View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19830_high_1 (Length: 798)

Name: NF19830_high_1
Description: NF19830
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19830_high_1
NF19830_high_1
[»] chr6 (7 HSPs)
chr6 (18-783)||(31265041-31265797)
chr6 (292-677)||(22045162-22045549)
chr6 (325-670)||(22357555-22357902)
chr6 (706-753)||(3604720-3604767)
chr6 (706-753)||(30064069-30064116)
chr6 (706-751)||(7359183-7359228)
chr6 (711-752)||(34915923-34915964)
[»] chr1 (16 HSPs)
chr1 (292-677)||(12780713-12781100)
chr1 (708-753)||(19533040-19533085)
chr1 (707-781)||(7785366-7785440)
chr1 (713-753)||(48242711-48242751)
chr1 (706-753)||(46536280-46536327)
chr1 (706-753)||(52432252-52432299)
chr1 (711-753)||(36784259-36784301)
chr1 (712-753)||(34877210-34877251)
chr1 (712-753)||(52830534-52830575)
chr1 (706-753)||(11425990-11426037)
chr1 (706-753)||(17342768-17342815)
chr1 (706-753)||(27698752-27698799)
chr1 (706-753)||(43895787-43895834)
chr1 (706-781)||(2219540-2219615)
chr1 (711-753)||(36467316-36467358)
chr1 (712-753)||(16040023-16040064)
[»] chr2 (16 HSPs)
chr2 (292-677)||(44355549-44355936)
chr2 (706-753)||(565037-565084)
chr2 (706-753)||(14284393-14284440)
chr2 (706-753)||(28572151-28572198)
chr2 (706-783)||(43077815-43077892)
chr2 (706-753)||(3100340-3100387)
chr2 (706-753)||(13375594-13375641)
chr2 (706-753)||(44534607-44534654)
chr2 (711-753)||(41436024-41436066)
chr2 (708-753)||(24451725-24451770)
chr2 (706-753)||(7213415-7213462)
chr2 (711-753)||(3123588-3123630)
chr2 (707-753)||(5212078-5212124)
chr2 (711-753)||(42881397-42881439)
chr2 (713-783)||(33880106-33880176)
chr2 (712-753)||(44194598-44194639)
[»] chr8 (19 HSPs)
chr8 (367-677)||(31395865-31396177)
chr8 (292-586)||(2501330-2501625)
chr8 (303-677)||(2501926-2502297)
chr8 (707-753)||(33191029-33191075)
chr8 (706-753)||(138973-139020)
chr8 (706-753)||(5391988-5392035)
chr8 (710-753)||(29615742-29615785)
chr8 (706-753)||(39171483-39171530)
chr8 (711-753)||(2349295-2349337)
chr8 (712-753)||(29730988-29731029)
chr8 (706-753)||(34133021-34133068)
chr8 (711-753)||(9014545-9014587)
chr8 (711-753)||(34133072-34133114)
chr8 (716-753)||(138809-138846)
chr8 (711-748)||(12653632-12653669)
chr8 (712-753)||(26570279-26570320)
chr8 (712-753)||(31410728-31410769)
chr8 (710-751)||(34287201-34287242)
chr8 (712-753)||(44615485-44615526)
[»] scaffold0008 (1 HSPs)
scaffold0008 (292-586)||(84179-84476)
[»] chr7 (15 HSPs)
chr7 (706-753)||(48981319-48981366)
chr7 (708-753)||(38181994-38182039)
chr7 (706-753)||(7425999-7426046)
chr7 (706-753)||(11616501-11616548)
chr7 (710-753)||(33774161-33774204)
chr7 (706-753)||(34963931-34963978)
chr7 (706-753)||(40590945-40590992)
chr7 (712-753)||(31581563-31581604)
chr7 (712-753)||(37491026-37491067)
chr7 (706-783)||(12308319-12308396)
chr7 (710-749)||(34001968-34002007)
chr7 (710-753)||(46095568-46095611)
chr7 (706-753)||(46288551-46288598)
chr7 (711-753)||(7456707-7456749)
chr7 (706-751)||(5724829-5724874)
[»] chr4 (19 HSPs)
chr4 (706-753)||(33047438-33047485)
chr4 (706-753)||(49812169-49812216)
chr4 (706-753)||(8294971-8295018)
chr4 (706-753)||(18849879-18849926)
chr4 (706-751)||(29644295-29644340)
chr4 (711-751)||(28974252-28974292)
chr4 (706-753)||(1796551-1796598)
chr4 (706-753)||(42185916-42185963)
chr4 (706-753)||(47787967-47788014)
chr4 (706-753)||(48740460-48740507)
chr4 (707-753)||(1825368-1825414)
chr4 (707-753)||(3685952-3685998)
chr4 (708-753)||(8065489-8065534)
chr4 (708-753)||(31862736-31862781)
chr4 (724-753)||(32559121-32559150)
chr4 (712-753)||(34791072-34791113)
chr4 (716-753)||(35909986-35910023)
chr4 (712-753)||(42670490-42670531)
chr4 (712-753)||(48400750-48400791)
[»] chr3 (14 HSPs)
chr3 (706-753)||(54458430-54458477)
chr3 (707-753)||(43640685-43640731)
chr3 (707-753)||(48744166-48744212)
chr3 (706-753)||(21585530-21585577)
chr3 (713-753)||(21296623-21296663)
