View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19829_low_41 (Length: 250)

Name: NF19829_low_41
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19829_low_41
NF19829_low_41
[»] chr8 (4 HSPs)
chr8 (109-235)||(3771692-3771813)
chr8 (4-83)||(3771588-3771667)
chr8 (175-234)||(3780100-3780159)
chr8 (46-78)||(30610868-30610900)
[»] chr4 (2 HSPs)
chr4 (37-83)||(34121107-34121153)
chr4 (43-77)||(38516122-38516156)
[»] chr6 (6 HSPs)
chr6 (10-83)||(27991878-27991956)
chr6 (4-83)||(2308312-2308395)
chr6 (4-83)||(278156-278238)
chr6 (44-83)||(33940956-33940995)
chr6 (39-73)||(1303424-1303458)
chr6 (109-146)||(27991859-27991896)
[»] chr5 (4 HSPs)
chr5 (110-162)||(2499529-2499581)
chr5 (43-76)||(2858199-2858232)
chr5 (43-76)||(38734681-38734714)
chr5 (43-76)||(2846378-2846411)
[»] scaffold1786 (1 HSPs)
scaffold1786 (43-77)||(1207-1241)
[»] chr2 (2 HSPs)
chr2 (43-77)||(6407957-6407991)
chr2 (43-76)||(39324820-39324853)
[»] chr1 (2 HSPs)
chr1 (43-77)||(23391941-23391975)
chr1 (43-77)||(8245431-8245465)
[»] chr3 (1 HSPs)
chr3 (43-76)||(54449836-54449869)


Alignment Details
Target: chr8 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 109 - 235
Target Start/End: Original strand, 3771692 - 3771813
Alignment:
Q  109 aatgtgaatgtgcccaaatatttttcatttagggttgtaaatacgagagaatttaatttcccttgcactcgtgttggccagttatagttttttattcaat 208  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||     |||||||||||||||||||||||||||| |||||||||||||    
T  3771692 aatgtgaatgtgcccaaatatttttcatttggggttgtaaatacgagagaatt-----tcccttgcactcgtgttggccagttatacttttttattcaat 3771786  T
Q  209 cgaaaagcaatggtcgacacaacctgt 235  Q
    |||||||||||||||||||||||||||    
T  3771787 cgaaaagcaatggtcgacacaacctgt 3771813  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 3771588 - 3771667
Alignment:
Q  4 aaaaacatttgagcacattcaaattaaataaagaaaaatgagaataaaactaaatgatgttgattgatgtgattatatta 83  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3771588 aaaaacatttgagcacactcaaattaaataaaaaaaaatgagaataaaactaaatgatgttgattgatgtgattatatta 3771667  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 3780100 - 3780159
Alignment:
Q  175 actcgtgttggccagttatagttttttattcaatcgaaaagcaatggtcgacacaacctg 234  Q
    ||||||||| |||||||||| ||||||||||||||||||| ||||| || ||||||||||    
T  3780100 actcgtgttagccagttatacttttttattcaatcgaaaatcaatgatctacacaacctg 3780159  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 78
Target Start/End: Complemental strand, 30610900 - 30610868
Alignment:
Q  46 aataaaactaaatgatgttgattgatgtgatta 78  Q
    |||||||||||||||| ||||||||||||||||    
T  30610900 aataaaactaaatgatattgattgatgtgatta 30610868  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 34121153 - 34121107
Alignment:
Q  37 aaaaatgagaataaaactaaatgatgttgattgatgtgattatatta 83  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  34121153 aaaaatgagagtaaaactaaatgatgttgattgatgtgattatatta 34121107  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 38516122 - 38516156
Alignment:
Q  43 gagaataaaactaaatgatgttgattgatgtgatt 77  Q
    |||||||||| ||||||||||||||||||||||||    
T  38516122 gagaataaaattaaatgatgttgattgatgtgatt 38516156  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 83
Target Start/End: Original strand, 27991878 - 27991956
Alignment:
Q  10 atttgagcacattcaaattaaataaagaaaa----atgagaataaaa-ctaaatgatgttgattgatgtgattatatta 83  Q
    ||||||||||||||| |||||||||| ||||    || ||||||||| ||||| |||||||||||||||||||||||||    
T  27991878 atttgagcacattcacattaaataaaaaaaattaaataagaataaaaactaaaagatgttgattgatgtgattatatta 27991956  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 2308312 - 2308395
Alignment:
Q  4 aaaaacatttgagcacattcaaattaaataaagaaaa----atgagaataaaactaaatgatgttgattgatgtgattatatta 83  Q
    ||||||| ||||||||| ||| || ||||||| ||||    || |||||||||||| || ||||||||||||||||||||||||    
T  2308312 aaaaacacttgagcacactcacatcaaataaaaaaaattaaataagaataaaactagataatgttgattgatgtgattatatta 2308395  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 278156 - 278238
Alignment:
Q  4 aaaaacatttgagcacattcaaattaaataaagaaa---aatgagaataaaactaaatgatgttgattgatgtgattatatta 83  Q
    ||||| ||||||||||||||| || ||||||| |||   || ||||||||||  |||||| ||||||||||||||||| ||||    
T  278156 aaaaatatttgagcacattcatatcaaataaaaaaattaaaagagaataaaatcaaatgacgttgattgatgtgattaaatta 278238  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 33940956 - 33940995
Alignment:
Q  44 agaataaaactaaatgatgttgattgatgtgattatatta 83  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  33940956 agaataaaattaaatgatgttgattgatgtgattaaatta 33940995  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 1303424 - 1303458
Alignment:
Q  39 aaatgagaataaaactaaatgatgttgattgatgt 73  Q
    |||| ||||||||||||||||||||||||||||||    
T  1303424 aaataagaataaaactaaatgatgttgattgatgt 1303458  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 109 - 146
Target Start/End: Complemental strand, 27991896 - 27991859
Alignment:
Q  109 aatgtgaatgtgcccaaatatttttcatttagggttgt 146  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  27991896 aatgtgaatgtgctcaaatattattcatttagggttgt 27991859  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 2499581 - 2499529
Alignment:
Q  110 atgtgaatgtgcccaaatatttttcatttagggttgtaaatacgagagaattt 162  Q
    |||||||||||| ||||||||||||||||||||||||||  |||| |||||||    
T  2499581 atgtgaatgtgctcaaatatttttcatttagggttgtaaccacgaaagaattt 2499529  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 2858199 - 2858232
Alignment:
Q  43 gagaataaaactaaatgatgttgattgatgtgat 76  Q
    ||||||||||||||||||||||||||||||||||    
T  2858199 gagaataaaactaaatgatgttgattgatgtgat 2858232  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 38734681 - 38734714
Alignment:
Q  43 gagaataaaactaaatgatgttgattgatgtgat 76  Q
    ||||||||||||||||||||||||||||||||||    
T  38734681 gagaataaaactaaatgatgttgattgatgtgat 38734714  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 2846378 - 2846411
Alignment:
Q  43 gagaataaaactaaatgatgttgattgatgtgat 76  Q
    |||||||||||||||||||||||||||| |||||    
T  2846378 gagaataaaactaaatgatgttgattgaggtgat 2846411  T

