View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19829_low_14 (Length: 429)

Name: NF19829_low_14
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19829_low_14
NF19829_low_14
[»] chr3 (8 HSPs)
chr3 (9-415)||(23140269-23140674)
chr3 (192-415)||(23039264-23039487)
chr3 (206-407)||(23148989-23149190)
chr3 (195-415)||(23036393-23036613)
chr3 (193-407)||(23146151-23146365)
chr3 (206-415)||(23024495-23024704)
chr3 (192-405)||(23032932-23033145)
chr3 (212-405)||(23017295-23017488)
[»] chr6 (1 HSPs)
chr6 (212-407)||(21780044-21780239)
[»] scaffold0554 (1 HSPs)
scaffold0554 (215-415)||(6331-6531)
[»] chr1 (3 HSPs)
chr1 (207-359)||(12637277-12637429)
chr1 (224-362)||(12610181-12610319)
chr1 (212-335)||(15885536-15885659)
[»] scaffold0059 (1 HSPs)
scaffold0059 (212-326)||(62465-62579)


Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 9 - 415
Target Start/End: Complemental strand, 23140674 - 23140269
Alignment:
Q  9 attatacttttggtctcttaaattttaaggtttgttcggttttggtcccttaagttacaatataagcactttaatccctttagttgtttcggttctgttt 108  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||| |||||||||| |||    
T  23140674 attacacttttggtctcttaaattttaaggtttgttccgttttggtcccttaagttacaatataagcactttagtcccttaagtt-tttcggttctattt 23140576  T
Q  109 tcctcccttaagttaaaaatattacacaaattgattttttatgttggtcatttaactatgtctaaacatgtattatttacctggaccttagtgatagtta 208  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23140575 tcctcccttaagttaaaaatactacacaaattgattttttatgtcggtcgtttaactatgtctaaacatgtattatttacctggaccttagtgatagtta 23140476  T
Q  209 ttgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataatgaagaaagc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23140475 ttgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataatgaagaaagt 23140376  T
Q  309 gcaagatgaggtgagagagattttcaaaatgaaaggaagggttgatgaaaattgcatcaacgagctccattatttgaaatcaatcatcaaagaaaccttg 408  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23140375 gcaagatgaggtgagagaggttttcaaaatgaaaggaagggttgatgaaaattgcatcaacgagctccattatttgaaatcaatcgtcaaagaaaccttg 23140276  T
Q  409 aggttac 415  Q
    |||||||    
T  23140275 aggttac 23140269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 192 - 415
Target Start/End: Complemental strand, 23039487 - 23039264
Alignment:
Q  192 gaccttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatcca 291  Q
    ||||||| |||||| || | |||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  23039487 gaccttattgatagctacttttcaggacgtttttggtgctggaggtgagacatcagcaagcaccatagactgggcaatggtagaaatgataagggatcca 23039388  T
Q  292 agaataatgaagaaagcgcaagatgaggtgagagagattttcaaaatgaaaggaagggttgatgaaaattgcatcaacgagctccattatttgaaatcaa 391  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |||     
T  23039387 agaataatgaagaaagcgcaagatgaggtgagagaggttttcaaaatgaaaggaagggttgatgaaaattgcatcaatgaactcaattatttgaagtcag 23039288  T
Q  392 tcatcaaagaaaccttgaggttac 415  Q
    |  ||||||||||| |||||||||    
T  23039287 ttgtcaaagaaaccctgaggttac 23039264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 206 - 407
Target Start/End: Complemental strand, 23149190 - 23148989
Alignment:
Q  206 ttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataatgaagaa 305  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||    
T  23149190 ttattgttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcaatggtagagatggtaaaggatccaagaataatgaagaa 23149091  T
Q  306 agcgcaagatgaggtgagagagattttcaaaatgaaaggaagggttgatgaaaattgcatcaacgagctccattatttgaaatcaatcatcaaagaaacc 405  Q
    ||| |||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| || ||| |||||||||||| | |  |||||||||||    
T  23149090 agcacaagatgaggtgagagaggttttcaaaatgaaaggaaaggttgatgaaaattgcatcaatgaactcaattatttgaaattagttgtcaaagaaacc 23148991  T
Q  406 tt 407  Q
    ||    
T  23148990 tt 23148989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 195 - 415
Target Start/End: Complemental strand, 23036613 - 23036393
Alignment:
Q  195 cttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaaga 294  Q
    |||| |||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||    
