View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1982_high_2 (Length: 436)
Name: NF1982_high_2
Description: NF1982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1982_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 19 - 322
Target Start/End: Complemental strand, 9703044 - 9702749
Alignment:
| Q |
19 |
tgaaccttaagtgtggggtttgaggctttgagggattcgaagactctcataataagagtgctttttcccacaccctaaaatcattttaataaattatatg |
118 |
Q |
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| T |
9703044 |
tgaaccttaagtgtggggtttgaggctttgagggattcgaagactctcataataagagtgctttttcccacaccctaaaatcattttaataaattatatg |
9702945 |
T |
|
| Q |
119 |
aatcatgattaatgattgaagtgatagagatttcaaagagaggaaaagttaaaattgatggaggaatcactcaccggaggacctgtcactagaaagcatt |
218 |
Q |
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| T |
9702944 |
aatcatgattaatgattgaagtgatagagatttcaaagagaggaaaagttaaaattgatggaggaatcactcaccggaggacctgtcactagaaagcatt |
9702845 |
T |
|
| Q |
219 |
ttccagtaccagccattgtttctgtttctcaaccttcacccaagtgatgaatatttatttatttttgtcttatgatggaacttaattacattttttatta |
318 |
Q |
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| T |
9702844 |
ttccagtaccaaccattgtttctgtttctcaaccttcacccaagtgatgaat--------atttttgtcttatgatggaacttaattacattttttatta |
9702753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 321 - 422
Target Start/End: Complemental strand, 9697827 - 9697725
Alignment:
| Q |
321 |
acaagggtatagaagtacttaagttttataattaatgataataatagatattacgcg-aaaaaatgagtttagtgcatgggaaaaagaaaatttaggtat |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||| || ||||||||||||||||||||| ||| |
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| T |
9697827 |
acaagggtatagaagtacttaagttttataattaatgataataatagatattatgcgaaaaaaatgaatttggttcatgggaaaaagaaaatttagatat |
9697728 |
T |
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| Q |
420 |
att |
422 |
Q |
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||| |
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| T |
9697727 |
att |
9697725 |
T |
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