View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_low_32 (Length: 290)
Name: NF19829_low_32
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_low_32 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 2402363 - 2402652
Alignment:
| Q |
1 |
atatagaattttaaatctcaacagatctgtcaaagacatcatcaattgctttatctgtctccaaatgtacaaccttcaatgaattaagaatcgaaggaac |
100 |
Q |
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| T |
2402363 |
atatagaatttgaaatctcaacagttctgtcaaagacatcatcaattgctttatctgtctccaaatgtacaaccttcaatgaattaagaatcgaaggaac |
2402462 |
T |
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| Q |
101 |
aactgctcttacttgctcaaactgacgcatctgggtagagataaggactgaaaatgaaaaaataggtatgtatgaaaacatccaaggaatgtggcgtcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2402463 |
aactgctcttacttgctcaaactgacgcatctgggtagagataaggactgaaaatgaaaaaataggtatgtatgaaaacatccaaggaatgtggcgtcaa |
2402562 |
T |
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| Q |
201 |
ctcattgaaagtgcaagacaaaacttctcagcccaaaactagcattttggttttgtatttcatcaacagagatgccttcaacttgaacct |
290 |
Q |
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| T |
2402563 |
ctcattgaaagtgcaagacaaaacttctcagcccaaaactagcattttggttttgtatttcatcaacagagatgccttcaacttgaacct |
2402652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 4247709 - 4247500
Alignment:
| Q |
1 |
atatagaattttaaatctcaacagatctgtcaaagacatcatcaattgctttatctgtctccaaatgtacaaccttcaatgaattaagaatcgaaggaac |
100 |
Q |
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||||||||||| ||||||||||| || ||||||||||| ||| | | ||| |||| || |||| |||| |||||||| ||||||||| ||||| |
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| T |
4247709 |
atatagaatttgcaatctcaacagctcggtcaaagacattatcgagttcttcgtctgacttcaaagatacagccttcaatacattaagaattataggaat |
4247610 |
T |
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| Q |
101 |
aactgctcttacttgctcaaactgacgcatctgggtagagataaggactgaaaatgaaaaaataggtatgtatgaaaacatccaaggaatgtggcgtcaa |
200 |
Q |
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| || ||||||||| |||||||||| || || | || |||||||||||||| |||||| |||||||| ||||||||||||||||||| |||| |||| |
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| T |
4247609 |
ggtttcttttacttgctgaaactgacgcctccggatggatataaggactgaaaaggaaaaa-taggtatgaatgaaaacatccaaggaatatggcatcaa |
4247511 |
T |
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| Q |
201 |
ctcattgaaag |
211 |
Q |
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|||||||||| |
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| T |
4247510 |
atcattgaaag |
4247500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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