View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_low_19 (Length: 372)
Name: NF19829_low_19
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 327
Target Start/End: Complemental strand, 1545244 - 1544917
Alignment:
| Q |
1 |
catcaaatttttcactaaattgaatcgattacatattttgttacttatttgacaagaaattaaacttaggttttgatctagattttatcaagttaacagc |
100 |
Q |
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| T |
1545244 |
catcacatttttcactaaattgaatcgattacatattttgttacttatttgacaagaaattaaacttaggttttgatctagattttatcaagttaacagc |
1545145 |
T |
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| Q |
101 |
ttattataagcgattatcatattttatcttatgttgcaataatatgaat-atcaaattgagtgattatctcaatccttcaatttgatttaatcattatac |
199 |
Q |
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| T |
1545144 |
ttattataagtgattatcatattttatcttatgttgcaataatatgaataatcaaattgagtgattatctcaatccttcaatttgatttaatcattatac |
1545045 |
T |
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| Q |
200 |
catatttaattaggtatttgtaacttgcatacatcttcatatcggttacatgctttcacgactccgctannnnnnnnaactctctatagggtgtccaata |
299 |
Q |
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| T |
1545044 |
catatttaattaggtatttgtaacttgcatacatcttcatatcggttacatgctttcacgactccgctattttttttaactctctatagggtgtccaata |
1544945 |
T |
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| Q |
300 |
agcgtattcccgcgctttcacgagtccg |
327 |
Q |
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| T |
1544944 |
agcgtattcccgcgctttcacgagtccg |
1544917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 1555835 - 1555767
Alignment:
| Q |
180 |
atttgatttaatcattataccatatttaattaggtatttgtaacttgcatacatcttcatatcggttac |
248 |
Q |
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| T |
1555835 |
atttgatttaatcattagactatatttaattaggtatatgtgacttgcatagatcttcatattggttac |
1555767 |
T |
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