View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_low_24 (Length: 330)
Name: NF19829_low_24
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 38714039 - 38714340
Alignment:
| Q |
19 |
caactggtaattaaagtttgaaattaagataatataaaaataccctcaattgattacatttggaaaatcctatacgtctaacttcataatgttctactgt |
118 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
38714039 |
caactggtaattaaagtttgaacttaagataatataaaaatgccctcaattgattacatttggaaaatcctatacgtctaacttcataatgttctattgt |
38714138 |
T |
|
| Q |
119 |
cctatgactatatatctatgctnnnnnnnnnnnnnnnnnnnntcatattgtcaaactagatgtaaattccaaatcgtactcaagtatatgtgtttgtttt |
218 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38714139 |
cctatgactatatatctatgctaaaaaacaaaaacaaaaaaatcatattgtcaaactagatgtaaattccaaatcgtactcaagtatatgtgtttgtttt |
38714238 |
T |
|
| Q |
219 |
tgtttgttattttgggattaagggaatggtgaaatacttaagtcatgatcaattcccatttctccatgaagtggttacagaaattcatgcttaggtccta |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38714239 |
tgtttgttattttgggattaagggaatggtgaaatacttaagtcatgatcaattcccatttctccatgaagtggttacagaaattcatgcttaggtccta |
38714338 |
T |
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| Q |
319 |
tg |
320 |
Q |
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|| |
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| T |
38714339 |
tg |
38714340 |
T |
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