View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1982_low_1 (Length: 579)
Name: NF1982_low_1
Description: NF1982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1982_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 20 - 568
Target Start/End: Original strand, 22831363 - 22831910
Alignment:
| Q |
20 |
acttagggatcatttttaacatatccccaaccttgagatctgtcactagcttttgacgactgtacttctataatctacgaaaaatgtgtcatgtgaagct |
119 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22831363 |
acttagggatcatttttaacatatccc-aaccttgagatctgtcactagcttttgacgacagtacttctataatctacgaaaaatgtgtcatgtgaagct |
22831461 |
T |
|
| Q |
120 |
ttctccaaagcaactacagctggaacagcagcatctaaccatacaaaaacatggaattctgtagcttacaaaatagtaaatgttgagttagttctaaccc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22831462 |
ttctccaaagcaactacagctggaacagcagcatctaaccatacaaaaacatggaattctgtagcatacaaaatagtaaatgttgagttagttctaaccc |
22831561 |
T |
|
| Q |
220 |
tcaaggaaaaggaaaacaaatcgaaaattgtgagaatataaataaaacgatacaggaaatcacaattgctaccttcagaactttgtcttgtctttttaca |
319 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22831562 |
tcaaggaaaaggaaaacaaatagaaaattgtgagaatataaataaaacgatgcaggaaatcacaattgctaccttcagaactttgtcttgtctttttaca |
22831661 |
T |
|
| Q |
320 |
ttcattttctatatctaatcttttgttactgcctccattgtacaagaattgtcgttctatctgtcttgtttcttcacgctgccaaacctttgtctcattt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22831662 |
ttcattttctatatctaatcttttgttactgcctccattgtacaagaattgtcgttctatctgtcttgtttcttcacgctgccaaacctttgtctcattt |
22831761 |
T |
|
| Q |
420 |
cttgttagtgcactaaatttctctaatatacgataatgaggtgaagtacaatttttctataagattcttttannnnnnnncatcatatcttcctaatagt |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
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| T |
22831762 |
cttgttagtgcactaaatttctctaatatacgataatgaggtgaagtacactttttctataagattcttttattttttttcatcatatcttcctaatagt |
22831861 |
T |
|
| Q |
520 |
tcttttgcatgcagtgtgtatggatcttatcttccacttccacaggttc |
568 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
22831862 |
tcttttgcatgcagtgtgtatggatcttatcttccacttccacatgttc |
22831910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 116 - 308
Target Start/End: Original strand, 22983654 - 22983847
Alignment:
| Q |
116 |
agctttctccaaagcaactacagctggaacagcagcatctaaccatacaaaaacatggaattctgtagcttacaaaatagtaaatgttgagttagttcta |
215 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| | ||||| |||||||||||||||||| || |
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| T |
22983654 |
agctttctccaaagcaactacagctggaacagctacatctaaccagacaaaaacatggaattctgtagcatgaaaaatggtaaatgttgagttagtttta |
22983753 |
T |
|
| Q |
216 |
accctcaaggaaaaggaaaacaaatcga---aaattgtg-agaatataaataaaacgatacaggaaatcacaattgctaccttcagaactttgtctt |
308 |
Q |
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||||||||| |||||||||||||| | ||||| || || ||||||||||||| | || |||||||||||||||||||||||||| |||||| |
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| T |
22983754 |
accctcaagcaaaaggaaaacaaaaaaaattaaattctgtagcatataaataaaacaaaac---aaatcacaattgctaccttcagaactgtgtctt |
22983847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 245 - 349
Target Start/End: Original strand, 22843847 - 22843950
Alignment:
| Q |
245 |
aattgtgagaatataaataaaacgatacaggaaatcacaattgctaccttcagaactttgtcttgtctttttacattcattttctatatctaatcttttg |
344 |
Q |
| |
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||||||||| |||||||||||||||||| |||||||| ||||||||||| |||||||||||||| | | ||||||||||||| |||| ||||| |||||| |
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| T |
22843847 |
aattgtgaggatataaataaaacgatactggaaatcataattgctacctacagaactttgtctt-tgtctttacattcatttgctatttctaaacttttg |
22843945 |
T |
|
| Q |
345 |
ttact |
349 |
Q |
| |
|
||||| |
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|
