)
chr8 (249-419)||(39497380-39497550)
chr8 (16-83)||(4055609-4055676)
chr8 (33-80)||(12361219-12361266)
chr8 (16-82)||(21653091-21653157)
chr8 (32-79)||(9700027-9700074)
chr8 (16-83)||(14949876-14949943)
chr8 (16-67)||(27028841-27028892)
chr8 (16-82)||(27645914-27645980)
chr8 (16-80)||(5069707-5069771)
chr8 (16-80)||(6509299-6509363)
chr8 (16-80)||(11795102-11795166)
chr8 (20-80)||(20672764-20672824)
chr8 (16-80)||(26473748-26473812)
chr8 (34-82)||(31875589-31875637)
[»] chr2 (16 HSPs)
chr2 (16-82)||(34652030-34652096)
chr2 (16-82)||(9174825-9174892)
chr2 (16-83)||(36852482-36852549)
chr2 (16-82)||(1939326-1939392)
chr2 (16-82)||(5133782-5133848)
chr2 (16-82)||(33942160-33942226)
chr2 (31-83)||(10285885-10285937)
chr2 (26-80)||(5781689-5781743)
chr2 (16-82)||(32821819-32821885)
chr2 (31-80)||(1647261-1647310)
chr2 (41-82)||(1742026-1742067)
chr2 (45-82)||(1893275-1893312)
chr2 (16-77)||(39983352-39983413)
chr2 (13-82)||(41809239-41809308)
chr2 (16-80)||(29316771-29316835)
chr2 (34-82)||(43985237-43985285)
[»] chr6 (12 HSPs)
chr6 (16-82)||(2455820-2455886)
chr6 (16-80)||(6647397-6647461)
chr6 (16-79)||(4420653-4420716)
chr6 (16-82)||(3155186-3155251)
chr6 (16-82)||(25100053-25100119)
chr6 (17-82)||(281842-281907)
chr6 (33-82)||(9667979-9668028)
chr6 (34-82)||(34403883-34403931)
chr6 (33-80)||(8420193-8420240)
chr6 (16-82)||(20368174-20368240)
chr6 (33-82)||(7148693-7148742)
chr6 (34-82)||(6536975-6537023)
[»] chr5 (10 HSPs)
chr5 (16-78)||(36638757-36638819)
chr5 (16-82)||(32172663-32172729)
chr5 (14-58)||(38104875-38104919)
chr5 (16-82)||(12242704-12242770)
chr5 (16-82)||(17368686-17368752)
chr5 (17-82)||(4619718-4619783)
chr5 (34-79)||(5284445-5284490)
chr5 (16-80)||(2568668-2568732)
chr5 (41-77)||(19177023-19177059)
chr5 (15-67)||(26390799-26390851)
[»] chr4 (11 HSPs)
chr4 (26-82)||(28615543-28615599)
chr4 (16-82)||(2996583-2996649)
chr4 (16-82)||(11264311-11264377)
chr4 (33-82)||(6987735-6987784)
chr4 (16-76)||(4798566-4798626)
chr4 (31-82)||(6466040-6466091)
chr4 (26-80)||(29467620-29467674)
chr4 (16-66)||(36048543-36048593)
chr4 (41-82)||(20936223-20936264)
chr4 (41-82)||(22662241-22662282)
chr4 (16-80)||(23819099-23819163)
[»] chr7 (7 HSPs)
chr7 (16-82)||(39771771-39771837)
chr7 (31-82)||(12234883-12234934)
chr7 (16-82)||(529385-529451)
chr7 (41-83)||(3500960-3501002)
chr7 (16-73)||(15075088-15075145)
chr7 (42-83)||(45078314-45078355)
chr7 (16-80)||(21453304-21453368)
[»] chr1 (12 HSPs)
chr1 (33-82)||(6262047-6262096)
chr1 (16-80)||(10199404-10199468)
chr1 (16-80)||(37811862-37811926)
chr1 (16-79)||(35017586-35017649)
chr1 (41-83)||(3597274-3597316)
chr1 (16-82)||(37593678-37593744)
chr1 (16-78)||(47020517-47020579)
chr1 (19-80)||(35925703-35925764)
chr1 (16-77)||(44031998-44032059)
chr1 (41-77)||(3244934-3244970)
chr1 (16-80)||(5591962-5592026)
chr1 (16-76)||(7262518-7262578)
[»] scaffold0159 (1 HSPs)
scaffold0159 (26-80)||(27021-27075)
[»] scaffold0147 (1 HSPs)
scaffold0147 (26-82)||(12698-12754)
[»] scaffold0003 (1 HSPs)
scaffold0003 (16-80)||(306336-306400)


Alignment Details
Target: chr3 (Bit Score: 364; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 419
Target Start/End: Complemental strand, 44374713 - 44374301
Alignment:
Q  8 aaaatttgtttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagttaaacaacctcatacatgcttatgtg 107  Q
    |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  44374713 aaaatttgtttcgtaagatatcttggagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagttaaacaacctcaaacatgcttatgtg 44374614  T
Q  108 tatgttctcgctaaatttagcctttctgcaacaagtgtttcnnnnnnnc-accattgttgcatgatgattatccatacacatactcctttattcagaagt 206  Q
    |||||||||||||||||||||||||||||||||||||||||         ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  44374613 tatgttctcgctaaatttagcctttctgcaacaagtgtttcaaaaaaaataccatcgttgcatgatgattatccatacacatactcctttattcagaagt 44374514  T
Q  207 aaaaatcatgttatataatacaacttttttggttattctatgcagatgcggatatgatcagatttttccagattcttcctaccaccccgtagatggaatg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44374513 aaaaatcatgttatataatacaacttttttggttattctatgcagatgcggatatgatcagatttttccagattcttcctaccaccccgtagatggaatg 44374414  T
