View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_low_27 (Length: 315)
Name: NF19829_low_27
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_low_27 |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: scaffold0074 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 46534 - 46833
Alignment:
| Q |
1 |
aataattagttggatcagatagacacnnnnnnncttgatcactaaaggagtggtttcagaagacttatgggaccaattgaaaactttcaagagttatgag |
100 |
Q |
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| T |
46534 |
aataattagttggatcagatagacacaaaaaaacttgatcactaaaggagtggtttcagaagacttacgggaccaattgaaaactttcaagagttatgag |
46633 |
T |
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| Q |
101 |
accaaattgagaaagagaaataggttaagggacttaccgatgaattaagcctaaaaaatatatatcatttaactaaagctcaatctgttaactggctaga |
200 |
Q |
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| T |
46634 |
accaaattgagaaagagaaataggttaagggacttaccgatgaattaagcctaaaaaatatatatcatttaactaaagctcaatctgttaaccggctaga |
46733 |
T |
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| Q |
201 |
tgggcgtcgtagtcgcgtgcgatatattatttttgtgagtggtcaatccgttcacaaaaagtgcgcacaacagcatccttaccgatgggtttgatatatc |
300 |
Q |
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| T |
46734 |
tgggcgtcgtagtcgcgtgcgatatattatttttgtgagtggtcaatccgttcacaaaaagtgcgcacaacagcatccttaccgatgggtttgatatatc |
46833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 4045 - 4349
Alignment:
| Q |
1 |
aataattagttggatcagatagacacnnnnnnncttgatcactaaaggagtggtttcagaagacttatgggaccaattgaaaactttcaagagttatgag |
100 |
Q |
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| T |
4045 |
aataattagttggatcggatagacacgaaaaaacttgatcactaaaggagtggtttcagaagacttacgggaccgattagaaactttcaagagttatgag |
4144 |
T |
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| Q |
101 |
accaaattgagaaagagaaataggttaagggacttaccgatgaattaagcctaaaaaatatatatcattt------aactaaagctcaatctgttaactg |
194 |
Q |
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| T |
4145 |
accaaattgagaaagagaaataggttaagggacttaccgatgaattaagactaaaaaatatatatcatttagctcaagctcaagctcaatccgttaaccg |
4244 |
T |
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| Q |
195 |
gctagatgggcgtcgtagtcgcgtgcgatatattatttttgtgagtggtcaatccgttcacaaaaagtgcgcacaacagcatccttaccgatgggtttga |
294 |
Q |
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| T |
4245 |
gctagatgggcgtcgtagtcgcatgtgatatattattttcgtgagtggtcaatctgttcac-agaagtgggcacaacggcatccttaccaatgtgtttga |
4343 |
T |
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| Q |
295 |
tatatc |
300 |
Q |
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|||||| |
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| T |
4344 |
tatatc |
4349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 156
Target Start/End: Complemental strand, 19008988 - 19008926
Alignment:
| Q |
94 |
ttatgagaccaaattgagaaagagaaataggttaagggacttaccgatgaattaagcctaaaa |
156 |
Q |
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| T |
19008988 |
ttatgggaccaaattgaaaaaaagaaataagttaagggaccgacagatcaattaagcctaaaa |
19008926 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 161
Target Start/End: Original strand, 3538619 - 3538691
Alignment:
| Q |
89 |
aagagttatgagaccaaattgagaaagagaaataggttaagggacttaccgatgaattaagcctaaaaaatat |
161 |
Q |
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| T |
3538619 |
aagacttatgagaccaaattgaataaaagaaataagttaagggaccggcggatcaattaagccaaaaaaatat |
3538691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 7011695 - 7011627
Alignment:
| Q |
89 |
aagagttatgagaccaaattgagaaagagaaataggttaagggacttaccgatgaattaagcctaaaaa |
157 |
Q |
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| T |
7011695 |
aagacttatgagatcaaattgaataaaagaaataagttaagggactgacagatcaattaagccttaaaa |
7011627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 157
Target Start/End: Complemental strand, 7027053 - 7026985
Alignment:
| Q |
89 |
aagagttatgagaccaaattgagaaagagaaataggttaagggacttaccgatgaattaagcctaaaaa |
157 |
Q |
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| T |
7027053 |
aagacttatgagatcaaattgaataaaagaaataagttaagggactgacagatcaattaagccttaaaa |
7026985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 19217689 - 19217617
Alignment:
| Q |
89 |
aagagttatgagaccaaattgagaaagagaaataggttaagggacttaccgatgaattaagcctaaaaaatat |
161 |
Q |
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| T |
19217689 |
aagacttatgggaccaaattgaataaaagaaataagttaagggaccggcagatcaattaagcctaaaaaatat |
19217617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 22621929 - 22621864
Alignment:
| Q |
89 |
aagagttatgagaccaaattgagaaagagaaataggttaagggacttaccgatgaattaagcctaa |
154 |
Q |
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|||| ||||||||||||||||| || ||||||| ||||||||||| | ||| |||||||||||| |
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| T |
22621929 |
aagacttatgagaccaaattgaataaaagaaataagttaagggactggcagatcaattaagcctaa |
22621864 |
T |
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