View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_low_18 (Length: 372)
Name: NF19829_low_18
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_low_18 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 39 - 372
Target Start/End: Complemental strand, 1106 - 776
Alignment:
| Q |
39 |
aaacccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatggaagga |
138 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1106 |
aaacccaaataaatccaagcaattgtcggcgaaataaccatcaatgctaaaattgaaacaacacttccaagtaaaagaattaccatcatgaatgggagga |
1007 |
T |
|
| Q |
139 |
aactattgatgtgaagctgcaccaaagctaggtagtaaagaaaaatcgcaaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgc |
238 |
Q |
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| T |
1006 |
aactattgatgtgaagctgcaccaaagctaggtagtaaagaaaaatggcaaaaaccaaagccatca---gtagagattttcggttgcttgtattcattgc |
910 |
T |
|
| Q |
239 |
tgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaataaataaaatattagaag |
338 |
Q |
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| T |
909 |
tgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctagaaagggttgaataaataaaatattagaag |
810 |
T |
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| Q |
339 |
aaacagagtaagttaatgttcgagtagtgattga |
372 |
Q |
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|||||||||||||||||||| ||||||||||||| |
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| T |
809 |
aaacagagtaagttaatgtttgagtagtgattga |
776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 6242926 - 6242601
Alignment:
| Q |
1 |
gattcttatagaacatcaaagcaaagattaagaaccagaaacccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaac |
100 |
Q |
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| T |
6242926 |
gattcttatagaacatcaaagcaaagattaagatccacaaacccaaataaatccaagcaattgtcggcgaaat----------gctaaaattgaaataac |
6242837 |
T |
|
| Q |
101 |
acttccaagtaaaagaattaccatcatgaatggaaggaaactattgatgtgaagctg---------------caccaaagctaggtagtaaagaaaaatc |
185 |
Q |
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| T |
6242836 |
acttccaagtaaaagaattaccatcatgtatggaaggaaactattgatgtgaagctgtaacattgtcacaagcaccaaagctaggtagtaaagaaaaata |
6242737 |
T |
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| Q |
186 |
gcaaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaata |
285 |
Q |
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| T |
6242736 |
gcgaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaatagcttgaaaaattggccaaata |
6242637 |
T |
|
| Q |
286 |
attctccaacttcattcaatctagaaagggttgaat |
321 |
Q |
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| T |
6242636 |
attctccaacttcattcaatctagaaagggttgaat |
6242601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 2 - 325
Target Start/End: Original strand, 6346339 - 6346677
Alignment:
| Q |
2 |
attcttatagaacatcaaagcaaagattaagaaccagaaacccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaaca |
101 |
Q |
| |
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||||| |||| ||||||||||||||| ||||| ||| || |||||| ||||||||||||| || || ||||| | |||||| |||| || |||||||||| |
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| T |
6346339 |
attctcatagcacatcaaagcaaagagtaagatccacaagcccaaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaaca |
6346438 |
T |
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| Q |
102 |
cttccaagtaaaagaattaccatcatgaatggaaggaaactattgatgtgaagct---------------gcaccaaagctaggtagtaaagaaaaatcg |
186 |
Q |
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| T |
6346439 |
cttccaagtaaaacaataaccatcatgaatggaaggaagttcttgatgtgaagctgtagcattgtcacaagcaccaaaaccaagtagtaaagagcaacca |
6346538 |
T |
|
| Q |
187 |
caaaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataa |
286 |
Q |
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|||||||||||||||| ||| | |||||| || | ||||||||| ||| ||||||||| | ||||| |||||| ||| |||||||||| |||| |
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| T |
6346539 |
tgaaaaccaaagccatcagaagtggtgatttttcgatacttgtattcgttgttgcaaacccaattattgcgaacaatagctcaaaaaattggcttaatag |
6346638 |
T |
|
| Q |
287 |
ttctccaacttcattcaatctagaaagggttgaataaat |
325 |
Q |
| |
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|| ||||||||||||||| |||||||||||||||||||| |
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| T |
6346639 |
ttttccaacttcattcaagctagaaagggttgaataaat |
6346677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 6325747 - 6325896
Alignment:
| Q |
4 |
tcttatagaacatcaaagcaaagattaagaaccagaaacccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaacact |
