View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1982_low_8 (Length: 249)
Name: NF1982_low_8
Description: NF1982
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1982_low_8 |
 | |
|
| [»] scaffold0038 (4 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 29)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 28297105 - 28297343
Alignment:
| Q |
1 |
accatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28297105 |
accatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccatccctccagtcccatagatccctagcatctgaacttcacca |
28297204 |
T |
|
| Q |
101 |
ttagatccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttgg |
200 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
28297205 |
ttagatctgagatccagaaatgaatttacttttaggaccctagactggagaccaacggggtaatcggcaacatataaaggaacacgattgatcttgctgg |
28297304 |
T |
|
| Q |
201 |
atacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
28297305 |
atacgtatttgactatcttctcaataaactcatattcat |
28297343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28514968 - 28514730
Alignment:
| Q |
1 |
accatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcacca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28514968 |
accatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccatccctccagtcccatagatccctagcatctgaacttcacca |
28514869 |
T |
|
| Q |
101 |
ttagatccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttgg |
200 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| ||| |
|
|
| T |
28514868 |
ttagatctgagatccagaaatgaatttacttttaggaccctagactggagaccaacggggtaatcggcaacatataaaggaacacgattgatcttgctgg |
28514769 |
T |
|
| Q |
201 |
atacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
28514768 |
atacgtatttgactatcttctcaataaactcatattcat |
28514730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28235382 - 28235144
Alignment:
| Q |
1 |
accatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcacca |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28235382 |
accatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttccaattccaccagtcccatagatccctagcatctgaacttcacca |
28235283 |
T |
|
| Q |
101 |
ttagatccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttgg |
200 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||| | |
|
|
| T |
28235282 |
ttagatccaacatccacacatgaagttacttttaggaccctagacttgagaccaacagggtaatcggcaacatataaaggaacatgattgatcttgtttg |
28235183 |
T |
|
| Q |
201 |
atacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||||| |
|
|
| T |
28235182 |
atacatatttgactatcttcttaatatacttgtattcat |
28235144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28326295 - 28326057
Alignment:
| Q |
1 |
accatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
28326295 |
accatcaaattgatcggctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaactttacca |
28326196 |
T |
|
| Q |
101 |
ttagatccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttgg |
200 |
Q |
| |
|
|||||||||||||| | || ||||||||||| ||||| ||||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||| || |
|
|
| T |
28326195 |
ttagatccaacatctataagtgaatttacttctaggatcctagactcgagacctacagggtaatccgcaacatataaaggaacacaactgatcttcctga |
28326096 |
T |
|
| Q |
201 |
atacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
28326095 |
atacgtatttgactatcttctcaataaactcgtattcat |
28326057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 3 - 239
Target Start/End: Complemental strand, 28186208 - 28185972
Alignment:
| Q |
3 |
catcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccatt |
102 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||||| |||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
28186208 |
catcaaattgatcagctagggaattataaactgctcttgcaagtgtcgtctttcccattcctccaggcccatagatccctagcatctgaacttcaccatt |
28186109 |
T |
|
| Q |
103 |
agatccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggat |
202 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
28186108 |
agatccaaaatccataagtgaatttacttttagaaccctagactcgataccaacagggaaatcagcaacatataaaggaacatgattgatcttgttagat |
28186009 |
T |
|
| Q |
203 |
acatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28186008 |
acatatttgactatcttctcaataaactcgtgttcat |
28185972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 28243609 - 28243374
Alignment:
| Q |
4 |
atcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccatta |
103 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |
|
|
| T |
28243609 |
atcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatccctagcatatgaactacaccagta |
