View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1982_high_4 (Length: 288)
Name: NF1982_high_4
Description: NF1982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1982_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-144; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 7 - 276
Target Start/End: Complemental strand, 31444809 - 31444540
Alignment:
| Q |
7 |
ttgaggacactaaatccggattgtttatcaaatcttgattaatggctctaccggctggaccataattgtagttgctgtgataaaggatcaacatcccatt |
106 |
Q |
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| T |
31444809 |
ttgaggacactaaatccggattgtttatcaaatcttgattaatggctctaccggctggaccataattgtagttgctgtgataaaggatcaacatcccatt |
31444710 |
T |
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| Q |
107 |
agttcactaaacactcatatctataactcgaaatcaatgttaattcattatgttaagaaaaataaaataacatggtttgatatttagatgggggtctggt |
206 |
Q |
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| T |
31444709 |
agttcactaaacactcatatctataactagaaatcaatgttaattcattatgttaagaaaaataaaataacatggtttgatatttagatgggggtatggt |
31444610 |
T |
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| Q |
207 |
ttgaaatgctagaggcatgaagatgaaagaagcttactgagtgagttgaattggtcctctaccgtagtat |
276 |
Q |
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| T |
31444609 |
ttgaaatgctagaggcatgaagatgaaagaagcttactgagtgagttgaattggtcctctgccgtagtat |
31444540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 31434610 - 31434537
Alignment:
| Q |
11 |
ggacactaaatccggattgtttatcaaatcttgattaatggctctaccggctggaccataattgtagttgctgt |
84 |
Q |
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| T |
31434610 |
ggacactaaatccggattgtttatcaaatcttgattgatggcttttcccgcttgaccataattgtagtcgctgt |
31434537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 31430480 - 31430378
Alignment:
| Q |
15 |
actaaatccggattgtttatcaaatcttgattaatggctctaccggctggaccataattgtagttgctgtgataaaggatcaacatcccattagttcact |
114 |
Q |
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| T |
31430480 |
actagatccggattgtttatcaaatcttcattaatagctttacccgcttgaccgtaattgtaattgctgtgaacaagggtcaacgttgcattagtccact |
31430381 |
T |
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| Q |
115 |
aaa |
117 |
Q |
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||| |
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| T |
31430380 |
aaa |
31430378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 276
Target Start/End: Complemental strand, 31429535 - 31429489
Alignment:
| Q |
230 |
tgaaagaagcttactgagtgagttgaattggtcctctaccgtagtat |
276 |
Q |
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| T |
31429535 |
tgaaagaaacttactgagtgagttgaataggtcctctgccatagtat |
31429489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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