View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19829_low_7 (Length: 515)

Name: NF19829_low_7
Description: NF19829
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19829_low_7
NF19829_low_7
[»] chr6 (3 HSPs)
chr6 (37-511)||(26615910-26616384)
chr6 (37-511)||(26721838-26722312)
chr6 (417-496)||(16856604-16856683)
[»] chr2 (2 HSPs)
chr2 (310-415)||(653442-653548)
chr2 (345-419)||(40072222-40072296)
[»] chr4 (3 HSPs)
chr4 (417-501)||(43942830-43942914)
chr4 (417-496)||(22073963-22074042)
chr4 (371-419)||(22073891-22073939)
[»] chr3 (1 HSPs)
chr3 (417-501)||(5885023-5885107)
[»] scaffold0182 (1 HSPs)
scaffold0182 (417-501)||(10769-10853)
[»] chr1 (1 HSPs)
chr1 (370-419)||(51167539-51167588)
[»] chr5 (1 HSPs)
chr5 (318-418)||(27280962-27281061)


Alignment Details
Target: chr6 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 37 - 511
Target Start/End: Complemental strand, 26616384 - 26615910
Alignment:
Q  37 tattgacatgggagaagagctagaacaaaaattaaatgttgaatcatattgtgatttacgtaatttcccttcatctatatttggttttaaataagaaatg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26616384 tattgacatgggagaagagctagaacaaaaattaaatgttgaatcatattgtgatttacgtaatttcccttcatctatatttgtttttaaataagaaatg 26616285  T
Q  137 ttagggtatttttatcaacatttattttagtggtnnnnnnngactatcaacatttttgtaaccgnnnnnnnnctattatccttcaccttatttaatttaa 236  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  26616284 ttagggtatttttatcaacatttattttagtggtaaaaaaagactatcaacatttttgtaaccgaaaaaaaactattatccttcaccttatttaatttaa 26616185  T
Q  237 tgctacaacaaagaccaatttaaacataggataacacgaatgtggaatactattannnnnnnnnnnnnnattccataactgatatttcttaactatgacc 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||    
T  26616184 tgctacaacaaagaccaatttaaacataggataacacgaatgtggaatactattattttttatttttttattccataactgatatttcttaactatgacc 26616085  T
Q  337 attcatttactcattatatatacaaccactgatatgatctctatatttttaatttctactgatgagactatttgtcctacattttgggcaccaaattttg 436  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26616084 attcatttactcattatatatacaaccactaatatgatctctatatttttaatttctactgatgagactatttgtcctacattttgggcaccaaattttg 26615985  T
Q  437 ggttttgttcgtcaccacattcaattaacaattgattaggtcatcttcaattttgtattattgttcttctcactc 511  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||    
T  26615984 ggttttgttcgtcaccacattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactc 26615910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 37 - 511
Target Start/End: Complemental strand, 26722312 - 26721838
Alignment:
Q  37 tattgacatgggagaagagctagaacaaaaattaaatgttgaatcatattgtgatttacgtaatttcccttcatctatatttggttttaaataagaaatg 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  26722312 tattgacatgggagaagagctagaacaaaaattaaatgttgaatcatattgtgatttacgtaatttcccttcatctatatttgtttttaaataagaaatg 26722213  T
Q  137 ttagggtatttttatcaacatttattttagtggtnnnnnnngactatcaacatttttgtaaccgnnnnnnnnctattatccttcaccttatttaatttaa 236  Q
    ||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  26722212 ttagggtatttttatcaacatttattttagtggtaaaaaaagactatcaacatttttgtaaccgaaaaaaaactattatccttcaccttatttaatttaa 26722113  T
Q  237 tgctacaacaaagaccaatttaaacataggataacacgaatgtggaatactattannnnnnnnnnnnnnattccataactgatatttcttaactatgacc 336  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||    
T  26722112 tgctacaacaaagaccaatttaaacataggataacacgaatgtggaatactattattttttatttttttattccataactgatatttcttaactatgacc 26722013  T
Q  337 attcatttactcattatatatacaaccactgatatgatctctatatttttaatttctactgatgagactatttgtcctacattttgggcaccaaattttg 436  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26722012 attcatttactcattatatatacaaccactaatatgatctctatatttttaatttctactgatgagactatttgtcctacattttgggcaccaaattttg 26721913  T
Q  437 ggttttgttcgtcaccacattcaattaacaattgattaggtcatcttcaattttgtattattgttcttctcactc 511  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||    
T  26721912 ggttttgttcgtcaccacattcaattaacaattggttagatcatcttcaattttgtattattgttcttttcactc 26721838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 417 - 496
Target Start/End: Original strand, 16856604 - 16856683
Alignment:
Q  417 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattgattaggtcatcttcaattttgtatta 496  Q
    |||||||||||||||||||||||||||||| ||||| |||||||  |||||||| |||| ||||||||||| ||||||||    
T  16856604 attttgggcaccaaattttgggttttgttcatcaccgcattcaagcaacaattggttagttcatcttcaatattgtatta 16856683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 310 - 415
Target Start/End: Complemental strand, 653548 - 653442
Alignment:
Q  310 cataactgatatttcttaactatgaccattcatttactcattatatatacaaccactgatatgatctctata-tttttaatttctactgatgagactatt 408  Q
    ||||||| ||||||||||||||  | |||||| | ||||||||||||||| |||||| |||||||||| ||| |||||  ||||||||||||||||||||    
T  653548 cataactcatatttcttaactagaaacattcactcactcattatatatactaccactaatatgatctccatatttttttgtttctactgatgagactatt 653449  T
Q  409 tgtccta 415  Q
    |||||||    
T  653448 tgtccta 653442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 345 - 419
Target Start/End: Complemental strand, 40072296 - 40072222
Alignment:
Q  345 actcattatatatacaaccactgatatgatctctatatttttaatttctactgatgagactatttgtcctacatt 419  Q
    |||||||||| ||| ||||||| ||||||| || ||||||  | |||||||| || |||||||||||||||||||    
T  40072296 actcattatacatagaaccactaatatgatatcaatatttaaagtttctactaattagactatttgtcctacatt 40072222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 417 - 501
Target Start/End: Original strand, 43942830 - 43942914
Alignment:
Q  417 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattgattaggtcatcttcaattttgtattattgtt 501  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  |||||||| |||| ||||||||||| |||||||| ||||    
T  43942830 attttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgtt 43942914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 417 - 496
Target Start/End: Original strand, 22073963 - 22074042
Alignment:
Q  417 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattgattaggtcatcttcaattttgtatta 496  Q
    |||||| ||||||||||||||||||||||| ||||||| |||||  ||||||||  ||  ||||||||||||||| ||||    
T  22073963 attttgcgcaccaaattttgggttttgttcatcaccactttcaaacaacaattgtataattcatcttcaattttgaatta 22074042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 371 - 419
Target Start/End: Original strand, 22073891 - 22073939
Alignment:
Q  371 tgatctctatatttttaatttctactgatgagactatttgtcctacatt 419  Q
    ||||||| ||||||||| |||||| ||||| ||||||||||| ||||||    
T  22073891 tgatctcaatatttttagtttctattgatgtgactatttgtcttacatt 22073939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 417 - 501
Target Start/End: Complemental strand, 5885107 - 5885023
Alignment:
Q  417 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattgattaggtcatcttcaattttgtattattgtt 501  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  |||||||| |||| ||||||||||| |||||||| ||||    
T  5885107 attttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtattactgtt 5885023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 417 - 501
Target Start/End: Complemental strand, 10853 - 10769
Alignment:
Q  417 attttgggcaccaaattttgggttttgttcgtcaccacattcaattaacaattgattaggtcatcttcaattttgtattattgtt 501  Q
    |||||| ||||||||||||||||||||||| |||||||||||||  |||||||| |||| ||||||||||| |||| ||| ||||    
T  10853 attttgtgcaccaaattttgggttttgttcatcaccacattcaagcaacaattggttagttcatcttcaatattgtcttactgtt 10769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 51167588 - 51167539
Alignment:
Q  370 atgatctctatatttttaatttctactgatgagactatttgtcctacatt 419  Q
    |||||||| |||| |||| |||||||| | ||||||||||||||||||||    
T  51167588 atgatctcaatatatttagtttctactaaggagactatttgtcctacatt 51167539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 318 - 418
Target Start/End: Complemental strand, 27281061 - 27280962
Alignment:
Q  318 atatttcttaactatgaccattcatttactcattatatatacaaccactgatatgatctctatatttttaatttctactgatgagactatttgtcctaca 417  Q
    ||||||||||| ||| |  ||||| | ||| |||||||||||||||||| |||||  ||| ||||||||  |||||| | || ||| |||||||||||||    
T  27281061 atatttcttaaatataattattcactcacttattatatatacaaccactaatatgtactcaatattttt-ttttctaataataagattatttgtcctaca 27280963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University