Q  307 cttggccttggcaggggcaaatccagcttgatatcacaactgaatggtcagggtttggtgagaaatgtcgttggacactgtttgagtgcacaaggaggag 406  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44374413 cttggccttggcaggggcaaatccagcttgatatcacaactgaatggtcagggtttggtgagaaatgtcgttggacactgtttgagtgcacaaggaggag 44374314  T
Q  407 gatacatcttctt 419  Q
    |||||||||||||    
T  44374313 gatacatcttctt 44374301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 37273144 - 37273210
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||| |||||| |||| || ||||||||||| |||||| | |||||| ||||||||||||||    
T  37273144 tttcataagctatcttggagaacttatggaaataagttgaaaacaacttatggacatgtcataagtt 37273210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 31010422 - 31010478
Alignment:
Q  26 tatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||| ||||||||| |||||| |||| |||||| |||||||| ||||||||||||||    
T  31010422 tatcatagagagcttatggaattaagctgaaaacagcttatggacatgtcataagtt 31010478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 52619013 - 52619076
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataa 79  Q
    ||||| ||| ||||||  ||||||  || ||||||||||||||||||||||| |||||||||||    
T  52619013 tttcacaagctatcttgaagagcttgtgaaaataaggtgaaaatagcttatgaacatgtcataa 52619076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 10357443 - 10357509
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||||||  ||||||||||||| |  |||||||   ||||||||||||| |||||||||||||||    
T  10357443 tttcataagccatcttagagagcttactgaaataactcgaaaatagcttatatacatgtcataagtt 10357509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 1360560 - 1360523
Alignment:
Q  42 tggaaataaggtgaaaatagcttatgtacatgtcataa 79  Q
    |||||||||| ||||||||||||||| |||||||||||    
T  1360560 tggaaataagctgaaaatagcttatggacatgtcataa 1360523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 3044302 - 3044253
Alignment:
Q  33 gagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||| ||| ||||||| |||||| |||||||| ||||||||||||||    
T  3044302 gagagcttatgaaaataagttgaaaacagcttatgaacatgtcataagtt 3044253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 10073263 - 10073210
Alignment:
Q  29 cttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||||| || |||||||  | |||||||||||| |||||||||||||||    
T  10073263 cttagagagcttatagaaataacttaaaaatagcttatatacatgtcataagtt 10073210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 25925769 - 25925818
Alignment:
Q  33 gagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||| ||| ||||||| |||||| |||||||| ||||||||||||||    
T  25925769 gagagcttatgaaaataagttgaaaacagcttatgaacatgtcataagtt 25925818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 38318995 - 38319036
Alignment:
Q  41 atggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||||| ||||||||||||||| |||||| |||||||    
T  38318995 atggaaataagctgaaaatagcttatgaacatgttataagtt 38319036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 36200124 - 36200172
Alignment:
Q  34 agagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||| ||||||||||| |||||| | |||||| ||||||||||||||    
T  36200124 agagctcatggaaataagctgaaaacaacttatggacatgtcataagtt 36200172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 419
Target Start/End: Complemental strand, 39497550 - 39497380
Alignment:
Q  249 cagatgcggatatgatcagatttttccagattcttcctaccaccccgtagatggaatgcttggccttggcaggggcaaatccagcttgatatcacaactg 348  Q
    |||||| |||||||| ||||| ||| ||  |||  | ||||||||  |||||||||| ||||| ||||| ||||| ||  |||||||||||||||| |||    
T  39497550 cagatgtggatatgaccagatattttcaccttcaacttaccaccctttagatggaatacttggtcttggaaggggaaaggccagcttgatatcacagctg 39497451  T
Q  349 aatggtcagggtttggtgagaaatgtcgttggacactgtttgagtgcacaaggaggaggatacatcttctt 419  Q
    ||| | |||||||||||| |||||||  | ||||| ||||| ||  | | ||||||||||||||| |||||    
T  39497450 aatagccagggtttggtgcgaaatgtgatgggacattgtttaagctcgcgaggaggaggatacattttctt 39497380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Complemental strand, 4055676 - 4055609