chr3 (706-750)||(33994597-33994641)
chr3 (713-753)||(49003217-49003257)
chr3 (706-753)||(9017739-9017786)
chr3 (706-753)||(39365137-39365184)
chr3 (706-753)||(41031512-41031559)
chr3 (706-741)||(54122355-54122390)
chr3 (715-753)||(26142855-26142893)
chr3 (707-753)||(32023221-32023267)
chr3 (712-753)||(54845638-54845679)
[»] chr5 (16 HSPs)
chr5 (706-783)||(3725127-3725204)
chr5 (706-753)||(11099598-11099645)
chr5 (706-753)||(15814603-15814650)
chr5 (706-753)||(39008069-39008116)
chr5 (710-753)||(41184061-41184104)
chr5 (707-753)||(6610776-6610822)
chr5 (707-753)||(7276324-7276370)
chr5 (711-753)||(13716955-13716997)
chr5 (712-753)||(4412329-4412370)
chr5 (706-751)||(41686614-41686659)
chr5 (706-753)||(4044597-4044644)
chr5 (706-753)||(8369818-8369865)
chr5 (706-753)||(42575759-42575806)
chr5 (724-753)||(10649995-10650024)
chr5 (712-753)||(13422472-13422513)
chr5 (712-753)||(25814310-25814351)
[»] scaffold0007 (1 HSPs)
scaffold0007 (711-783)||(230202-230274)
[»] scaffold0321 (1 HSPs)
scaffold0321 (708-753)||(9669-9714)


Alignment Details
Target: chr6 (Bit Score: 596; Significance: 0; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 18 - 783
Target Start/End: Original strand, 31265041 - 31265797
Alignment:
Q  18 attaaccagataaaaagtgcatttttcaactattttacaaatttgtcaccatttaatcttcagtttttagtttgtctctatcactcttttttctcctact 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31265041 attaactagataaaaagtgcatttttcaactattttacaaatttgtcaccatttaatcttcagtttttagtttgtctctatcactcttttttctcctact 31265140  T
Q  118 gtatcttcaataagttcgacataatggagaaagccttacttcgcctaagattggagaacaatattatggccataaggagcgtcttatatggcatgggcat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||         
T  31265141 gtatcttcaataagttcgacataatggagaaagccttacttcgcctaagattggagaacaatattatggccataaggagcgtattatatggcatg----- 31265235  T
Q  218 gttgacagtgtgcaaacacnnnnnnnnnnnnnnnnnnnatgcaaatagaaagtttatatcctaacattgaaggtatcattaactgcatccatcttaccac 317  Q
     ||||||||||||||||||                   ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  31265236 -ttgacagtgtgcaaacactttttttttttttttt---atgcaaatagaaagtttatatcctatcattggaggtatcattaactgcatccatcttaccac 31265331  T
Q  318 acttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31265332 acttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcat 31265431  T
Q  418 atcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaattttgatgttcaaccaaatatgtttgcacatcaaatatagggcata 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31265432 atcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaattttgatgttcaaccaaatatgtttgcacatcaaatatagggcata 31265531  T
Q  518 caccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttcttctattggaccaatttttcagtcaacttatca 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||    
T  31265532 caccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgttttcttctattggaccaatttttcagtcaatttatca 31265631  T
Q  618 cattaaatagataaaattaacataattataggtgaaaacttaaactatgaaacctcaatattgaattacttcatttgcagnnnnnnnntgtcccaaaata 717  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||| |||||||    
T  31265632 cattaaatagataaaattaacataattataggtgaaaacttaaactatgaaacctcaatattgaattacttcatttgcagaaaaaaaaagtctcaaaata 31265731  T
Q  718 acttagtcattttacttttcaatacaatattaattannnnnnnccttgataactctaattaatatt 783  Q
    |||||||||||| |||||||||||||||||||||||       |||| ||||||||||||||||||    
T  31265732 acttagtcatttcacttttcaatacaatattaattatttttttcctttataactctaattaatatt 31265797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 292 - 677
Target Start/End: Complemental strand, 22045549 - 22045162
Alignment:
Q  292 atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatga 391  Q
    ||||||| | ||||| |||||||||||||||  |||||| |||||||||| | ||||||||||| | | ||||||  | |||||||||| |  | | |||    
T  22045549 atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtga 22045450  T
Q  392 acactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaat 490  Q
