View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19829_low_40 (Length: 250)

Name: NF19829_low_40
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19829_low_40
NF19829_low_40
[»] chr7 (16 HSPs)
chr7 (12-250)||(26242384-26242622)
chr7 (12-250)||(26250832-26251070)
chr7 (12-250)||(26297432-26297670)
chr7 (18-196)||(26223525-26223703)
chr7 (18-196)||(26203887-26204065)
chr7 (12-205)||(26191252-26191445)
chr7 (17-209)||(26179075-26179267)
chr7 (20-205)||(26128562-26128747)
chr7 (17-205)||(19103514-19103702)
chr7 (20-196)||(26087776-26087952)
chr7 (20-196)||(26111564-26111740)
chr7 (20-205)||(26155198-26155383)
chr7 (17-91)||(26301803-26301877)
chr7 (18-91)||(26207428-26207501)
chr7 (133-195)||(26301904-26301966)
chr7 (20-91)||(26226965-26227036)
[»] chr4 (1 HSPs)
chr4 (20-205)||(44903245-44903430)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 26242384 - 26242622
Alignment:
Q  12 atgaagtatccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctctgactgtggaatttattttg 111  Q
    |||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  26242384 atgatgtatccttggactgtggaatcagctgcaaaactaaatattccaaggattcacttttgcagctcaagctacttctccgactgtggaatttattttg 26242483  T
Q  112 ttagaaaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatgacccgtctgcaacttag 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  26242484 ttagaaaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatgacccgtcttcaactttg 26242583  T
Q  212 tgactgggaaagggaaaccaatgttatgacggccatttt 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  26242584 tgactgggaaagggaaaccaatgttatgacggccatttt 26242622  T

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Target: chr7; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 26250832 - 26251070
Alignment:
Q  12 atgaagtatccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctctgactgtggaatttattttg 111  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| || |||| |||||||||||    
T  26250832 atgaagtatccttggactgtagaatcagctgcaaaactaaacattccaaggatttacttttgcagctcaagctacttctccgaatgtgcaatttattttg 26250931  T
Q  112 ttagaaaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatgacccgtctgcaacttag 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |    
T  26250932 ttagaaaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacaattgagatgacccgtcagcaactttg 26251031  T
Q  212 tgactgggaaagggaaaccaatgttatgacggccatttt 250  Q
    ||| ||||||  ||||| ||||| ||||| |||||||||    
T  26251032 tgattgggaattggaaaacaatgctatgaaggccatttt 26251070  T

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Target: chr7; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 26297432 - 26297670
Alignment:
Q  12 atgaagtatccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctctgactgtggaatttattttg 111  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  | |||| |||||||||||    
T  26297432 atgaaatacccttggactgtggaatcagctgcaaaactaaacattccaaggattgacttttacagctcaagctacttctcctattgtgcaatttattttg 26297531  T
Q  112 ttagaaaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatgacccgtctgcaacttag 211  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||| |||||||| |||      
T  26297532 ttagaaaatataaaccccattataatttagtttctgaaacacagaaatttacaattccttgtttacctcataccattgagatgacacgtctgcagcttca 26297631  T
Q  212 tgactgggaaagggaaaccaatgttatgacggccatttt 250  Q
    | | ||||||||||||| ||| | |||||||||||||||    
T  26297632 taattgggaaagggaaaacaacgctatgacggccatttt 26297670  T

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Target: chr7; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 26223525 - 26223703
Alignment:
Q  18 tatccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctctgactgtggaatttattttgttagaa 117  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  | |||| ||  |||||||||||||    
T  26223525 tatccttggacagttgaatcagctgcaaaactaaacattccaaggatttacttttacagctcaagctacttctccaattgtgcaagctattttgttagaa 26223624  T
Q  118 aatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatgac 196  Q
    | |||| ||| ||| |||||||||||||||||||||||||||||||  |||||||||| ||||||||| ||||||||||    
T  26223625 agtatagacctcatgataatttagtttctgatacacagaaatttactgttccttgtttgcctcatacaattgagatgac 26223703  T