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtta 83  Q
    ||||||||| ||||| |||||||| | ||||||||| |||||| || ||||| |||||||||||||||    
T  4055676 tttcataagctatctcagagagcttaaggaaataagctgaaaacagtttatggacatgtcataagtta 4055609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 12361219 - 12361266
Alignment:
Q  33 gagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||    
T  12361219 gagagctaatggaaataagttgaaaacagcttatggacatgtcataag 12361266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 21653091 - 21653157
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||| || |||||| ||||||| ||| ||||||| ||||||||||||||| || |||||||||||    
T  21653091 tttcattagctatcttggagagcttatgaaaataagctgaaaatagcttatgaacgtgtcataagtt 21653157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 32 - 79
Target Start/End: Original strand, 9700027 - 9700074
Alignment:
Q  32 agagagctaatggaaataaggtgaaaatagcttatgtacatgtcataa 79  Q
    |||||||| ||| |||||||||||||| |||||||| |||||||||||    
T  9700027 agagagcttatgaaaataaggtgaaaacagcttatggacatgtcataa 9700074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 14949876 - 14949943
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtta 83  Q
    ||||||||| |||| || |||| | || |||||||| |||||| |||||||| |||||||||||||||    
T  14949876 tttcataagctatcctaaagagattatagaaataagctgaaaacagcttatggacatgtcataagtta 14949943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 67
Target Start/End: Original strand, 27028841 - 27028892
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatg 67  Q
    ||||||||| |||||| ||||||| ||| ||||||| |||||||||||||||    
T  27028841 tttcataagctatcttggagagcttatgaaaataagctgaaaatagcttatg 27028892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 27645914 - 27645980
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||| ||||||  ||||||||| || |||||||| ||||||||||||||  | ||||||||||||    
T  27645914 tttcattagatatactagagagcttatagaaataagttgaaaatagcttatagatatgtcataagtt 27645980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 5069707 - 5069771
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    |||||||||||||||| || |||| ||| ||||||| |||||||  |||||| |||||| |||||    
T  5069707 tttcataagatatcttcgaaagcttatgaaaataagctgaaaatgacttatgaacatgttataag 5069771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 6509363 - 6509299
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    ||||||||| |||| | ||||||| || |||||||||||||||||| ||||   |||||||||||    
T  6509363 tttcataagctatcctggagagcttattgaaataaggtgaaaatagtttataggcatgtcataag 6509299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 11795102 - 11795166
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    ||||||||| |||  | ||||||| ||||||||||| |||||| || ||||| ||||||||||||    
T  11795102 tttcataagctattatggagagcttatggaaataagctgaaaacaggttatggacatgtcataag 11795166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 20 - 80
Target Start/End: Original strand, 20672764 - 20672824
Alignment:
Q  20 ataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    ||||| |||| | ||||||| ||| ||||||| |||||| |||||||| ||||||||||||    
T  20672764 ataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataag 20672824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 26473812 - 26473748
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    ||||||||| |||| ||||||||| ||| ||||||| | ||| ||||||||  ||||||||||||    
T  26473812 tttcataagctatcctagagagcttatgaaaataagttaaaactagcttatagacatgtcataag 26473748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 31875637 - 31875589
Alignment:
Q  34 agagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||| ||| ||||||| ||||||| ||||||| ||||||||||||||    
T  31875637 agagcttatgaaaataagttgaaaatggcttatggacatgtcataagtt 31875589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 34652096 - 34652030
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||| |||||| ||||||| ||||||||||| |||||| |||||||| ||||||||||||||    
T  34652096 tttcataagctatcttggagagcttatggaaataagttgaaaacagcttatggacatgtcataagtt 34652030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 9174825 - 9174892