T  23036613 cttactgatagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaaga 23036514  T
Q  295 ataatgaagaaagcgcaagatgaggtgagagagattttcaaaatgaaaggaagggttgatgaaaattgcatcaacgagctccattatttgaaatcaatca 394  Q
    |||||||||||||| |||| ||||||||||||| |||||||||||||||||||||| || || ||||| |||||||| |||  ||||||||||||| ||     
T  23036513 ataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaagggtcgaagagaattgtatcaacgaactcatttatttgaaatcagtcg 23036414  T
Q  395 tcaaagaaaccttgaggttac 415  Q
    ||||||||||| |||||||||    
T  23036413 tcaaagaaaccctgaggttac 23036393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 193 - 407
Target Start/End: Complemental strand, 23146365 - 23146151
Alignment:
Q  193 accttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaa 292  Q
    |||||| |||||| || | | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||    
T  23146365 accttattgatagctactttacaggacatttttgctgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaattggtaaaggatccaa 23146266  T
Q  293 gaataatgaagaaagcgcaagatgaggtgagagagattttcaaaatgaaaggaagggttgatgaaaattgcatcaacgagctccattatttgaaatcaat 392  Q
    |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||| | |    
T  23146265 gaatcatgaagaaagcacaagatgaggtgagagaggttttcaaaatgaaaggaagggttgatgaaaattgcatcaatgaactcaattatttgaaattagt 23146166  T
Q  393 catcaaagaaacctt 407  Q
      |||||||||||||    
T  23146165 tgtcaaagaaacctt 23146151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 206 - 415
Target Start/End: Complemental strand, 23024704 - 23024495
Alignment:
Q  206 ttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataatgaagaa 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| | |||||||||||||||||||    
T  23024704 ttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaagaatccaagaataatgaagaa 23024605  T
Q  306 agcgcaagatgaggtgagagagattttcaaaatgaaaggaagggttgatgaaaattgcatcaacgagctccattatttgaaatcaatcatcaaagaaacc 405  Q
    ||| |||| ||||||| ||||||||||||| ||||||||||||||||| || ||||| ||||| || ||  ||||||||||||||||  |||||||||||    
T  23024604 agcacaagctgaggtgcgagagattttcaatatgaaaggaagggttgaagagaattgtatcaatgaacttaattatttgaaatcaattgtcaaagaaacc 23024505  T
Q  406 ttgaggttac 415  Q
     |||||||||    
T  23024504 ctgaggttac 23024495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 192 - 405
Target Start/End: Complemental strand, 23033145 - 23032932
Alignment:
Q  192 gaccttagtgatagttattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatcca 291  Q
    ||||||| |||||| || | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||  |||||||||||| |||| |    
T  23033145 gaccttattgatagctacttttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcgatgacagaaatgataagagatcaa 23033046  T
Q  292 agaataatgaagaaagcgcaagatgaggtgagagagattttcaaaatgaaaggaagggttgatgaaaattgcatcaacgagctccattatttgaaatcaa 391  Q
     |||||||||||||||| |||| ||||||||||||| |||||||||||||||||| |||||||||||||| ||||  ||| ||| ||||||||||||||     
T  23033045 cgaataatgaagaaagcacaagctgaggtgagagaggttttcaaaatgaaaggaaaggttgatgaaaattacatccccgatctcaattatttgaaatcag 23032946  T
Q  392 tcatcaaagaaacc 405  Q
    || |||||||||||    
T  23032945 tcgtcaaagaaacc 23032932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 212 - 405
Target Start/End: Complemental strand, 23017488 - 23017295
Alignment:
Q  212 ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataatgaagaaagcgca 311  Q
    ||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||| ||    
T  23017488 ttcaggacattttcggtggtggaggtgagacatcagcaagcaccacagattgggcaatgatagaaatgataaggaatccaagaataatgaagaaagcaca 23017389  T
Q  312 agatgaggtgagagagattttcaaaatgaaaggaagggttgatgaaaattgcatcaacgagctccattatttgaaatcaatcatcaaagaaacc 405  Q
    |||||| ||||| ||  || | |||||||||||| ||||||||||||| ||||| || || |||  |||| |||||||| |  |||||||||||    
T  23017388 agatgaagtgagggatgttataaaaatgaaaggacgggttgatgaaaaatgcataaatgaactcagttatctgaaatcagttgtcaaagaaacc 23017295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 148; Significance: 6e-78; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 212 - 407
