View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19829_low_47 (Length: 235)

Name: NF19829_low_47
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19829_low_47
NF19829_low_47
[»] chr6 (28 HSPs)
chr6 (20-220)||(27605013-27605213)
chr6 (39-144)||(26655750-26655855)
chr6 (39-144)||(26761721-26761826)
chr6 (39-155)||(28780889-28781005)
chr6 (39-155)||(27718700-27718816)
chr6 (39-144)||(28786039-28786144)
chr6 (39-155)||(27725166-27725281)
chr6 (39-144)||(26802199-26802308)
chr6 (41-155)||(27698817-27698929)
chr6 (45-122)||(27611329-27611406)
chr6 (39-160)||(27338386-27338500)
chr6 (39-160)||(27399126-27399240)
chr6 (39-144)||(27228995-27229098)
chr6 (39-120)||(28792184-28792265)
chr6 (57-142)||(26823609-26823694)
chr6 (46-172)||(26055696-26055818)
chr6 (47-172)||(26048615-26048736)
chr6 (47-172)||(26069784-26069905)
chr6 (47-172)||(26075666-26075787)
chr6 (47-172)||(26142635-26142756)
chr6 (47-141)||(25481540-25481633)
chr6 (47-141)||(25538338-25538431)
chr6 (49-137)||(27427934-27428020)
chr6 (45-143)||(27678716-27678806)
chr6 (47-157)||(25579499-25579610)
chr6 (49-143)||(27706733-27706819)
chr6 (39-115)||(31284078-31284154)
chr6 (40-73)||(25071485-25071518)
[»] scaffold0277 (2 HSPs)
scaffold0277 (39-155)||(13953-14069)
scaffold0277 (39-144)||(4992-5102)
[»] scaffold0349 (3 HSPs)
scaffold0349 (39-155)||(8122-8238)
scaffold0349 (39-155)||(3743-3858)
scaffold0349 (41-155)||(14678-14790)
[»] scaffold1254 (1 HSPs)
scaffold1254 (39-160)||(238-352)
[»] scaffold0419 (1 HSPs)
scaffold0419 (39-160)||(7277-7391)
[»] chr4 (7 HSPs)
chr4 (39-154)||(18655785-18655898)
chr4 (39-154)||(18699708-18699821)
chr4 (39-144)||(18731812-18731915)
chr4 (43-144)||(18679879-18679978)
chr4 (49-137)||(17989368-17989454)
chr4 (49-137)||(18073535-18073621)
chr4 (39-78)||(18724393-18724432)
[»] scaffold0003 (1 HSPs)
scaffold0003 (49-137)||(59343-59429)
[»] chr1 (2 HSPs)
chr1 (45-99)||(28127988-28128042)
chr1 (60-102)||(28164691-28164733)


Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 220
Target Start/End: Original strand, 27605013 - 27605213
Alignment:
Q  20 ataggaaaatgaagaggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27605013 ataggaaaatgaagaggatgaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaa 27605112  T
Q  120 tgagtaagtttttgtggtctgtgatttggagtctttaatataacaaggagaaattgttcttaagaaatagttatttttgtcataagtttttgcggtctgt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  27605113 tgagtaagtttttgtggtctgtgatttggagtctttaatataacaaggagaaattgttcttaataaatagttattttggtcataagtttttgcggtctgt 27605212  T
Q  220 g 220  Q
    |    
T  27605213 g 27605213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 26655855 - 26655750
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26655855 gaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtc 26655756  T
Q  139 tgtgat 144  Q
    ||||||    
T  26655755 tgtgat 26655750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 26761826 - 26761721
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26761826 gaggatgaggaaggtgattgtatagccatgagaattgagagaaaatggatgaaaaaagagtttgggaatgcagaatatgaatgagtaagtttttgtggtc 26761727  T
Q  139 tgtgat 144  Q
    ||||||    
T  26761726 tgtgat 26761721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 39 - 155
Target Start/End: Complemental strand, 28781005 - 28780889
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  28781005 gaggaagaggaaggtaattgcatagccatgataattgagagaaattggatgaaaaaagagtttgagaattcagaatatgaatgagtttgtttttgtggtc 28780906  T
Q  139 tgtgatttggagtcttt 155  Q
    ||||||||  |||||||    
T  28780905 tgtgatttaaagtcttt 28780889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 27718700 - 27718816
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||    
T  27718700 gaggatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaaaaagagtttgagaatgcagaatatgaatgagtgaatttttgtgttc 27718799  T
Q  139 tgtgatttggagtcttt 155  Q
    |||||| || |||||||    
T  27718800 tgtgatgtgaagtcttt 27718816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 28786144 - 28786039
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  28786144 gaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattcagaatatgaatgagtttgtttttgtggtc 28786045  T
Q  139 tgtgat 144  Q
    ||||||    
T  28786044 tgtgat 28786039  T