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtac-atgtcataagtt 82  Q
    ||||||||| ||||||| |||||| ||| ||||||| ||||||||||||||| || ||||||||||||    
T  9174825 tttcataagctatcttacagagcttatgaaaataagctgaaaatagcttatgaacaatgtcataagtt 9174892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 36852482 - 36852549
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtta 83  Q
    ||||||||| |||||| ||||||| ||||||||||  ||||||||| ||||  |||||||||||||||    
T  36852482 tttcataagctatcttggagagcttatggaaataatctgaaaatagtttatagacatgtcataagtta 36852549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 1939392 - 1939326
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||| |||  | ||||||| ||||||||||| |||||| |||||||| ||||||||||||||    
T  1939392 tttcataagctatactggagagcttatggaaataagttgaaaacagcttatggacatgtcataagtt 1939326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 5133782 - 5133848
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||| ||| ||||| |||||||| ||||||||||| ||||| |||||||||  |||||||||||||    
T  5133782 tttcaaaagttatctaagagagcttatggaaataagctgaaagtagcttatgaccatgtcataagtt 5133848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 33942160 - 33942226
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||||||  ||| ||||||||||||| |||| || |||||| |||||||| ||||||||||||||    
T  33942160 tttcataagccatcatagagagctaatgaaaattagctgaaaacagcttatgaacatgtcataagtt 33942226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 10285885 - 10285937
Alignment:
Q  31 tagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtta 83  Q
    |||||| || ||||||||||| |||||| |||||||| |||||||||||||||    
T  10285885 tagagaacttatggaaataagttgaaaacagcttatggacatgtcataagtta 10285937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 5781689 - 5781743
Alignment:
Q  26 tatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    |||| ||||||||| ||||||||||| |||||| || ||||| ||||||||||||    
T  5781689 tatcatagagagcttatggaaataagctgaaaacagtttatgcacatgtcataag 5781743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 32821819 - 32821885
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||| |||| || |||||| || |||||||  |||||| |||||||| ||||||||||||||    
T  32821819 tttcataagctatcctaaagagcttatagaaataaactgaaaacagcttatggacatgtcataagtt 32821885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 80
Target Start/End: Original strand, 1647261 - 1647310
Alignment:
Q  31 tagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    ||||||||| ||||||||||| |||||| ||||||||  |||||||||||    
T  1647261 tagagagcttatggaaataagctgaaaacagcttatgagcatgtcataag 1647310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 1742067 - 1742026
Alignment:
Q  41 atggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||||| |||| |||||||||| ||||||||||||||    
T  1742067 atggaaataagttgaagatagcttatgcacatgtcataagtt 1742026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 82
Target Start/End: Complemental strand, 1893312 - 1893275
Alignment:
Q  45 aaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  1893312 aaataagctgaaaataacttatgtacatgtcataagtt 1893275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Original strand, 39983352 - 39983413
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcat 77  Q
    ||||||||| |||| | ||||||||||| ||||||  ||||||||||||||  |||||||||    
T  39983352 tttcataagctatcctggagagctaatgaaaataaactgaaaatagcttatagacatgtcat 39983413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 82
Target Start/End: Complemental strand, 41809308 - 41809239
Alignment:
Q  13 ttgtttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||| | ||| ||||||||| |||| ||||||||||| | |||| | |||||| ||||||||||||||    
T  41809308 ttgttttacaagctatcttagaaagcttatggaaataagctaaaaacaacttatgaacatgtcataagtt 41809239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 29316835 - 29316771
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    |||||| || |||||| |||| || ||||||||||| |||||| | |||||| ||||||||||||    