28243510 |
T |
|
| Q |
104 |
gatccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggata |
203 |
Q |
| |
|
||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |
|
|
| T |
28243509 |
gatccgacatcaagaaatttatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatatagaggaacacgattgattttgctggata |
28243410 |
T |
|
| Q |
204 |
catatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
28243409 |
aatattttactatcttctcaataaactcgtattcat |
28243374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28181934 - 28181696
Alignment:
| Q |
1 |
accatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcacca |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28181934 |
accatcaaattgatcagctatggaattataaactgctcttgcaagcgtcgtctttcccattcctccagtcccatagatccctagcatctgaacttcacca |
28181835 |
T |
|
| Q |
101 |
ttagatccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttgg |
200 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||||| |||| |
|
|
| T |
28181834 |
ttagatccgacatccagaaatgaatttacttttaggaccctagactcgagaccaacatagtaatcggcaacatataaaggaacacaattgatctttttgg |
28181735 |
T |
|
| Q |
201 |
atacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
| || |||||||||||||| || |||||||| ||||||| |
|
|
| T |
28181734 |
aaacgtatttgactatcttttcgataaactcatattcat |
28181696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28227769 - 28227531
Alignment:
| Q |
1 |
accatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcacca |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| | |||| |||||||||| |||||| | |||||| |
|
|
| T |
28227769 |
accatcaaattgatcggctataaaattataaactgcccttgcaagtgttgtctttcccattccacgattcccgtagatccctatcatctgtgcttcacca |
28227670 |
T |
|
| Q |
101 |
ttagatccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttgg |
200 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||| || | ||||||||||||||| ||||||| |||||||||| ||||||||||||| | |
|
|
| T |
28227669 |
ttagatccaacatccataagtgaatttacttttaggaccctagattcaacaccaacagggtaatcggcaacatgtaaaggaacatgattgatcttgttag |
28227570 |
T |
|
| Q |
201 |
atacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
||| |||||||||||||||||| ||||||||| |||||| |
|
|
| T |
28227569 |
atatatatttgactatcttctcgataaactcgcattcat |
28227531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 28503931 - 28503795
Alignment:
| Q |
1 |
accatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcacca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
28503931 |
accatcaaattgatcggctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaactttacca |
28503832 |
T |
|
| Q |
101 |
ttagatccaacatccaaaaatgaatttacttttagga |
137 |
Q |
| |
|
|||||||||||||| | || ||||||||||| ||||| |
|
|
| T |
28503831 |
ttagatccaacatctataagtgaatttacttctagga |
28503795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 26623937 - 26623850
Alignment:
| Q |
152 |
ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
||||||||||| | |||||||| ||| || |||||||||||||||||||| | |||||||||||||| |||||||| || ||||||| |
|
|
| T |
26623937 |
ccaacagggtatttagcaacatgtaagggcacacgattgatcttgttggagatgtatttgactatcttttcaataaaatcatattcat |
26623850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 26729914 - 26729827
Alignment:
| Q |
152 |
ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
||||||||||| | |||||||| ||| || |||||||||||||||||||| | |||||||||||||| |||||||| || ||||||| |
|
|
| T |
26729914 |
ccaacagggtatttagcaacatgtaagggcacacgattgatcttgttggagatgtatttgactatcttttcaataaaatcatattcat |
26729827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 31288975 - 31288895
Alignment:
| Q |
148 |
gagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaa |
228 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| | || ||||||||||| |||| | | ||||| || |||||||| |
|
|
| T |
31288975 |
gagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacatctgtaactattttttcaataaa |
31288895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 26656631 - 26656544
Alignment:
| Q |
152 |
ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
||||||||||| | ||||||| |||| ||||||||||||||||| ||| | | ||||||||| ||||||||||||| |||||||| |
|
|
| T |
26656631 |
ccaacagggtatttggcaacatgtaaaaaaacacgattgatcttgtcggagatgtctttgactatattctcaataaacttgtattcat |
26656544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 26762602 - 26762515
Alignment:
| Q |
152 |
ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
||||||||||| | ||||||| |||| ||||||||||||||||| ||| | | ||||||||| ||||||||||||| |||||||| |
|
|
| T |
26762602 |
