View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_low_3 (Length: 627)
Name: NF19829_low_3
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 482; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 19 - 611
Target Start/End: Complemental strand, 7420496 - 7419906
Alignment:
| Q |
19 |
atgaattaaaaaattgattggttattcaaattttctttggatatattaaacaccagagaatggaaattgattggtttcatttgatgtgagacgtgaagtt |
118 |
Q |
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| T |
7420496 |
atgaattaaaaaattgattggttattcaaattttctttcgatatattaaacaccagagaatggaaattgattggtttcatttgatgtgagacgtgaagtt |
7420397 |
T |
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| Q |
119 |
gtttttacaacgctcataacctgagacatggatgatagttttgatcttagattgatcctaggacatttggtgatcttatttatttaattaattaatggtt |
218 |
Q |
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| T |
7420396 |
ttttttacaacgctcataacctgagacatggatgatagttttgatcttagattgatcctaggacatttggtgatcttatttatttaattaat----ggtt |
7420301 |
T |
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| Q |
219 |
caannnnnnnnnnnnatctcatatttggaaacaattattttccacgtgcaaaattttgttaaattagtgtgaataaatcatagactaaactctttattct |
318 |
Q |
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| T |
7420300 |
caaatttttttttttatctcatatttggaaacaattattttccacgtgcaaaattttgttaaattagtgtgaataaatcatagactaaactgtttattct |
7420201 |
T |
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| Q |
319 |
tggatcagtattgcttggtcttgaatatcctatcgtagcgaggaagaatgacttccttcatatcgaaaaggagaaccagaatgcttttattttttaacct |
418 |
Q |
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| T |
7420200 |
tggatcagtattgcttggtcttgaatatcctatcatagcgaggaagaatgacttccttcatatagaaaaggagaaccagaatgcttttattttttaacct |
7420101 |
T |
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| Q |
419 |
tggtgattgaggagcttgatgttgtagaagaattttatgagtctacggtaatt--tataattaaaacnnnnnnncaattagaggaataaataactaatcg |
516 |
Q |
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| T |
7420100 |
tggtgattgaggagcttgatgtcgtagaagaattttatgagtctacagtaatttatataattaaaactttttttcaattagaggaataaataactaatcg |
7420001 |
T |
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| Q |
517 |
tgtttcttattttcacccaagagctcgattgatgtgattcttaggatttgtattgtaaacaaagtggataccaactgcgcacgtcctctaaaaaa |
611 |
Q |
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| T |
7420000 |
tgtttcttattttcacccaagagctcgattgatgtgattcttaggatttgtattgtaaacaaagtggataccaactgcgcacgtcctctaaaaaa |
7419906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 7501161 - 7501088
Alignment:
| Q |
19 |
atgaattaaaaaattgattggttattcaaattttctttggatatattaaacaccagagaatggaaattgattgg |
92 |
Q |
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||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||| |
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| T |
7501161 |
atgaattaaaaaaattattggttattcaaattttctttgcatatattaaacaccagaaaatggtaatttattgg |
7501088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 7428168 - 7428120
Alignment:
| Q |
27 |
aaaaattgattggttattcaaattttctttggatatattaaacaccaga |
75 |
Q |
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| T |
7428168 |
aaaaattgattggtctttgaaattttctttgaatatattaaactccaga |
7428120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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