T  29316835 tttcatcagctatcttggagaacttatggaaataagctgaaaagaacttatgaacatgtcataag 29316771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 43985237 - 43985285
Alignment:
Q  34 agagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||| ||||||| ||| |||||| |||||||| ||||||||||||||    
T  43985237 agagcttatggaaacaagttgaaaaaagcttatggacatgtcataagtt 43985285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 2455820 - 2455886
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||| |||||| ||||||| ||||||||||| ||||||||| |||||  |||||||||||||    
T  2455820 tttcataagctatcttggagagcttatggaaataagttgaaaatagtttatgggcatgtcataagtt 2455886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 6647397 - 6647461
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    ||||||||| |||||||||||||| ||| ||||||| |||||| | |||||| ||||||||||||    
T  6647397 tttcataagctatcttagagagcttatgaaaataagttgaaaacatcttatgaacatgtcataag 6647461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 4420653 - 4420716
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataa 79  Q
    |||| |||| |||||| ||||||| ||||||||||| |||||| |||||||| |||||||||||    
T  4420653 tttcctaagctatcttggagagcttatggaaataagctgaaaacagcttatgaacatgtcataa 4420716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 3155186 - 3155251
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||||||||||| | |||||||| |||||||||| |||||| |||||||  ||||||||||||||    
T  3155186 tttcataagatatcctggagagcta-tggaaataagctgaaaacagcttatagacatgtcataagtt 3155251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 25100053 - 25100119
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||| ||||||| |||||| || |||||||| ||||||||||  ||| ||||||||||||||    
T  25100053 tttcataagctatcttaaagagcttatagaaataagttgaaaatagcaaatgaacatgtcataagtt 25100119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 281907 - 281842
Alignment:
Q  17 ttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||||| |||| ||||||||| ||||||||||| |||||| | |||||  ||||||||||||||    
T  281907 ttcataagctatcctagagagctcatggaaataagctgaaaacaacttatagacatgtcataagtt 281842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 9668028 - 9667979
Alignment:
Q  33 gagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||| ||||||||||| |||||| |||||||| ||||||||||||||    
T  9668028 gagagcttatggaaataagttgaaaacagcttatggacatgtcataagtt 9667979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 34403883 - 34403931
Alignment:
Q  34 agagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||| |||||||||||||||||| | |||||| ||||||||||||||    
T  34403883 agagcttatggaaataaggtgaaaacaccttatgaacatgtcataagtt 34403931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Complemental strand, 8420240 - 8420193
Alignment:
Q  33 gagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    ||||||| ||||||||||| |||||||||||| || ||||||||||||    
T  8420240 gagagcttatggaaataagttgaaaatagcttgtggacatgtcataag 8420193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 20368240 - 20368174
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||| | |||| |||| || ||| ||||||| ||||| ||||||||| ||||||||||||||    
T  20368240 tttcataagctttcttggagaacttatgaaaataagttgaaactagcttatgaacatgtcataagtt 20368174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 7148693 - 7148742
Alignment:
Q  33 gagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||| ||| ||||||| ||||||||||||||| ||| ||||||||||    
T  7148693 gagagcttatgaaaataagttgaaaatagcttatggacaagtcataagtt 7148742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 82
Target Start/End: Original strand, 6536975 - 6537023
Alignment:
Q  34 agagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||| ||||||||||| |||||| | |||||| ||||||||||||||    
T  6536975 agagcttatggaaataagctgaaaacaacttatgaacatgtcataagtt 6537023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 36638757 - 36638819
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcata 78  Q
    ||||||||| |||| ||||||||| ||||||||||| |||||| |||||||| ||||||||||    
T  36638757 tttcataagttatcctagagagcttatggaaataagctgaaaaaagcttatgaacatgtcata 36638819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 32172663 - 32172729