| T |
22843946 |
ttact |
22843950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 416 - 491
Target Start/End: Original strand, 22983923 - 22984000
Alignment:
| Q |
416 |
atttcttgttagtgcactaaatttctctaatatacgataatgagg--tgaagtacaatttttctataagattctttta |
491 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||| |||||||| ||||||| ||| |||||||| |
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|
| T |
22983923 |
atttcgtgttagtgcactaaatttctctaatatacgataacgaggtttgaagtactctttttcttgaaggttctttta |
22984000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 527 - 568
Target Start/End: Original strand, 22823063 - 22823104
Alignment:
| Q |
527 |
catgcagtgtgtatggatcttatcttccacttccacaggttc |
568 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22823063 |
catgcagtgtgtatggatcttatcttccacttccacatgttc |
22823104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 534 - 568
Target Start/End: Complemental strand, 11544290 - 11544256
Alignment:
| Q |
534 |
tgtgtatggatcttatcttccacttccacaggttc |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
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|
| T |
11544290 |
tgtgtatggatcttatcttccacttccacatgttc |
11544256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 534 - 568
Target Start/End: Complemental strand, 11557711 - 11557677
Alignment:
| Q |
534 |
tgtgtatggatcttatcttccacttccacaggttc |
568 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |
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| T |
11557711 |
tgtgtatggatcttatcttccacttccacatgttc |
11557677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 120 - 284
Target Start/End: Complemental strand, 40945774 - 40945610
Alignment:
| Q |
120 |
ttctccaaagcaactacagctggaacagcagcatctaaccatacaaaa-acatggaattctgtagcttacaaaatagtaaatgttgagttagttctaacc |
218 |
Q |
| |
|
||||||| ||| |||||||||||||||||| ||||| ||| |||||| || || |||||||||| | ||||| |||| || ||| | || ||||| |
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| T |
40945774 |
ttctccagagctactacagctggaacagcaacatctggccagacaaaagacttgcaattctgtagagtgaaaaatggtaa-tgctgaagtcattataacc |
40945676 |
T |
|
| Q |
219 |
ctcaaggaaaaggaaaacaaatcgaaaattgtgagaatataaataaaacgatacaggaaatcacaa |
284 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| ||||||||| |||||| | | ||| |||||||||| |
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|
| T |
40945675 |
ctcaaggaaaaggaaaacaaatggaagattatgagaatatgaataaacccacacaagaaatcacaa |
40945610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 265
Target Start/End: Complemental strand, 40958776 - 40958625
Alignment:
| Q |
108 |
tcatgtgaagctttctccaaagcaactacagctggaacagcagcatctaaccatacaaaa-acatggaattctgtagcttacaaaatagtaaatgttgag |
206 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||||||| ||||| ||| |||||| | |||||||||| || | ||||| ||||||| |
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|
| T |
40958776 |
tcatgcgaagctttctccacagcaactacagctggaacagcaacatctggccagacaaaaggcttggaattctgcagagtgaaaaatggtaaatg----- |
40958682 |
T |
|
| Q |
207 |
ttagttctaaccctcaaggaaaaggaaaacaaatcgaaaattgtgagaatataaataaa |
265 |
Q |
| |
|
|| ||||||| ||||||||||||| ||||| ||| ||| |||||||||||||||| |
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|
| T |
40958681 |
--cattataacccttaaggaaaaggaaagcaaatagaagattatgagaatataaataaa |
40958625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 22507755 - 22507810
Alignment:
| Q |
100 |
aaaatgtgtcatgtgaagctttctccaaagcaactacagctggaacagcagcatct |
155 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||||||||| |||||||| ||||| |
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|
| T |
22507755 |
aaaatgtatcatgtgaagctttctccagagcaactacagcttgaacagcaacatct |
22507810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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