View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_low_30 (Length: 304)
Name: NF19829_low_30
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_low_30 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 5 - 287
Target Start/End: Complemental strand, 35936436 - 35936135
Alignment:
| Q |
5 |
gatgtcgaag-aatatactaattgtgatttggcacaaaaatgcaataaaagttttagttgtgataatatccactatgtgcaaccacttttgttggtctcc |
103 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35936436 |
gatgtcgaaggaatatactaattgtgatttggcacaaaaatgcaaaaaaagttttagttgtgataatatccactatgtgcaaccacttttgttggtctcc |
35936337 |
T |
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| Q |
104 |
atcacgtacaa-----------------ccctttgtgaatc-atgctgcctaaaaactcaacctcgctgctcatgcatgttctacttcaaataatcactc |
185 |
Q |
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||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35936336 |
atcacgtacaagcctcatgcacgtacaaccctttgtgaatccatgctgcctaaaaactcaacctcgctgctcatgcatgttctacttcaaataatcactc |
35936237 |
T |
|
| Q |
186 |
aagaaccaaactcataagttcactagtcaattggacggtttactattcatgtagattccgcgataaaatcgattgtaatattctaaagaggtgtgttatt |
285 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||| |
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| T |
35936236 |
aagaaccaaactcataagttccctagtcaattggacggtttactattcatgtagattgcgcgataaaatcgattgtaatttttcaaagaggtgtgttatt |
35936137 |
T |
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| Q |
286 |
tg |
287 |
Q |
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|| |
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| T |
35936136 |
tg |
35936135 |
T |
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