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||| |||| |  ||| |||||||||||||| ||||||| ||||||| ||||||||||||||    
T  32172663 tttcataagctatcatgaagaactaatggaaataagctgaaaatggcttatggacatgtcataagtt 32172729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 58
Target Start/End: Complemental strand, 38104919 - 38104875
Alignment:
Q  14 tgtttcataagatatcttagagagctaatggaaataaggtgaaaa 58  Q
    ||||||||||| |||||||||||||| ||||||||||| ||||||    
T  38104919 tgtttcataagctatcttagagagcttatggaaataagctgaaaa 38104875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 12242770 - 12242704
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||| |||||| ||||||| |||||| |||| |||||| | || |||| |||||||||||||    
T  12242770 tttcataagctatcttggagagcttatggaagtaagctgaaaacaactaatgttcatgtcataagtt 12242704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 17368686 - 17368752
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||| |||||| ||||| | ||||||||||| ||||||  || |||| ||||||||||||||    
T  17368686 tttcataagctatcttggagaggttatggaaataagctgaaaactgcatatgaacatgtcataagtt 17368752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 4619718 - 4619783
Alignment:
Q  17 ttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||||| |||| | |||| || |||||||||||||||||  |||||||| ||||||||| ||||    
T  4619718 ttcataagctatcatggagaacttatggaaataaggtgaaaccagcttatgaacatgtcattagtt 4619783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 5284490 - 5284445
Alignment:
Q  34 agagctaatggaaataaggtgaaaatagcttatgtacatgtcataa 79  Q
    |||||||||| ||||||| |||||| |||||||| |||||||||||    
T  5284490 agagctaatgaaaataagctgaaaaaagcttatggacatgtcataa 5284445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 2568668 - 2568732
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    ||||||||| |||| | ||||||||||| ||||||| | |||||| |||||| | ||||||||||    
T  2568668 tttcataagctatcatggagagctaatgaaaataagctaaaaataacttatgaatatgtcataag 2568732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 19177023 - 19177059
Alignment:
Q  41 atggaaataaggtgaaaatagcttatgtacatgtcat 77  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  19177023 atggaaataaggtaaaaatagcttatggacatgtcat 19177059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 26390851 - 26390799
Alignment:
Q  15 gtttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatg 67  Q
    ||||| |||| |||| | ||||||| |||||||||||||||||| ||||||||    
T  26390851 gtttcctaagttatcctggagagcttatggaaataaggtgaaaacagcttatg 26390799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 28615543 - 28615599
Alignment:
Q  26 tatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||| ||||||| |||||||||||||||||||| || ||| ||||||||||||||    
T  28615543 tatcttggagagcttatggaaataaggtgaaaatatctaatggacatgtcataagtt 28615599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 2996583 - 2996649
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||| |||||| ||||||  ||| ||||||| |||||| |||||||| ||||||||||||||    
T  2996583 tttcataagctatcttggagagcgtatgaaaataagttgaaaaaagcttatggacatgtcataagtt 2996649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 11264311 - 11264377
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||||||  ||| ||||||||| ||||||||||| |||||| || ||||| ||||||||||||||    
T  11264311 tttcataagccatcctagagagcttatggaaataagttgaaaacagtttatggacatgtcataagtt 11264377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 6987784 - 6987735
Alignment:
Q  33 gagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||| ||||||||||| ||||||||| ||||| ||||||||||||||    
T  6987784 gagagcttatggaaataagttgaaaatagtttatggacatgtcataagtt 6987735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 4798626 - 4798566
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtca 76  Q
    ||||||||| |||||| ||||||| ||| ||||||| | |||| |||||||||||||||||    
T  4798626 tttcataagctatcttggagagcttatgcaaataagctcaaaacagcttatgtacatgtca 4798566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 6466091 - 6466040
Alignment:
