View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_low_38 (Length: 257)
Name: NF19829_low_38
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 36364318 - 36364500
Alignment:
| Q |
20 |
tgcaggggtggaacgaattctttaacatttcttcattatttaattaaatgtcgaggttattaacagtatgctaattaaatacataattaatgactaatca |
119 |
Q |
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| T |
36364318 |
tgcaggggtggaacgaattctttaacatttcttcattatttaattaaatgtcgaggttattaacagtatgctaattaaatacataattaatgactaatca |
36364417 |
T |
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| Q |
120 |
aatactgtttcttttgaaataacagaaattgcatttatagtgttctctacttcgtgagcctaacaattcattttgagtatgtt |
202 |
Q |
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| T |
36364418 |
aataccgtttcttttgaaataacagaaattgcatttatagtgttctctacttcgtgagcctaacaattcattttgagtatgtt |
36364500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 237
Target Start/End: Original strand, 36364522 - 36364551
Alignment:
| Q |
208 |
atgaatcttatgattcttactctctgagtc |
237 |
Q |
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| T |
36364522 |
atgaatcttatgattcttactctctgagtc |
36364551 |
T |
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