View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19829_low_2 (Length: 632)

Name: NF19829_low_2
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19829_low_2
NF19829_low_2
[»] chr4 (3 HSPs)
chr4 (36-537)||(36606145-36606650)
chr4 (581-618)||(36606659-36606696)
chr4 (54-104)||(9410288-9410340)
[»] chr1 (2 HSPs)
chr1 (479-537)||(2713763-2713821)
chr1 (46-104)||(20158973-20159031)
[»] chr2 (2 HSPs)
chr2 (46-100)||(45161391-45161445)
chr2 (50-99)||(36795152-36795201)
[»] chr6 (1 HSPs)
chr6 (54-99)||(3370232-3370277)
[»] chr7 (2 HSPs)
chr7 (52-100)||(42509048-42509097)
chr7 (52-99)||(31750718-31750766)
[»] chr5 (1 HSPs)
chr5 (51-102)||(33750915-33750967)


Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 36 - 537
Target Start/End: Original strand, 36606145 - 36606650
Alignment:
Q  36 gttcacaaggaaaacaaagggttaatagtgttttacctgtgtaatatagagcatttttggttttgtcccttgtgatataaggttcattaaactttttcag 135  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||| ||  ||||| |||||||||||||||||||     
T  36606145 gttcacaaggaaaacaaagggttaatagtgttttatccgtgtaatataaagcatttttggttttgtcccctgcaatatagggttcattaaactttttcac 36606244  T
Q  136 aaaccgagtacacacattcattgtgttcatgttcttgtttcttcacaaactgaaaccttcataccacaatcccaaaattcatgnnnnnnnntccaacaga 235  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||    
T  36606245 aaacccagtacacacattaattgtgttcatgttcttgtttcttcacaaactcaaaccttcataccacaatcccaaaattcatgaaaaaaaatccaacaga 36606344  T
Q  236 attctttgacaaataatattat----aatcatcaacaacaacacaattgtttaacagttaattacaatccattaaaattcttcaaatctagaatcgactt 331  Q
     |||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36606345 gttctttgacaaataatattatttataatcatcaacaacaacacaattgtttaacagttaattacaatccattaaaattcttcaaatctagaatcgactt 36606444  T
Q  332 acccactttatcttcatcttcccaaactggnnnnnnntcgtagaagaaaatttatcaaacttagttccgactaactcagtaactcagcttcatgttcaaa 431  Q
    ||||| ||||||||||||||||||||||||       |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||    
T  36606445 acccaatttatcttcatcttcccaaactggaaaaaaatcgtagaagaaaatttatcaaacttagttctgactcactcagtaactcagcttcatgttcaaa 36606544  T
Q  432 accaaccgtcggagctgacgaacaaaaaggtaacgacaactttggtttggctgttgttgattctattgaacgtgcgaggtttaaaacagaaaagctaatt 531  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  36606545 accaaccgtcggagctgacgaacaaaaaggtaacgacaaccttggtttggttgttgttgattctattgaacgtgcgaggtttaaaacagaaaagctaatt 36606644  T
Q  532 aatcat 537  Q
    ||||||    
T  36606645 aatcat 36606650  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 581 - 618
Target Start/End: Original strand, 36606659 - 36606696
Alignment:
Q  581 ggttaatttgggtagtgttgttattatttctctctgtg 618  Q
    ||||||||||||||||||||||||||||||||||||||    
T  36606659 ggttaatttgggtagtgttgttattatttctctctgtg 36606696  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 9410340 - 9410288
Alignment:
Q  54 gggttaatagtgttttacc--tgtgtaatatagagcatttttggttttgtccc 104  Q
    |||||||||||||||||||  | |||||||||| ||| |||||||||||||||    
T  9410340 gggttaatagtgttttacccctctgtaatatagggcacttttggttttgtccc 9410288  T

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Target: chr1 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 479 - 537
Target Start/End: Original strand, 2713763 - 2713821
Alignment:
Q  479 tggctgttgttgattctattgaacgtgcgaggtttaaaacagaaaagctaattaatcat 537  Q
    |||||||||||||||||||||||  ||||||||| ||||||| ||| ||||||||||||    
T  2713763 tggctgttgttgattctattgaaattgcgaggttgaaaacaggaaaactaattaatcat 2713821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 20159031 - 20158973
Alignment:
Q  46 aaaacaaagggttaatagtgttttacctgtgtaatatagagcatttttggttttgtccc 104  Q
    |||| ||||||||||||||||||||||  ||||||||||  |||||| |||||| ||||    
T  20159031 aaaataaagggttaatagtgttttacccctgtaatataggtcattttcggttttatccc 20158973  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 45161445 - 45161391
Alignment:
Q  46 aaaacaaagggttaatagtgttttacctgtgtaatatagagcatttttggttttg 100  Q
    |||| ||||||||||||||||||||||  |||||||||| ||| |||||||||||    
T  45161445 aaaataaagggttaatagtgttttacccctgtaatatagggcacttttggttttg 45161391  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 36795152 - 36795201
Alignment:
Q  50 caaagggttaatagtgttttacctgtgtaatatagagcatttttggtttt 99  Q
    |||||||||||||||||||||||  ||||||||||  |||||| ||||||    
T  36795152 caaagggttaatagtgttttacccctgtaatataggtcattttcggtttt 36795201  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 3370277 - 3370232
Alignment:
Q  54 gggttaatagtgttttacctgtgtaatatagagcatttttggtttt 99  Q
    ||||||| |||||||||||| |||||||||||||||||||| ||||    
T  3370277 gggttaacagtgttttacctttgtaatatagagcatttttgatttt 3370232  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 100
Target Start/End: Complemental strand, 42509097 - 42509048
Alignment:
Q  52 aagggttaatagtgtttta-cctgtgtaatatagagcatttttggttttg 100  Q
    ||||||||||||||||||| ||| |||||||||| ||| |||||||||||    
T  42509097 aagggttaatagtgttttaccctctgtaatatagggcacttttggttttg 42509048  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 31750718 - 31750766
Alignment:
Q  52 aagggttaatagtgtttta-cctgtgtaatatagagcatttttggtttt 99  Q
    ||||||||||||||||||| ||| ||||||||||| |||||| ||||||    
T  31750718 aagggttaatagtgttttaccctttgtaatatagatcattttcggtttt 31750766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 51 - 102
Target Start/End: Original strand, 33750915 - 33750967
Alignment:
Q  51 aaagggttaatagtgtttt-acctgtgtaatatagagcatttttggttttgtc 102  Q
    ||||||||||||||||||| |||  |||||||||||||| ||||| |||||||    
T  33750915 aaagggttaatagtgttttaacccttgtaatatagagcacttttgattttgtc 33750967  T

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