Target Start/End: Complemental strand, 21780239 - 21780044
Alignment:
Q  212 ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataatgaagaaagcgca 311  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||    
T  21780239 ttcaggacatgtttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatggtaagggatccaagaataatgaagaaagcaca 21780140  T
Q  312 agatgaggtgagagagattttcaaaatgaaaggaagggttgatgaaaattgcatcaacgagctccattatttgaaatcaatcatcaaagaaacctt 407  Q
    |||||| ||||||||  |||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||| |  |||||||||||||    
T  21780139 agatgaagtgagagaagttttcaaaatgaaaggaagggttgatgaaaattgcatcaatgaactcaattatttgaaatcagttgtcaaagaaacctt 21780044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0554 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 215 - 415
Target Start/End: Original strand, 6331 - 6531
Alignment:
Q  215 aggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataatgaagaaagcgcaaga 314  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| ||||     
T  6331 aggacatttttggtgctggaggtgatacatcagcaaccaccatagattgggcaatggcagaaatgataagggagccaagaataatgatgaaagcacaagc 6430  T
Q  315 tgaggtgagagagattttcaaaatgaaaggaagggttgatgaaaattgcatcaacgagctccattatttgaaatcaatcatcaaagaaaccttgaggtta 414  Q
    ||||||| ||||  |||| | | |||| |||| |||||||||||||| ||| | | | ||| |||||||||||||| || ||||||||||| | ||||||    
T  6431 tgaggtgcgagaagtttttacattgaatggaaaggttgatgaaaattacattagcaaactcaattatttgaaatcagtcgtcaaagaaacccttaggtta 6530  T
Q  415 c 415  Q
    |    
T  6531 c 6531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 207 - 359
Target Start/End: Complemental strand, 12637429 - 12637277
Alignment:
Q  207 tattgttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataatgaagaaa 306  Q
    |||| ||||||||||  |||||||||||||||| |||||| | |  ||||||| ||||||||||| |||  |  |||||||||||||| | |||||||||    
T  12637429 tatttttcaggacatcattggtgctggaggtgaaacatcatccactaccatagtttgggcaatggcagagttagtaagggatccaagagtgatgaagaaa 12637330  T
Q  307 gcgcaagatgaggtgagagagattttcaaaatgaaaggaagggttgatgaaaa 359  Q
    || ||| |||| |||||| | || ||||| | ||||||||  |||| ||||||    
T  12637329 gcacaatatgaagtgagaaaaatattcaacaagaaaggaactgttggtgaaaa 12637277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 224 - 362
Target Start/End: Complemental strand, 12610319 - 12610181
Alignment:
Q  224 ttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataatgaagaaagcgcaagatgaggtgag 323  Q
    |||||||||||||||| ||||||||    || |||| ||||||||||  |||  || ||||||||  |||| | ||||||||||| ||||||||||| ||    
T  12610319 ttggtgctggaggtgatacatcagcttctactatagtttgggcaatgtcagagttggtaagggataaaagagtgatgaagaaagcacaagatgaggtaag 12610220  T
Q  324 agagattttcaaaatgaaaggaagggttgatgaaaattg 362  Q
    ||| || ||||| ||||||||||  ||||| ||||||||    
T  12610219 agatatattcaacatgaaaggaaatgttgaagaaaattg 12610181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 335
Target Start/End: Original strand, 15885536 - 15885659
Alignment:
Q  212 ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataatgaagaaagcgca 311  Q
    |||||||||| |||||||||||||| || |||||    | |||||||| ||||||||||| |||  || ||||||||  |||| | ||||||||||| ||    
T  15885536 ttcaggacatgtttggtgctggaggagatacatcgagtaccaccatagtttgggcaatggcagagttggtaagggatgaaagagtgatgaagaaagcaca 15885635  T
Q  312 agatgaggtgagagagattttcaa 335  Q
    |||||| || ||||| || |||||    
T  15885636 agatgaagtaagagaaatgttcaa 15885659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 212 - 326
Target Start/End: Complemental strand, 62579 - 62465
Alignment:
Q  212 ttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataatgaagaaagcgca 311  Q
    |||||||||| ||||||||||||||||| ||||||||    | | ||| ||||||||||| |||  || |||| ||||||||| | ||||||||||| ||    
T  62579 ttcaggacatgtttggtgctggaggtgatacatcagctttgagcgtagtttgggcaatggcagagttggtaagagatccaagagtgatgaagaaagcaca 62480  T
Q  312 agatgaggtgagaga 326  Q
    |||||| ||||||||    
T  62479 agatgaagtgagaga 62465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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