Q  31 tagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||| | ||||||||||| ||||||||||||||| |||| |||||||||    
T  6466091 tagagagattatggaaataagttgaaaatagcttatgaacatctcataagtt 6466040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Complemental strand, 29467674 - 29467620
Alignment:
Q  26 tatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    |||| ||||||| | ||||||||||| |||||| |||||||| ||||||||||||    
T  29467674 tatcctagagagtttatggaaataagctgaaaacagcttatggacatgtcataag 29467620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 66
Target Start/End: Original strand, 36048543 - 36048593
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttat 66  Q
    ||||| ||| |||||||||||||| ||||||||||| ||| ||||||||||    
T  36048543 tttcaaaagctatcttagagagcttatggaaataagctgacaatagcttat 36048593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 20936264 - 20936223
Alignment:
Q  41 atggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||||||||||||||| |||||||| |||| |||||||||    
T  20936264 atggaaataaggtgaaaacagcttatgaacatatcataagtt 20936223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 41 - 82
Target Start/End: Complemental strand, 22662282 - 22662241
Alignment:
Q  41 atggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||||| ||||||||||||||| |||| |||||||||    
T  22662282 atggaaataagctgaaaatagcttatgaacatatcataagtt 22662241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 23819099 - 23819163
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    ||||||||| ||||||  |||||| || |||||||| |||||| | |||||| ||||||||||||    
T  23819099 tttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataag 23819163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 39771771 - 39771837
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||| | |||| ||||| ||||||||||||||| |||||| |||||||| |||| |||||||||    
T  39771771 tttcataggttatcatagagtgctaatggaaataagttgaaaacagcttatggacatatcataagtt 39771837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 12234934 - 12234883
Alignment:
Q  31 tagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||| ||||||||||| |||||| |||||||  ||||||||||||||    
T  12234934 tagagagcttatggaaataagctgaaaacagcttatagacatgtcataagtt 12234883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 529385 - 529451
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||| |||||| ||||||| ||| ||||| | |||||| |||||||| || |||||||||||    
T  529385 tttcataagctatcttggagagcttatgaaaatatgttgaaaacagcttatgaacttgtcataagtt 529451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 3501002 - 3500960
Alignment:
Q  41 atggaaataaggtgaaaatagcttatgtacatgtcataagtta 83  Q
    ||||||||||| |||||| |||| |||||||||||||||||||    
T  3501002 atggaaataagctgaaaacagctgatgtacatgtcataagtta 3500960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 15075145 - 15075088
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatg 73  Q
    ||||||||  || ||||||||||| ||||||||||| | |||| ||||||||||||||    
T  15075145 tttcataaactaccttagagagcttatggaaataagctaaaaacagcttatgtacatg 15075088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 83
Target Start/End: Original strand, 45078314 - 45078355
Alignment:
Q  42 tggaaataaggtgaaaatagcttatgtacatgtcataagtta 83  Q
    |||||||||| |||||| |||||||| |||||||||||||||    
T  45078314 tggaaataagttgaaaacagcttatggacatgtcataagtta 45078355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 21453304 - 21453368
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    ||||||||| |||| ||||||||||||| | ||||| ||||||| | ||||| | ||||||||||    
T  21453304 tttcataagctatcctagagagctaatgaagataagctgaaaatggtttatggagatgtcataag 21453368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 6262047 - 6262096
Alignment:
Q  33 gagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||||  |||||||||| ||||||||||||||| ||||||||||||||    
T  6262047 gagagcttgtggaaataagttgaaaatagcttatgaacatgtcataagtt 6262096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 10199468 - 10199404
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    ||||||||| ||| |||||||||| ||| ||||||| |||||| | |||||| ||||||||||||    
