View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1982_low_10 (Length: 230)
Name: NF1982_low_10
Description: NF1982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1982_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 64 - 214
Target Start/End: Complemental strand, 28472736 - 28472586
Alignment:
| Q |
64 |
atagcatagagttagtgctaaatatttttagtttgatcagctgctatactttagcaggttgttgagcgaaacatcgacatacacgaggaacataagatca |
163 |
Q |
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| T |
28472736 |
atagcatagagttagtgctaaatatttttagtttgatcagctgctatactttagcaggttgttgagcgaaacatcgacatacacgaggaacataagatca |
28472637 |
T |
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| Q |
164 |
tgccacacaatcacaaacctaggacacccccacacacaatatcattgttgt |
214 |
Q |
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| T |
28472636 |
agccacacaatcacaaacctaggacacccccacacacaatatcattgttgt |
28472586 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 47805660 - 47805607
Alignment:
| Q |
1 |
ttgattggttgatatcatgagaggg----tatcctctaaataagatagggtaat |
50 |
Q |
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| T |
47805660 |
ttgattggttgatatcatgagagggtaaatatcctctaaacaagatagggtaat |
47805607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 28172212 - 28172156
Alignment:
| Q |
1 |
ttgattggttgatatcatgagagggtat----cctctaaataagatagggtaattta |
53 |
Q |
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| T |
28172212 |
ttgattggttgatatcatgagagggtaaataccctctaaataagatagtgtaattta |
28172156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 46719698 - 46719751
Alignment:
| Q |
1 |
ttgattggttgatatcatgagagggtat----cctctaaataagatagggtaat |
50 |
Q |
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| T |
46719698 |
ttgattggttgatatcatgagagggtaaataccctctaaataagagagggtaat |
46719751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 6096835 - 6096888
Alignment:
| Q |
1 |
ttgattggttgatatcatgagaggg----tatcctctaaataagatagggtaat |
50 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||| |||||||| |
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| T |
6096835 |
ttgattggttgatattatgagagggtaaatatcctctaaataagagagggtaat |
6096888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 38698804 - 38698857
Alignment:
| Q |
1 |
ttgattggttgatatcatgagaggg----tatcctctaaataagatagggtaat |
50 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||| |||||||| |
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| T |
38698804 |
ttgattggttgatatcatgagagggtaaatatcctctaaacaagagagggtaat |
38698857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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