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Target: chr7; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 26203887 - 26204065
Alignment:
Q  18 tatccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctctgactgtggaatttattttgttagaa 117  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  | ||||  |  |||||||||||||    
T  26203887 tatccttggacagttgaatcagctgcaaaactaaacattccaaggatttacttttacagctcaagctacttctccaattgtgcgagctattttgttagaa 26203986  T
Q  118 aatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatgac 196  Q
    | |||| ||| ||| |||||||||||||||||||||||||||||||  |||||||||| ||||||||| ||||||||||    
T  26203987 agtatagacctcatgataatttagtttctgatacacagaaatttaccgttccttgtttgcctcatacaattgagatgac 26204065  T

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Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 12 - 205
Target Start/End: Original strand, 26191252 - 26191445
Alignment:
Q  12 atgaagtatccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctctgactgtggaatttattttg 111  Q
    |||| |||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||   |||||   || |||||     
T  26191252 atgatgtatccttggacagtggaagcagctgcaaaactaaacattccaaggattcacttttatagctcaagttacttctccagctgtgcctttcatttta 26191351  T
Q  112 ttagaaaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatgacccgtctgca 205  Q
    | |  |||||||  || ||| ||||||||||||||||||||||||||||||| |||||| |||| ||||||||  |||||||||||| ||||||    
T  26191352 tcatgaaatataggcctcatgataatttagtttctgatacacagaaatttactattcctagttttcctcataccattgagatgacccctctgca 26191445  T

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Target: chr7; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 209
Target Start/End: Original strand, 26179075 - 26179267
Alignment:
Q  17 gtatccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctctgactgtggaatttattttgttaga 116  Q
    |||||| ||||| |||||| ||||||||||||||   |||||||| ||||| | |||||||||||||||||||||  | ||||    | ||||  | |      
T  26179075 gtatccgtggacagtggaagcagctgcaaaactaggtattccaagaattcattattacagctcaagctacttctccaattgtgttgctcatttgatcatg 26179174  T
Q  117 aaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatgacccgtctgcaactt 209  Q
    || |||| |||  || ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| | ||||||||||    
T  26179175 aagtatagaccaaatgataatttagtttctgatacacagaaatttacaattccttgttttcctcatacaattgagatgactcctctgcaactt 26179267  T

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Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 26128562 - 26128747
Alignment:
Q  20 tccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctctgactgtggaatttattttgttagaaaa 119  Q
    ||||||||| || ||| ||||||||||||||   |||||||| ||||| | | |||||||||||||||||||  |||||| |    ||||| | |  ||     
T  26128562 tccttggacggtcgaagcagctgcaaaactaggtattccaagaattcattataacagctcaagctacttctccaactgtgcagaacattttatcatgaag 26128661  T
Q  120 tataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatgacccgtctgca 205  Q
    |||| |||  || |||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||| | ||||||    
T  26128662 tatagaccaaatgataatttagtttctgatacacagaaatttacaattcctggtttgcctcatacaattgagatgactcctctgca 26128747  T

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Target: chr7; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 19103702 - 19103514
Alignment:
Q  17 gtatccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctctgactgtggaatttattttgttaga 116  Q
    |||| ||||||| || ||| ||||||||||||||   |||||||| ||||||| |||||||||||||||||||||  ||||||   |  ||||| | |      
T  19103702 gtatgcttggaccgtcgaagcagctgcaaaactaggtattccaagaattcactattacagctcaagctacttctccaactgtgttttccattttatcatg 19103603  T
Q  117 aaatataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatgacccgtctgca 205  Q
    || |||| ||| ||| ||||||||||||||||||| |||||||||||  ||||| |||| ||||||||  |||||||||| | ||||||    
T  19103602 aagtatagacctcataataatttagtttctgatacgcagaaatttacggttcctggtttgcctcataccattgagatgactcctctgca 19103514  T

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Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 26087776 - 26087952
Alignment:
Q  20 tccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctctgactgtggaatttattttgttagaaaa 119  Q
    ||||||||| || ||| ||||||||||||||   |||||||| ||||||| |||||||||||||||||||||  |||||| |    ||||| | |  ||     
T  26087776 tccttggacggtcgaagcagctgcaaaactaggtattccaagaattcactattacagctcaagctacttctccaactgtgcagaacattttatcatgaag 26087875  T
Q  120 tataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatgac 196  Q
    |||| ||| ||| ||||||| |||||||||||||||||||||||  ||||| | || |||||| || ||||||||||    
T  26087876 tatagacctcatgataatttggtttctgatacacagaaatttactgttcctggattccctcattcaattgagatgac 26087952  T