103 |
Q |
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|||||||| |||||||||||||||| |||| ||| ||||||||||||||||| ||||| ||||||||||||||||| || |||||||||||||||||||| |
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| T |
6325747 |
tcttatagcacatcaaagcaaagataaagatccaaaaacccaaataaatccatgcaattgtcggcgaaataaccattaaagctaaaattgaaacaacact |
6325846 |
T |
|
| Q |
104 |
tccaagtaaaagaattaccatcatgaatggaaggaaactattgatgtgaa |
153 |
Q |
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||||||||||||||| | |||| || | |||| ||| || |||||||||| |
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| T |
6325847 |
tccaagtaaaagaatgatcatcttggaaggaatgaatctcttgatgtgaa |
6325896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 4 - 153
Target Start/End: Original strand, 6333224 - 6333373
Alignment:
| Q |
4 |
tcttatagaacatcaaagcaaagattaagaaccagaaacccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaacact |
103 |
Q |
| |
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|||||||| |||||||||||||||| |||| | | ||||||||||||||||||||||| || || ||||| | |||||| ||||||| |||||||||||| |
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| T |
6333224 |
tcttatagcacatcaaagcaaagatgaagatcaacaaacccaaataaatccaagcaattgtaggagaaattatcatcaaagctaaaactgaaacaacact |
6333323 |
T |
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| Q |
104 |
tccaagtaaaagaattaccatcatgaatggaaggaaactattgatgtgaa |
153 |
Q |
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||||||||||||||| | |||| || | |||| |||||| |||||||||| |
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| T |
6333324 |
tccaagtaaaagaatgatcatcttggaaggaaagaaactcttgatgtgaa |
6333373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 6219772 - 6219620
Alignment:
| Q |
1 |
gattcttatagaacatcaaagcaaagattaagaaccagaaacccaaataaatccaagcaatagtcggcgaaataaccatcaatgctaaaattgaaacaac |
100 |
Q |
| |
|
|||||| |||| ||||||||| ||||| ||||| ||| || | |||| ||||||||||||| || || ||||| | |||||| |||| || ||||||||| |
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| T |
6219772 |
gattctcatagcacatcaaagaaaagagtaagatccacaagcacaaaaaaatccaagcaattgtaggagaaatcatcatcaaagctagaactgaaacaac |
6219673 |
T |
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| Q |
101 |
acttccaagtaaaagaattaccatcatgaatggaaggaaactattgatgtgaa |
153 |
Q |
| |
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|||||||||||||| ||| |||||||||||||||||||| || |||||||||| |
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| T |
6219672 |
acttccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaa |
6219620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 321
Target Start/End: Original strand, 6325984 - 6326094
Alignment:
| Q |
211 |
gagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctaga |
310 |
Q |
| |
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|||| ||||| || ||||| |||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
6325984 |
gagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctaga |
6326083 |
T |
|
| Q |
311 |
aagggttgaat |
321 |
Q |
| |
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|| |||||||| |
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|
| T |
6326084 |
aatggttgaat |
6326094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 321
Target Start/End: Original strand, 6333461 - 6333571
Alignment:
| Q |
211 |
gagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaacttcattcaatctaga |
310 |
Q |
| |
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|||| ||||| || ||||| |||||| |||||||||| ||||||||||||| ||| |||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
6333461 |
gagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataattttcccacttctttcaatctaga |
6333560 |
T |
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| Q |
311 |
aagggttgaat |
321 |
Q |
| |
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|| |||||||| |
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| T |
6333561 |
aatggttgaat |
6333571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 372
Target Start/End: Original strand, 6326201 - 6326235
Alignment:
| Q |
338 |
gaaacagagtaagttaatgttcgagtagtgattga |
372 |
Q |
| |
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||||||||||||||||||||| ||||||||||||| |
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|
| T |
6326201 |
gaaacagagtaagttaatgtttgagtagtgattga |
6326235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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