View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1982_low_2 (Length: 474)
Name: NF1982_low_2
Description: NF1982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1982_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 4 - 461
Target Start/End: Complemental strand, 34549820 - 34549383
Alignment:
| Q |
4 |
tacgaaggaatcttgtacactccaggtatttataga-atttatttagaaaataccaaatttgacaaagatgaagatgttaatgaagtgatacaacgacag |
102 |
Q |
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|||||||||||||| |||||||||||| || | ||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34549820 |
tacgaaggaatcttatacactccaggtcttga-agagatttatgtagaaaatactaaatttgacaaagatgaagatgttaatgaagtgatacaacgacag |
34549722 |
T |
|
| Q |
103 |
aataaatgattgtgtgtttggtgtgaggtatgaattattacaactatctccttttgtccctcctaactatgtctctttcctcactcgtttataatctctg |
202 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34549721 |
aataaatgattgagtgtttggtgtgaggtatgaattattacaactatctccttttgtccctcctacctatgtctctttcctcactcgtttataatctctg |
34549622 |
T |
|
| Q |
203 |
gtttagagaagaatccatcttctttaatgcatgaatttctcaaagtttctttttccctattcttgaagtttcgaaaataatttcacataaaggaactaag |
302 |
Q |
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||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
34549621 |
gtttagagaagaacccatcttctttaatgcatgaatttctca--------------------ttgaagtttcgaaaataatttcacataaaggaactaag |
34549542 |
T |
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| Q |
303 |
attttgtgtacaactttatcaattaggagggatacaaaatgtccaacattccatttggactaattcattcatgctgatcttttactcttgccatctttgc |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34549541 |
attttgtgtacaactttatcaattaggagggatacaaaatgtccaacattccatttggactaattcattcatgctgatcttttactcttgccgtctttgc |
34549442 |
T |
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| Q |
403 |
tagaaacttgtaagaagtgtgatttgcgtcacttattatatttctaagaaattggaatt |
461 |
Q |
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| T |
34549441 |
aagaaacttgtaagaagtgtgatttgcgtcacttattatatttctaagaacttggaatt |
34549383 |
T |
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Target: chr7; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 10 - 155
Target Start/End: Original strand, 34377566 - 34377711
Alignment:
| Q |
10 |
ggaatcttgtacactccaggtatttatagaatttatttagaaaataccaaatttgacaaagatgaagatgttaatgaagtgatacaacgacagaataaat |
109 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34377566 |
ggaatcttgtacactccaggtatttatagaatttgtgtagaagataccaaatttgacatagatgaagatgttaatgaagtgatacaacgacagaataaat |
34377665 |
T |
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| Q |
110 |
gattgtgtgtttggtgtgaggtatgaattattacaactatctcctt |
155 |
Q |
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| T |
34377666 |
gattgtgtgtttggtgtgaggtatgaattattacaactttctcctt |
34377711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 6 - 270
Target Start/End: Original strand, 135067 - 135344
Alignment:
| Q |
6 |
cgaaggaatcttgtacactccaggtatttatagaatttatttagaaaataccaaatttgacaaagatgaagatgttaatgaagtgatacaacgacagaat |
105 |
Q |
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|||||||||||| ||||| ||| || ||||| ||||| |||| ||||||||||||||||| || | |||||||||||||| |||||||||||||| ||| |
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| T |
135067 |
cgaaggaatcttatacaccccacgtctttatgaaatttctttaaaaaataccaaatttgacgaatacgaagatgttaatgacgtgatacaacgacacaat |
135166 |
T |
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| Q |
106 |
aaatgattgtgtgtttggtgtgaggtatgaattatt-----acaactatctccttttgtc--cctcctaactatgtctctttcctcac--tcgtt-tata |
195 |
Q |
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||||||| | ||| ||||| |||||||| | || | || ||||||| |||| ||| ||||||||||||||||||| | ||||| | | |
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| T |
135167 |
aaatgatcgagtg-ttggtatgaggtattacaactttctccgcctctttctccttctgtcttactcttaactatgtctctttcctctcggtcgttctttc |
135265 |
T |
|
| Q |
196 |
atctctggtttagagaagaatccatc----ttctttaatgcatgaatttctcaaagtttctttttccctattcttgaag |
270 |
Q |
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||||||||||| |||||||| ||||| |||||||||||||||||||||||||| || ||||| ||||||||||||| |
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| T |
135266 |
atctctggttttgagaagaacccatcttctttctttaatgcatgaatttctcaaagattatttttgcctattcttgaag |
135344 |
T |
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