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Target: chr6; HSP #7
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 27725166 - 27725281
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  27725166 gaggatgaggaaggtgattgtatagccatgacaattgagagaaataggatgaaaaaagagtttgagaatgcagaatatgaatg-gtaaatttttgtggtc 27725264  T
Q  139 tgtgatttggagtcttt 155  Q
    ||| || || |||||||    
T  27725265 tgttatgtgaagtcttt 27725281  T

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Target: chr6; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 26802308 - 26802199
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaa----gagtttgagaatgcagaatatgaatgagtaagtttttgt 134  Q
    ||||||||||||||  | ||||||||||||| ||||| |||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||    
T  26802308 gaggatgaggaaggagactgcatagccatgaaaattgtgagaaattggatgaaaaaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgt 26802209  T
Q  135 ggtctgtgat 144  Q
    ||||||||||    
T  26802208 ggtctgtgat 26802199  T

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Target: chr6; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 27698817 - 27698929
Alignment:
Q  41 ggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctg 140  Q
    ||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||    
T  27698817 ggatgaggaaggtgattgtatagccatgagaattgagagaaataggatg-aaaaagagtttgagaatgcagaatatgaatgagtaa-attttgtgttctg 27698914  T
Q  141 tgatttggagtcttt 155  Q
    |||| || |||||||    
T  27698915 tgatgtgaagtcttt 27698929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 27611329 - 27611406
Alignment:
Q  45 gaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatga 122  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27611329 gaggaagctaattgcatagccatgaaaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatga 27611406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 27338386 - 27338500
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||| |||||| || |||||||||||||||||||||||||||||  |||||||||| ||||||||||       |||||||||||||||||||||||||    
T  27338386 gaggaagaggaaagtgattgcatagccatgagaattgagagaaataagatgaaaaaaaagtttgagaa-------tatgaatgagtaagtttttgtggtc 27338478  T
Q  139 tgtgatttggagtctttaatat 160  Q
    |||||| |||||||||||||||    
T  27338479 tgtgatgtggagtctttaatat 27338500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 27399126 - 27399240
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||| |||||| || |||||||||||||||||||||||||||||  |||||||||| ||||||||||       |||||||||||||||||||||||||    
T  27399126 gaggaagaggaaagtgattgcatagccatgagaattgagagaaataagatgaaaaaaaagtttgagaa-------tatgaatgagtaagtttttgtggtc 27399218  T
Q  139 tgtgatttggagtctttaatat 160  Q
    |||||| |||||||||||||||    
T  27399219 tgtgatgtggagtctttaatat 27399240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 39 - 144
Target Start/End: Complemental strand, 27229098 - 27228995
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||| ||||||||| |||| |||||||||||| |||||||||||||||||||||  |||||| ||||||||||||||||||||||| |||||||||||     
T  27229098 gaggaagaggaaggtgattgtatagccatgagacttgagagaaattggatgaaaa--gagttttagaatgcagaatatgaatgagtatgtttttgtggta 27229001  T
Q  139 tgtgat 144  Q
    ||||||    
T  27229000 tgtgat 27228995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 28792265 - 28792184
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaat 120  Q
    ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  28792265 gaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattcagaatatgaat 28792184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 26823694 - 26823609
Alignment:
Q  57 tgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 142  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||  |||||| ||||    