T  10199468 tttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataag 10199404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 37811862 - 37811926
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    |||||||||  ||| | ||||||||||||||||||| |||||| || ||||| ||||||||||||    
T  37811862 tttcataagccatcatggagagctaatggaaataagttgaaaacagtttatgaacatgtcataag 37811926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 35017586 - 35017649
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataa 79  Q
    ||||||||| | || | ||||||| ||||||||||| |||||||| |||||| |||||||||||    
T  35017586 tttcataagctgtcctggagagcttatggaaataagttgaaaataacttatggacatgtcataa 35017649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 83
Target Start/End: Complemental strand, 3597316 - 3597274
Alignment:
Q  41 atggaaataaggtgaaaatagcttatgtacatgtcataagtta 83  Q
    ||||||||||| |||||||||||||||  ||||||||||||||    
T  3597316 atggaaataagctgaaaatagcttatggccatgtcataagtta 3597274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 37593744 - 37593678
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    ||||||||| ||| ||  |||||| ||| ||||||| |||||| |||||||| ||||||||||||||    
T  37593744 tttcataagctattttgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagtt 37593678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 78
Target Start/End: Original strand, 47020517 - 47020579
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcata 78  Q
    ||||||||| |||||||||||||| | ||||||||| || ||| || ||||| ||||||||||    
T  47020517 tttcataagctatcttagagagcttacggaaataagttgtaaacaggttatggacatgtcata 47020579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 35925703 - 35925764
Alignment:
Q  19 cataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    |||||| |||| | ||||| | ||||||||||| |||||| |||||||| ||||||||||||    
T  35925703 cataagctatcatggagagtttatggaaataagttgaaaacagcttatgaacatgtcataag 35925764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 44032059 - 44031998
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcat 77  Q
    |||| |||| ||||||  |||||| |||||||| || ||||||||||||||| |||||||||    
T  44032059 tttcttaagttatcttgaagagcttatggaaattagctgaaaatagcttatggacatgtcat 44031998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 77
Target Start/End: Original strand, 3244934 - 3244970
Alignment:
Q  41 atggaaataaggtgaaaatagcttatgtacatgtcat 77  Q
    ||||||||||| ||||||||||||||| |||||||||    
T  3244934 atggaaataagttgaaaatagcttatggacatgtcat 3244970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 5592026 - 5591962
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    ||||||||||||||||||| | || ||||||||||  ||||||  ||||||| || |||||||||    
T  5592026 tttcataagatatcttagataacttatggaaataaattgaaaacggcttatgcacgtgtcataag 5591962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 7262578 - 7262518
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtca 76  Q
    ||||||||| |||| |  ||||||  ||||||||||||||||| |||||||| ||||||||    
T  7262578 tttcataagctatcctgaagagcttgtggaaataaggtgaaaacagcttatgaacatgtca 7262518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 26 - 80
Target Start/End: Original strand, 27021 - 27075
Alignment:
Q  26 tatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    |||| ||||||||| ||||||||||| |||||| || ||||| ||||||||||||    
T  27021 tatcatagagagcttatggaaataagctgaaaacagtttatgcacatgtcataag 27075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 12754 - 12698
Alignment:
Q  26 tatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataagtt 82  Q
    |||||||||||||| |||||  |||| |||||| | |||||| ||||||||||||||    
T  12754 tatcttagagagcttatggagctaagctgaaaacaacttatggacatgtcataagtt 12698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 306336 - 306400
Alignment:
Q  16 tttcataagatatcttagagagctaatggaaataaggtgaaaatagcttatgtacatgtcataag 80  Q
    ||||||||| |||| ||||||||| ||| || |||| |||||| ||||||||  |||||||||||    
T  306336 tttcataagctatcctagagagcttatgtaagtaagctgaaaacagcttatgggcatgtcataag 306400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University