ccaacagggtatttggcaacatgtaaaaaaacacgattgatcttgtcggagatgtctttgactatattctcaataaacttgtattcat |
26762515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 29826649 - 29826562
Alignment:
| Q |
152 |
ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
|||||||||||||| ||||||| | ||| ||||| | |||||||||| || | ||||||||||||| |||||||||||||||||| |
|
|
| T |
29826649 |
ccaacagggtaatccgcaacatgaagagggacacgctcagtcttgttggaaacttctttgactatcttcacaataaactcgtattcat |
29826562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 28097812 - 28098046
Alignment:
| Q |
5 |
tcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattag |
104 |
Q |
| |
|
||||||||| | || ||| |||||||||| ||| | |||||||||||||| || || || || | ||||||||||| ||||||| || | | |||||| |
|
|
| T |
28097812 |
tcaaattgaccagcaatgaaattataaaccgcttttgcaagtgttgtcttacctatccctcctggtccatagatcccaagcatcttgactttatcattag |
28097911 |
T |
|
| Q |
105 |
atccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatac |
204 |
Q |
| |
|
||||||| | | || ||| |||||||||| || | | | || ||||| ||||||||| |||||| |||| | ||| |||| | ||||||||||| |
|
|
| T |
28097912 |
atccaacttttagaagtgagtttacttttaaaactcgatgttgtaggccaacggggtaatcaacaacatgtaaaaggacatgattcaatttgttggatac |
28098011 |
T |
|
| Q |
205 |
atatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
|||||||||||| | | |||||||||| |||||| |
|
|
| T |
28098012 |
atatttgactatttcccgaataaactcgaattcat |
28098046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 26959796 - 26959743
Alignment:
| Q |
148 |
gagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttgga |
201 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| | || ||||||||||| |
|
|
| T |
26959796 |
gagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttgga |
26959743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 228
Target Start/End: Complemental strand, 26849378 - 26849302
Alignment:
| Q |
152 |
ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaa |
228 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||| | |||||||||||||| |||| || ||||| ||| ||||||| |
|
|
| T |
26849378 |
ccaacaaggtaatcagcaacatgcaaaggaacatggttgatcttgttggagacatccttaactattttcccaataaa |
26849302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 26849525 - 26849461
Alignment:
| Q |
5 |
tcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagt |
69 |
Q |
| |
|
||||||||||| || || ||||||||||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
26849525 |
tcaaattgatcagcaatcgaattataaactgcttgagcaagtgttgtttttcccattcctccagt |
26849461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 31285225 - 31285161
Alignment:
| Q |
152 |
ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactat |
216 |
Q |
| |
|
||||||||||||| ||||||| ||| || |||||||||||||||||||| | ||||||||||| |
|
|
| T |
31285225 |
ccaacagggtaattggcaacatgtaagggcacacgattgatcttgttggagatgtatttgactat |
31285161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 25539209 - 25539122
Alignment:
| Q |
152 |
ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
||||||||||| | || ||||||||| |||| ||||||| |||||||| | | || |||||||||||||||||||| |||||||| |
|
|
| T |
25539209 |
ccaacagggtatttggccacatataaaaaaacatgattgatattgttggagatgtcttcgactatcttctcaataaacttgtattcat |
25539122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 239
Target Start/End: Complemental strand, 26803112 - 26803025
Alignment:
| Q |
152 |
ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
||||||||||||| |||||||| ||| || |||||||||||||||||| | ||||||||||||| |||| |||| |||||||| |
|
|
| T |
26803112 |
ccaacagggtaattagcaacatgtaagggctgacgattgatcttgttggagatgtatttgactatctctccaatcaacttgtattcat |
26803025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 27698102 - 27698189
Alignment:
| Q |
152 |
ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
||||||||||||| ||||||| ||| || |||| ||||||||||||| | ||||||||||||| |||||||||| |||||||| |
|
|
| T |
27698102 |
ccaacagggtaattggcaacatgtaagggctgacgactgatcttgttggagatgtatttgactatctcttcaataaacttgtattcat |
27698189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 25511575 - 25511518
Alignment:
| Q |
181 |
aacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattca |
238 |
Q |
| |
|
|||| |||||||||||||||| | | || |||||||||||||||||||| ||||||| |
|
|
| T |
25511575 |
aacatgattgatcttgttggagatgtcttcgactatcttctcaataaacttgtattca |
25511518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 26647115 - 26647058
Alignment:
| Q |
182 |
acacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