T  26823694 tgcatagccatgagaattgagagaaattggacgaagaaagagtttgagaatgcagaatatgaatgagtatgttactgtggtgtgtg 26823609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 172
Target Start/End: Complemental strand, 26055818 - 26055696
Alignment:
Q  46 aggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgatt 145  Q
    |||||||| |||||||||||||||||||||| ||||  |||||||||||||| ||||| |||| ||||||||||||||||| ||| |||||||||| |      
T  26055818 aggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgttagg 26055720  T
Q  146 tggagtctttaatataacaaggagaaa 172  Q
    |||| |||||||   ||||||||||||    
T  26055719 tggattctttaa---aacaaggagaaa 26055696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 26048736 - 26048615
Alignment:
Q  47 ggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgattt 146  Q
    ||||||| |||||||||||||||||||||| ||||  |||||||||||||| ||||| |||| ||||||||||||||||| ||| |||||||||| |  |    
T  26048736 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgttaggt 26048638  T
Q  147 ggagtctttaatataacaaggagaaa 172  Q
    ||| |||||||   ||||||||||||    
T  26048637 ggattctttaa---aacaaggagaaa 26048615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 26069905 - 26069784
Alignment:
Q  47 ggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgattt 146  Q
    ||||||| |||||||||||||||||||||| ||||  |||||||||||||| ||||| |||| ||||||||||||||||| ||| |||||||||| |  |    
T  26069905 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgttaggt 26069807  T
Q  147 ggagtctttaatataacaaggagaaa 172  Q
    ||| |||||||   ||||||||||||    
T  26069806 ggattctttaa---aacaaggagaaa 26069784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 26075787 - 26075666
Alignment:
Q  47 ggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgattt 146  Q
    ||||||| |||||||||||||||||||||| ||||  |||||||||||||| ||||| |||| ||||||||||||||||| ||| |||||||||| |  |    
T  26075787 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgttaggt 26075689  T
Q  147 ggagtctttaatataacaaggagaaa 172  Q
    ||| |||||||   ||||||||||||    
T  26075688 ggattctttaa---aacaaggagaaa 26075666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 26142756 - 26142635
Alignment:
Q  47 ggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgattt 146  Q
    ||||||| |||||||||||||||||||||| ||||  |||||||||||||| ||||| |||| ||||||||||||||||| ||| |||||||||| |  |    
T  26142756 ggaaggtgattgcatagccatgagaattgaaagaatatggatgaaaaaagactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgttaggt 26142658  T
Q  147 ggagtctttaatataacaaggagaaa 172  Q
    ||| |||||||   ||||||||||||    
T  26142657 ggattctttaa---aacaaggagaaa 26142635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 25481633 - 25481540
Alignment:
Q  47 ggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 141  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||||| | ||||| |||| ||||||||||||||||| ||| ||||||||||    
T  25481633 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaaaaaaaactttgaaaatggagaatatgaatgagtaa-tttgtgtggtctgt 25481540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 47 - 141
Target Start/End: Complemental strand, 25538431 - 25538338
Alignment:
Q  47 ggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgt 141  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||||||||| ||||| |||| ||||||||||||| ||| ||| ||||||||||    
T  25538431 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaaaaaagactttgaaaatggagaatatgaatgattaa-tttgtgtggtctgt 25538338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 27427934 - 27428020
Alignment:
Q  49 aaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 137  Q
    ||||||||||||| |||||||||||||||||||||  ||||| ||  |||||||||||||||||||||||||||| | |||||||||||    
T  27427934 aaggtaattgcatggccatgagaattgagagaaataagatgagaa--gagtttgagaatgcagaatatgaatgaggatgtttttgtggt 27428020  T