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Target: scaffold1786 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold1786
Description:

Target: scaffold1786; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 1207 - 1241
Alignment:
Q  43 gagaataaaactaaatgatgttgattgatgtgatt 77  Q
    |||||||||||||||||||||||||||||||||||    
T  1207 gagaataaaactaaatgatgttgattgatgtgatt 1241  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 6407991 - 6407957
Alignment:
Q  43 gagaataaaactaaatgatgttgattgatgtgatt 77  Q
    |||||||||||||||||||||||||||||||||||    
T  6407991 gagaataaaactaaatgatgttgattgatgtgatt 6407957  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 39324853 - 39324820
Alignment:
Q  43 gagaataaaactaaatgatgttgattgatgtgat 76  Q
    ||||||||||||||||||| ||||||||||||||    
T  39324853 gagaataaaactaaatgatattgattgatgtgat 39324820  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 43 - 77
Target Start/End: Complemental strand, 23391975 - 23391941
Alignment:
Q  43 gagaataaaactaaatgatgttgattgatgtgatt 77  Q
    |||||||||||||||||||||||||||||||||||    
T  23391975 gagaataaaactaaatgatgttgattgatgtgatt 23391941  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 8245431 - 8245465
Alignment:
Q  43 gagaataaaactaaatgatgttgattgatgtgatt 77  Q
    |||||||||| ||||||||||||||||||||||||    
T  8245431 gagaataaaattaaatgatgttgattgatgtgatt 8245465  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 76
Target Start/End: Original strand, 54449836 - 54449869
Alignment:
Q  43 gagaataaaactaaatgatgttgattgatgtgat 76  Q
    ||||||||||||||||||| ||||||||||||||    
T  54449836 gagaataaaactaaatgatattgattgatgtgat 54449869  T

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