|||||||||||||||||||| | | || |||||||||| ||||||||| |||||||| |
|
|
| T |
26647115 |
acacgattgatcttgttggagatgtcttcgactatcttcccaataaacttgtattcat |
26647058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 26753083 - 26753026
Alignment:
| Q |
182 |
acacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
|||||||||||||||||||| | | || |||||||||| ||||||||| |||||||| |
|
|
| T |
26753083 |
acacgattgatcttgttggagatgtcttcgactatcttcccaataaacttgtattcat |
26753026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 26893105 - 26893153
Alignment:
| Q |
153 |
caacagggtaatcagcaacatataaaggaacacgattgatcttgttgga |
201 |
Q |
| |
|
||||||||||||||| |||||||||| || | |||||||||||||||| |
|
|
| T |
26893105 |
caacagggtaatcaggaacatataaaagagaaggattgatcttgttgga |
26893153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 28150595 - 28150495
Alignment:
| Q |
99 |
cattagatccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgtt |
198 |
Q |
| |
|
||||| |||||||| | | || |||||||||| || |||| | | ||| || ||||||||||||||| |||||| |||||| |||||| | |||||||| |
|
|
| T |
28150595 |
cattaaatccaacagctagaagtgaatttactattgggactcgacactgcaggccaacagggtaatcaacaacatgtaaagggacacgactaatcttgtt |
28150496 |
T |
|
| Q |
199 |
g |
199 |
Q |
| |
|
| |
|
|
| T |
28150495 |
g |
28150495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 29477437 - 29477513
Alignment:
| Q |
5 |
tcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccc |
81 |
Q |
| |
|
||||||||||| | || | |||||||||||||| ||||||||||| || || ||||| ||| ||||||||||||| |
|
|
| T |
29477437 |
tcaaattgatccgaaatcgtattataaactgctcgagcaagtgttgttttccctattccgccaatcccatagatccc |
29477513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 183; Significance: 4e-99; HSPs: 4)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 35544 - 35306
Alignment:
| Q |
1 |
accatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcacca |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
35544 |
accatcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttccaattccaccagtcccatagatccctagcatctgaacttcacca |
35445 |
T |
|
| Q |
101 |
ttagatccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttgg |
200 |
Q |
| |
|
|||||||||||||||| | ||||| ||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||||||| | |
|
|
| T |
35444 |
ttagatccaacatccacacatgaagttacttttaggaccctagacttgagaccaacagggtaatcggcaacatataaaggaacatgattgatcttgtttg |
35345 |
T |
|
| Q |
201 |
atacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
||||||||||||||||||||| |||| ||| |||||||| |
|
|
| T |
35344 |
atacatatttgactatcttcttaatatacttgtattcat |
35306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 4 - 239
Target Start/End: Complemental strand, 43771 - 43536
Alignment:
| Q |
4 |
atcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccatta |
103 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |
|
|
| T |
43771 |
atcaaattgatcagctatggaattataaactgctcttgcaagtgttgtctttcccattccaccagtcccatagatccctagcatatgaactacaccagta |
43672 |
T |
|
| Q |
104 |
gatccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggata |
203 |
Q |
| |
|
||||| ||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||| |
|
|
| T |
43671 |
gatccgacatcaagaaatttatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatatagaggaacacgattgattttgctggata |
43572 |
T |
|
| Q |
204 |
catatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
43571 |
aatattttactatcttctcaataaactcgtattcat |
43536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 28267 - 28029
Alignment:
| Q |
1 |
accatcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcacca |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| | |||| |||||||||| |||||| | |||||| |
|
|
| T |
28267 |
accatcaaattgatcggctataaaattataaactgcccttgcaagtgttgtctttcccattccacgattcccgtagatccctatcatctgtgcttcacca |
28168 |
T |
|
| Q |
101 |
ttagatccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttgg |
200 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||| || | ||||||||||||||| ||||||| |||||||||| ||||||||||||| | |
|
|
| T |
28167 |
ttagatccaacatccataagtgaatttacttttaggaccctagattcaacaccaacagggtaatcggcaacatgtaaaggaacatgattgatcttgttag |
28068 |
T |
|
| Q |
201 |
atacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
||| |||||||||||||||||| ||||||||| |||||| |
|
|
| T |
28067 |
atatatatttgactatcttctcgataaactcgcattcat |
28029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 141 - 239
Target Start/End: Complemental strand, 117470 - 117372
Alignment:
| Q |
141 |
tagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