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Target: chr7; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 196
Target Start/End: Original strand, 26111564 - 26111740
Alignment:
Q  20 tccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctctgactgtggaatttattttgttagaaaa 119  Q
    ||||||||| || ||| ||||||||||||||   |||||||| ||||||| |||||||||||||||||||||  |||||| |    ||||| | |  ||     
T  26111564 tccttggacggtcgaagcagctgcaaaactaggtattccaagaattcactattacagctcaagctacttctccaactgtgcagaacattttatcatgaag 26111663  T
Q  120 tataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatgac 196  Q
    |||| ||| ||| ||||||| |||||||||||||||||||||||  ||||| | || |||||| || ||||||||||    
T  26111664 tatagacctcatgataatttggtttctgatacacagaaatttactgttcctggattccctcattcaattgagatgac 26111740  T

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Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 26155198 - 26155383
Alignment:
Q  20 tccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctctgactgtggaatttattttgttagaaaa 119  Q
    ||||||||| || ||| ||||||||| ||||   |||||||| ||||| | |||||||||||||||||||||  | ||||    | ||||  | |  ||     
T  26155198 tccttggacggtcgaagcagctgcaagactaggtattccaagaattcattattacagctcaagctacttctccaattgtgctgctcatttgatcatgaag 26155297  T
Q  120 tataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatgacccgtctgca 205  Q
    |||| ||| ||| |||||||||||||||||||||| ||||||||||||||| |||| ||||||||| |||| ||||| | ||||||    
T  26155298 tatagacctcatgataatttagtttctgatacacacaaatttacaattcctggtttgcctcatacaattgaaatgactcctctgca 26155383  T

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Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 26301803 - 26301877
Alignment:
Q  17 gtatccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctc 91  Q
    |||||||||||| || ||||||||| ||||||| |||||||| |||||  |||||||||||||||||||||||||    
T  26301803 gtatccttggacagttgaatcagcttcaaaactgaacattccgaggatgtacttttacagctcaagctacttctc 26301877  T

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Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 26207428 - 26207501
Alignment:
Q  18 tatccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctc 91  Q
    ||||| ||||| ||||||||||||||||||||   |||||||||| || ||| |||||||||||||||||||||    
T  26207428 tatccatggacagtggaatcagctgcaaaactcggcattccaaggctttactattacagctcaagctacttctc 26207501  T

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Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 26301904 - 26301966
Alignment:
Q  133 ataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatga 195  Q
    ||||||| ||||||||||||||||||||||| ||| || |||| ||||||||| |||||||||    
T  26301904 ataatttggtttctgatacacagaaatttactattgctggtttgcctcatacaattgagatga 26301966  T

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Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 26226965 - 26227036
Alignment:
Q  20 tccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctc 91  Q
    ||||||||| ||| |||||||||||||||    |||||| ||| || ||| |||||||||||||||||||||    
T  26226965 tccttggacagtgcaatcagctgcaaaacgcggcattcctaggctttactattacagctcaagctacttctc 26227036  T

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Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 44903245 - 44903430
Alignment:
Q  20 tccttggactgtggaatcagctgcaaaactaaacattccaaggattcacttttacagctcaagctacttctctgactgtggaatttattttgttagaaaa 119  Q
    |||||||||||||||||||||||||||||||| |||||| ||| || | | |||||||||||||||||||||  | |||| |  |||||||||||||||     
T  44903245 tccttggactgtggaatcagctgcaaaactaagcattcctaggctttattattacagctcaagctacttctccaattgtgcatgttattttgttagaaag 44903344  T
Q  120 tataaaccccattataatttagtttctgatacacagaaatttacaattccttgtttacctcatacagttgagatgacccgtctgca 205  Q
    |||| ||| ||| || |||||||||||||||||||||| ||||| ||||||||||| ||||||||  ||||||||| |||||||||    
T  44903345 tatagacctcatgatcatttagtttctgatacacagaagtttactattccttgtttgcctcataccattgagatgagccgtctgca 44903430  T

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