View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_low_39 (Length: 253)
Name: NF19829_low_39
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 15 - 235
Target Start/End: Complemental strand, 5039047 - 5038827
Alignment:
| Q |
15 |
atgaacggcatggttaaagttttaccaatgccactagaaaattgcctttctcnnnnnnnccaaaaccgtgctaagtaaactactgtattcaaaatgacaa |
114 |
Q |
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| T |
5039047 |
atgaacggcatggctaaacttttaccaatgccactagaaaattgcctttctctttttttccaaaaccgtgctaagtaaactactgtattcaaaatgacaa |
5038948 |
T |
|
| Q |
115 |
gacaataaggagtcacatgatgtaacaatctttccattatcatacctgttgattggtataccaatagtaagaaagcaggaaatgatcaggtgctgttttg |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5038947 |
gacaataaggagtcacatgatgtaacaatctttccattatcatacatgttgattggtataccaatagtaagaaagcaggaaatgatcaggtgctgttttg |
5038848 |
T |
|
| Q |
215 |
agtattgcaaaatgtgcgggg |
235 |
Q |
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||||||||||||||||||||| |
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| T |
5038847 |
agtattgcaaaatgtgcgggg |
5038827 |
T |
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