View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19829_low_6 (Length: 520)
Name: NF19829_low_6
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19829_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 11 - 505
Target Start/End: Original strand, 6325308 - 6325804
Alignment:
| Q |
11 |
cataggatttacattttaacttcagtaagtcagattcaa--tacaaatttgaaatatgaatatcaattttttattttcagcggctgcatggaatccaaat |
108 |
Q |
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|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6325308 |
cataggatttacattttaacttcagtaagtcagactcaaaatacaaatttgaaatatgaatatcaattttttattttcagcggctgcatggaatccaaat |
6325407 |
T |
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| Q |
109 |
cccttatcaccgcgactaaatgtcatcaatggtcatggcggactcgcgattttgttctttgttggcaacaaaaatatcatgagacttgactaaaaagaat |
208 |
Q |
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| T |
6325408 |
cccttatcactgcgactaaatgtcatcaatagtcatggcggactcgcgattttgttctttgttggcagcaaaaatatcatgagacttgactaaaaagaat |
6325507 |
T |
|
| Q |
209 |
ccaatggtatgaccagcaacagcagcaatgaagattcctatattgaaagacataacagcaagcataacaaagtaatggaaactaatacgaaaaaagtata |
308 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
6325508 |
ccaatggtatgaccaacaacagcagcaatgaagattcctatattgaaagacataacagcaagcataaccaagtaaaggaaactaatacgaaaaaagtata |
6325607 |
T |
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| Q |
309 |
taatagcctgaatcaaccctcctttgatatgatttgtcccttgcttgatggttgatttgttaggcaaaaactcaacaaccaatgcaaggaaaaacacaaa |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6325608 |
taatagcctgaatcaaccctcctttgatatgatttgtcccttgcttgatggttgatttgttaggcaaaaactcaacaaccaatgcaaggaaaaacacaaa |
6325707 |
T |
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| Q |
409 |
agatagagctaaaatgtacatgccaagactttggttaggccacccagggaaaagtattatagcatcttttccccaatagagattcatgtgcattttc |
505 |
Q |
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| T |
6325708 |
agatagagctaaaatgtacatgccaagactttggttaggccacccagggaaaagtattatagcatcttttccccaatagagattcatgtgcattttc |
6325804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 335
Target Start/End: Original strand, 24027978 - 24028096
Alignment:
| Q |
217 |
atgaccagcaacagcagcaatgaagattcctatattgaaagacataacagcaagcataacaaagtaatggaaactaatacgaaaaaagtatataatagcc |
316 |
Q |
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||||||| ||||||||| || |||||||| | |||||||||||||||||||||||||| |||||| |||||| |||||||| ||||| | | || | |
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| T |
24027978 |
atgaccaagaacagcagctataaagattccaacattgaaagacataacagcaagcataagcaagtaaatgaaactgatacgaaagaagtaaacaccagac |
24028077 |
T |
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| Q |
317 |
tgaatcaaccctcctttga |
335 |
Q |
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|||||||| ||||| |||| |
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| T |
24028078 |
tgaatcaatcctcccttga |
24028096 |
T |
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