||||||||||||| ||||||||||| ||||||||||||||||||| | ||||||| || |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
117470 |
tagactcgagacctacagggtaatccgcaacatataaaggaacacaactgatcttcctgaatacgtatttgactatcttctcaataaactcgtattcat |
117372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 3 - 239
Target Start/End: Original strand, 57661 - 57897
Alignment:
| Q |
3 |
catcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccatt |
102 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| | || |||||||||||||||||||| |||||||| |
|
|
| T |
57661 |
catcaaattgatcggctatggaattaaaaactgctctagcaagtgttgtctttcccattcctccaattccgtagatccctagcatctgaacttcaccatt |
57760 |
T |
|
| Q |
103 |
agatccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggat |
202 |
Q |
| |
|
||||| |||||||| || |||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||| ||||||||||||| ||| |
|
|
| T |
57761 |
agatctaacatccagaagtgaatttacttttaggaccctagattcgataccaacagggtaatcggcaacatataaaggaacatgattgatcttgttagat |
57860 |
T |
|
| Q |
203 |
acatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
|
|
| T |
57861 |
acatatttgactatcttctcaataaactcgcattcat |
57897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 216
Target Start/End: Complemental strand, 3280472 - 3280261
Alignment:
| Q |
5 |
tcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattag |
104 |
Q |
| |
|
|||||||||| || ||| |||||||||||||||| ||||| |||||||| |||||||| ||| |||||||| |||| ||||| || ||| ||||| |
|
|
| T |
3280472 |
tcaaattgattagcaatgaaattataaactgctcttgcaagagttgtcttacccattcctccaagtccatagatacctatcatcttgacttcataattag |
3280373 |
T |
|
| Q |
105 |
atccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatac |
204 |
Q |
| |
|
|| |||| || | || |||||||||||| ||||| | ||||| | ||||| |||||||| |||||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
3280372 |
atgcaacttctagaagtgaatttactttaaggactcgagactgcatgccaaccgggtaatcgacaacatgtaaaggagcacgatttatcttgttggatac |
3280273 |
T |
|
| Q |
205 |
atatttgactat |
216 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
3280272 |
atttttgactat |
3280261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 239
Target Start/End: Original strand, 5090322 - 5090556
Alignment:
| Q |
5 |
tcaaattgatcggctatggaattataaactgctctggcaagtgttgtctttcccattccaccagtcccatagatccctagcatctgaacatcaccattag |
104 |
Q |
| |
|
|||||||||| || ||| |||| |||| |||| | ||||||| || || |||||||| ||||||||||||||||||||||| || || | | |||||| |
|
|
| T |
5090322 |
tcaaattgatgagcaatgaaattgtaaattgcttttccaagtgtggttttacccattcctccagtcccatagatccctagcatttggactttatcattag |
5090421 |
T |
|
| Q |
105 |
atccaacatccaaaaatgaatttacttttaggaccctagactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatac |
204 |
Q |
| |
|
| |||| ||||| | ||||| || ||| || || | || ||| | ||||| |||||||||||||||| ||||||| |||||||||||||||| || |
|
|
| T |
5090422 |
aaccaatatccagtagtgaatataatttcagaacacgaggctctaatccaaccgggtaatcagcaacatgtaaaggagtgtgattgatcttgttggagac |
5090521 |
T |
|
| Q |
205 |
atatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
|||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
5090522 |
atatgtgactatcatctgaataaactcgtattcat |
5090556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 18731048 - 18731103
Alignment:
| Q |
184 |
acgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
18731048 |
acgactgatcttgttggagacatatttgactatcttttcaataaacttgtattcat |
18731103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 18655021 - 18655076
Alignment:
| Q |
184 |
acgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
18655021 |
acgactgatcttgttggagacatatttgactatctttccaataaacttgtattcat |
18655076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 267856 - 267943
Alignment:
| Q |
152 |
ccaacagggtaatcagcaacatataaaggaacacgattgatcttgttggatacatatttgactatcttctcaataaactcgtattcat |
239 |
Q |
| |
|
||||||||||||| ||||||| ||| || ||||| ||||||||||||| | ||||||||||||| ||||||||| |||||||| |
|
|
| T |
267856 |
ccaacagggtaattggcaacatgtaagggctcacgactgatcttgttggagatgtatttgactatctctccaataaacttgtattcat |
267943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 198
Target Start/End: Complemental strand, 26136564 - 26136508
Alignment:
| Q |
142 |
agactcgagaccaacagggtaatcagcaacatataaaggaacacgattgatcttgtt |
198 |
Q |
| |
|
||||||||| ||||| |||| ||| ||||||| |||| ||||||| ||||||||||| |
|
|
| T |
26136564 |
agactcgagcccaacggggtgatcggcaacatgtaaaagaacacggttgatcttgtt |
26136508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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