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Target: chr6; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 27678806 - 27678716
Alignment:
Q  45 gaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtga 143  Q
    ||||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||||       ||||||||||||| |||||||||||||||||||    
T  27678806 gaggaaggtgattgcatagccatgagattttagagaaattagatgaaaaaagagtttga-------gaatatgaatgag-aagtttttgtggtctgtga 27678716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 47 - 157
Target Start/End: Complemental strand, 25579610 - 25579499
Alignment:
Q  47 ggaaggtaattgcatagccatgagaattgagagaaattggatga--aaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtgat 144  Q
    ||||||| |||||||||||||||||||||| |||| ||||||||  ||||| | ||||| |||| ||||||||||||||||| | | ||||||||||||     
T  25579610 ggaaggtgattgcatagccatgagaattgaaagaatttggatgaataaaaaaactttgaaaatggagaatatgaatgagtaa-tgtgtgtggtctgtgag 25579512  T
Q  145 ttggagtctttaa 157  Q
     |||| |||||||    
T  25579511 gtggattctttaa 25579499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 143
Target Start/End: Original strand, 27706733 - 27706819
Alignment:
Q  49 aaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtga 143  Q
    ||||| ||||||||||||||||| || ||||||||| |||||||||||||||||       |||||||||||||| |||||||||||||||||||    
T  27706733 aaggtgattgcatagccatgagattttagagaaattagatgaaaaaagagtttg-------agaatatgaatgag-aagtttttgtggtctgtga 27706819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 115
Target Start/End: Complemental strand, 31284154 - 31284078
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaata 115  Q
    ||||| ||||||| | ||||||||||||||||| |||||||||  |||||||| ||||| |||||||||||||||||    
T  31284154 gaggaagaggaagatgattgcatagccatgagatttgagagaatatggatgaagaaagaatttgagaatgcagaata 31284078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 73
Target Start/End: Complemental strand, 25071518 - 25071485
Alignment:
Q  40 aggatgaggaaggtaattgcatagccatgagaat 73  Q
    ||||||| ||||||||||||||||||||||||||    
T  25071518 aggatgaagaaggtaattgcatagccatgagaat 25071485  T

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Target: scaffold0277 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 13953 - 14069
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||    
T  13953 gaggaagaggaaggtaattgcatagccatgataattgagagaaattggatgaaaaaagagtttgagaattcagaatatgaatgagtttgtttttgtggtc 14052  T
Q  139 tgtgatttggagtcttt 155  Q
    ||||||||  |||||||    
T  14053 tgtgatttaaagtcttt 14069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 4992 - 5102
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaat-----gagtaagtttttg 133  Q
    ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||     || ||||||||||    
T  4992 gaggatgaggaaggtgattgtatagccataagaattgagagaaattggatgaaaaaagagtttgagaattcagaatatgaatttaatgaataagtttttg 5091  T
Q  134 tggtctgtgat 144  Q
    |||||||||||    
T  5092 tggtctgtgat 5102  T

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Target: scaffold0349 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 8122 - 8238
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| | |||||||| ||    
T  8122 gaggatgaggaaggtgattgtatagccatgagaattgagagaaataggatgaaaaaagagtttgagaatgcagaatatgaatgagtgaatttttgtgttc 8221  T
Q  139 tgtgatttggagtcttt 155  Q
    |||||| || |||||||    
T  8222 tgtgatgtgaagtcttt 8238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 39 - 155
Target Start/End: Original strand, 3743 - 3858
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||    
T  3743 gaggatgaggaaggtgattgtatagccatgacaattgagagaaataggatgaaaaaagagtttgagaatgcagaatatgaatg-gtaaatttttgtggtc 3841  T
Q  139 tgtgatttggagtcttt 155  Q
    ||| || || |||||||    
T  3842 tgttatgtgaagtcttt 3858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 155
Target Start/End: Original strand, 14678 - 14790
Alignment:
Q  41 ggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctg 140  Q
    ||||||||||||| |||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||  ||||||| ||||    
T  14678 ggatgaggaaggtgattgtatagccatgagaattgagagaaataggatg-aaaaagagtttgagaatgcagaatatgaatgagtaa-attttgtgttctg 14775  T
Q  141 tgatttggagtcttt 155  Q
    |||| || |||||||    
T  14776 tgatgtgaagtcttt 14790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1254 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold1254
Description:

Target: scaffold1254; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 39 - 160
Target Start/End: Original strand, 238 - 352
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||| |||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||||||||    
T  238 gaggaagagggaggtgattgcatagccatgagaattgagagaaattagatgaaaaaagagtttg-------agaatatgaatgagtaagtttttgtggtc 330  T
Q  139 tgtgatttggagtctttaatat 160  Q
    |||||| |||||||||||||||    
T  331 tgtgatgtggagtctttaatat 352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 39 - 160
Target Start/End: Complemental strand, 7391 - 7277
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||| |||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||||||||||||||||||||||    
T  7391 gaggaagagggaggtgattgcatagccatgagaattgagagaaattagatgaaaaaagagtttga-------gaatatgaatgagtaagtttttgtggtc 7299  T
Q  139 tgtgatttggagtctttaatat 160  Q
    |||||| |||||||||||||||    
T  7298 tgtgatgtggagtctttaatat 7277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 154
Target Start/End: Original strand, 18655785 - 18655898
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||||||||||||| ||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |  ||||||||||||||     
T  18655785 gaggatgaggaaggtgattgcctagccatgaaaattgagagaaactggatgaaaaaagagtttgagaatgcagaatatga--gtttaagtttttgtggta 18655882  T
Q  139 tgtgatttggagtctt 154  Q
    |||||| |||||||||    
T  18655883 tgtgatgtggagtctt 18655898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 39 - 154
Target Start/End: Original strand, 18699708 - 18699821
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||  |  |||||||||||||||    
T  18699708 gaggatgaggaaggtgattgcatagccatgagaattgagagaaactagatgaaaaaagagtttgagaatgcagaatatga--ggttaagtttttgtggtc 18699805  T
Q  139 tgtgatttggagtctt 154  Q
    ||  || |||||||||    
T  18699806 tgaaatgtggagtctt 18699821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 39 - 144
Target Start/End: Original strand, 18731812 - 18731915
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtc 138  Q
    ||||||||||||||| ||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||  |  ||||||||||||||     
T  18731812 gaggatgaggaaggtgattgcatagccatgaaaatcgagagaaactggatgaaaaaagagtttgagaatgcagaatatga--gtttaagtttttgtggta 18731909  T
Q  139 tgtgat 144  Q
    ||||||    
T  18731910 tgtgat 18731915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 144
Target Start/End: Original strand, 18679879 - 18679978
Alignment:
Q  43 atgaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggtctgtg 142  Q
    ||||||||||| ||||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||  |  |||||||||||||| ||||    
T  18679879 atgaggaaggtgattgcatagccatgaaaatagagagaaactggatgaaaaaagagtttgagaatgcagaatatga--gtttaagtttttgtggtatgtg 18679976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 137
Target Start/End: Original strand, 17989368 - 17989454
Alignment:
Q  49 aaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 137  Q
    ||||||||||||| |||||||||||||||||||||  ||||| ||  |||||||||||||||||||||||||||| | |||||||||||    
T  17989368 aaggtaattgcatggccatgagaattgagagaaataagatgagaa--gagtttgagaatgcagaatatgaatgaggatgtttttgtggt 17989454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 18073621 - 18073535
Alignment:
Q  49 aaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 137  Q
    ||||||||||||| |||||||||||||||||||||  ||||| ||  |||||||||||||||||||||||||||| | |||||||||||    
T  18073621 aaggtaattgcatggccatgagaattgagagaaataagatgagaa--gagtttgagaatgcagaatatgaatgaggatgtttttgtggt 18073535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 78
Target Start/End: Original strand, 18724393 - 18724432
Alignment:
Q  39 gaggatgaggaaggtaattgcatagccatgagaattgaga 78  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  18724393 gaggatgaggaaggtgattgcatagccatgagaattgaga 18724432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 137
Target Start/End: Complemental strand, 59429 - 59343
Alignment:
Q  49 aaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagtttgagaatgcagaatatgaatgagtaagtttttgtggt 137  Q
    ||||||||||||| |||||||||||||||||||||  ||||| ||  |||||||||||||||||||||||||||| | |||||||||||    
T  59429 aaggtaattgcatggccatgagaattgagagaaataagatgagaa--gagtttgagaatgcagaatatgaatgaggatgtttttgtggt 59343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 45 - 99
Target Start/End: Original strand, 28127988 - 28128042
Alignment:
Q  45 gaggaaggtaattgcatagccatgagaattgagagaaattggatgaaaaaagagt 99  Q
    |||||| || |||||||||||||||||||||| | ||||||||||| ||||||||    
T  28127988 gaggaatgtgattgcatagccatgagaattgacaaaaattggatgagaaaagagt 28128042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 28164691 - 28164733
Alignment:
Q  60 atagccatgagaattgagagaaattggatgaaaaaagagtttg 102  Q
    ||||||||||||||||| ||||||||||||| |||||||||||    
T  28164691 atagccatgagaattgacagaaattggatgagaaaagagtttg 28164733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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