View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19829_low_36 (Length: 264)
Name: NF19829_low_36
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_low_36 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 248
Target Start/End: Complemental strand, 35982675 - 35982440
Alignment:
| Q |
13 |
aatatctatctggaatgtcatgaaaggaaaaccatcattaacaaaaaagaaagaaactaaataaagttaattaactatatcaggataccacaagaatcga |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35982675 |
aatatctatctggaatgtcatgaaaggaaaaccatcattaataaaaaagaaagaaactaaataaagttaattaactatatcaggataccacaagaatcga |
35982576 |
T |
|
| Q |
113 |
acttgtttcgccgatagaagatggaaaacaaaaagtgagtaaataacatgaattgttattgttaaccaatagctgtcaaaaatggcagggcaaatctcct |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35982575 |
acttgtttcgccgatagaagatggaaaacaaaaagtgagtaaataacatgaattgttattgttaaccaatagctgtcaaaaatggcagggcaaatctcct |
35982476 |
T |
|
| Q |
213 |
ttggcaaaccagaaacattcctgtttaagattttta |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
35982475 |
ttggcaaaccagaaacattcctgtttaagattttta |
35982440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 35998088 - 35997873
Alignment:
| Q |
13 |
aatatctatctggaatgtcatgaaaggaaaaccatcattaacaaaaa------agaaagaaactaaataaagttaattaactatatcaggataccacaag |
106 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||| | ||||||||| ||||||||||||||| ||| |||||| |||||| |||||||||| |
|
|
| T |
35998088 |
aatatctatctgcaatgtcatgaaaggaaagccattagtaacaaaaagaaagtagaaagaaactaaatgaagataatta----tatcagcataccacaag |
35997993 |
T |
|
| Q |
107 |
aatcgaacttgtttcgccgatagaagatggaaaacaaaaagtgagtaaataacatgaattgttattgttaaccaatagctgtcaaaaatggcagggcaaa |
206 |
Q |
| |
|
|| | | || || || || ||||||||||||||| ||||| ||| |||| ||||| | |||| ||| |||||||||||||||||||||||| |
|
|
| T |
35997992 |
tatgggagacgtgtcatggaccgactatggaaaacaaaaagaaagtaattaatatgatgtgttagtcttaatcaaaagctgtcaaaaatggcagggcaaa |
35997893 |
T |
|
| Q |
207 |
tctcctttggcaaaccagaa |
226 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
35997892 |
tctcctttggcaaaccagaa |
35997873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 133 - 226
Target Start/End: Complemental strand, 35993200 - 35993107
Alignment:
| Q |
133 |
atggaaaacaaaaagtgagtaaataacatgaattgttattgttaaccaatagctgtcaaaaatggcagggcaaatctcctttggcaaaccagaa |
226 |
Q |
| |
|
||||||||||||||| ||||| ||| |||| ||||| | |||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35993200 |
atggaaaacaaaaagaaagtaattaatatgatgtgttagtcttaatcaaaagctgtcaaaaatggcagggcaaatctcctttggcaaaccagaa |
35993107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 35993318 - 35993246
Alignment:
| Q |
13 |
aatatctatctggaatgtcatgaaaggaaaaccatcattaacaaaaaagaaagaaactaaataaagttaatta |
85 |
Q |
| |
|
||||||||| || ||||||||||| ||||| |||| | ||||||| ||||||||||||||| |||||||||| |
|
|
| T |
35993318 |
aatatctatgtgcaatgtcatgaagggaaagccattagtaacaaagtagaaagaaactaaatgaagttaatta |
35993246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 183 - 226
Target Start/End: Complemental strand, 35988432 - 35988389
Alignment:
| Q |
183 |
agctgtcaaaaatggcagggcaaatctcctttggcaaaccagaa |
226 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
35988432 |
agctgtcaaaaatggcagggcaaatcttctttggcaaactagaa |
35988389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University