View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_low_15 (Length: 402)
Name: NF19829_low_15
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_low_15 |
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| [»] scaffold0006 (1 HSPs) |
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| [»] scaffold0182 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 26398382 - 26398744
Alignment:
| Q |
16 |
caaagttatagtaccaaattcatgttttttaatataggggaatcacatgcattgacaatgaggagaacaaaaacgtaccttaaaaagtgaaatactctta |
115 |
Q |
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| T |
26398382 |
caaagtgatagtaccaaattcatgttttttaatacaggggaatcacatgcattgacaaagaggagagcaaaaacgtaccttaaaaagtgaaatactctta |
26398481 |
T |
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| Q |
116 |
ctcttttgttggaattgtgagagaaaaacaccaagaagtgacagagtggtggtgcttatcctttggggacttgaggactttctgcgtgaaacaatggcag |
215 |
Q |
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| T |
26398482 |
ctcttttgttggaattgtgagagaaaaacaccaagaagtgacagagtggtggtgcttatcctttgg--------ggactttctgcatgaaacagtggcag |
26398573 |
T |
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| Q |
216 |
aatggcagagcttctgatagttgaaacaacgatgtgtgagataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccattnn |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26398574 |
aatggcagagcttctgatagttgaaacaacgatgtgtgagataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccatt-a |
26398672 |
T |
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| Q |
316 |
nnnnnnnnnnnncaattaaatgtgttgattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
387 |
Q |
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| T |
26398673 |
aaaaaaaaaaaacaattaaatgtgttgattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
26398744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 277777 - 278140
Alignment:
| Q |
16 |
caaagttatagtaccaaattcatgttttttaatataggggaatcacatgcattgacaatgaggagaacaaaaacgtaccttaaaaagtgaaatactctta |
115 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||| |
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| T |
277777 |
caaagtgatagtaccaaattcatgttttttaatacaggggaatcacatgcattgacaatgaggagatcaaaattgtatcttaaaaagtgaaatactctta |
277876 |
T |
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| Q |
116 |
ctcttttgttggaattgtgagagaaaaacaccaagaagtgacagagtggtggtgcttatcctttggggacttgaggactttctgcgtgaaacaatggcag |
215 |
Q |
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| T |
277877 |
ctcttttgttggaattgtgagagaaaaacaccaagaagtgacagagtggtggtgcttatcctttgg--------ggactttctgcatgaaacaatggcag |
277968 |
T |
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| Q |
216 |
aatggcagagcttctgatagttgaaacaacgatgtgtgagataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccattnn |
315 |
Q |
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| T |
277969 |
aatggtagagcttctgatagttgaaacaacgatgtgtgagataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccattaa |
278068 |
T |
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| Q |
316 |
nnnnnnnnnnnncaattaaatgtgttgattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
387 |
Q |
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| T |
278069 |
aaaaaataaaaacaattaaatgtgttgattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
278140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0182 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: scaffold0182
Description:
Target: scaffold0182; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 387
Target Start/End: Original strand, 30667 - 31029
Alignment:
| Q |
16 |
caaagttatagtaccaaattcatgttttttaatataggggaatcacatgcattgacaatgaggagaacaaaaacgtaccttaaaaagtgaaatactctta |
115 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30667 |
caaagtgatagtaccaaattcatgttttttaatacaggggaatcacatgcattgacaatgaggagaacaaaagtgtaccttaaaaagtgaaatactctta |
30766 |
T |
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| Q |
116 |
ctcttttgttggaattgtgagagaaaaacaccaagaagtgacagagtggtggtgcttatcctttggggacttgaggactttctgcgtgaaacaatggcag |
215 |
Q |
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| T |
30767 |
ctcttttgttggaattgtgagagaaaaacaccaagaagtgacagagtggtggtgcttatcctttgg--------ggactttctgcatgaaacagtggcag |
30858 |
T |
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| Q |
216 |
aatggcagagcttctgatagttgaaacaacgatgtgtgagataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccattnn |
315 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30859 |
aatggcagagcttctgatagttgaaacaacgatgtgctcgataaggaaagagatattcttaggcgcgggaaaatgccttgttgtttgggatatccatt-a |
30957 |
T |
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| Q |
316 |
nnnnnnnnnnnncaattaaatgtgttgattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
387 |
Q |
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| T |
30958 |
aaaaaataaaaacaattaaacgtgttgattttggtgaaccggtaaccaagtcaaaagttaaaagaatagtat |
31029 |
T |
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