     ||||||||||||| ||| ||||||||||||| ||||||| ||| || | | ||||||||| | |||  ||| ||| |||  ||||||||||| ||| ||    
T  22045449 gcactattttcttttaatatcctcatatcatcctcaaggattgaaacacgagaaagcaaatctttgtgttcacccaccaacctttgatgttcagccatat 22045350  T
Q  491 atgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttcttctat 590  Q
    | | |||||||||||||| |||| || ||||||||| || ||||  |  | ||||||||| ||||| ||||| |||||||||| ||||||||||||   |    
T  22045349 aagcttgcacatcaaataaagggtatgcaccatctccaataccaacttgagaatggttaacggctttaacaaagacatcatttaccatgtcttcttgcgt 22045250  T
Q  591 tgg-accaatttttcagtcaacttatcacattaaatagataaaattaacataattataggtgaaaacttaaactatgaaacctcaata 677  Q
    ||| ||||| |  |||  ||||| |||||||||||||  | |||||||||||||| || ||||||| ||||||||| ||||| |||||    
T  22045249 tggaaccaaatcctcaaccaactaatcacattaaataagttaaattaacataattgtatgtgaaaatttaaactataaaaccacaata 22045162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 325 - 670
Target Start/End: Original strand, 22357555 - 22357902
Alignment:
Q  325 tcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatca 424  Q
    |||||| |||||||||| | ||||||||||| | | |||| |  |  ||||||||| |  | |||||||||||||| |||| ||| |||||||||||||     
T  22357555 tcctacctgttttgacccacttcctacttccacgctactttgcatcaaaatattttccctaccatgaacactatttgcttttaatatcctcatatcatcc 22357654  T
Q  425 tcaaggactgatacccaataaagcaaatttgtgttatcatccatcaat-tttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccat 523  Q
    ||||||| ||| ||||   ||| ||||| | |||  | | ||| |||  ||||||||||| ||| ||| | |||||||||||||| |||| || ||||||    
T  22357655 tcaaggattgaaacccgggaaaacaaatctttgtgtttacccaccaacctttgatgttcagccatataagcttgcacatcaaataaagggtatgcaccat 22357754  T
Q  524 ctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttcttctattgg-accaatttttcagtcaacttatcacatta 622  Q
    |||||| ||||  |  ||||||||||| ||||||||||| |||||  |||||||||||||||| | |||| |  |||| ||||  ||||| |||||||||    
T  22357755 ctctaataccaacttgataatggttaacggcttgaacaaagacattgttttccatgtcttcttgtgttggaattaattcttcaaccaactaatcacatta 22357854  T
Q  623 aatagataaaattaacataattataggtgaaaacttaaactatgaaac 670  Q
    ||||  | |||||||||||| | || ||||||| ||||||||| ||||    
T  22357855 aataagttaaattaacataactgtatgtgaaaatttaaactataaaac 22357902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 3604767 - 3604720
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  3604767 tgtcctaaaataactgagtcatttcacttttcaatacaatattaatta 3604720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 30064116 - 30064069
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||| ||||||||| |||||||| ||||| |||||||||||||||||    
T  30064116 tgtcctaaaataactgagtcatttcactttccaatacaatattaatta 30064069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 706 - 751
Target Start/End: Original strand, 7359183 - 7359228
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaat 751  Q
    ||||||||||||||| |  ||||| |||||||||||||||||||||    
T  7359183 tgtcccaaaataactgaaccatttcacttttcaatacaatattaat 7359228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 711 - 752
Target Start/End: Complemental strand, 34915964 - 34915923
Alignment:
Q  711 caaaataacttagtcattttacttttcaatacaatattaatt 752  Q
    |||||||||| |||||||| ||||||||||| ||||||||||    
T  34915964 caaaataactgagtcatttcacttttcaataaaatattaatt 34915923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 1e-58; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 292 - 677
Target Start/End: Original strand, 12780713 - 12781100
Alignment:
Q  292 atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatga 391  Q
    ||||||||| ||||   ||||| ||||  ||| |||||||| |||||| | | ||||||||||||||||||||||||| |||||||||| |  |   | |    
T  12780713 atcattaaccgcatttttcttaacacatctatctcctacatattttgaaccacttcctacttccccaccacttggtttcgaaatattttccctactttca 12780812  T
Q  392 acactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaat 490  Q
    ||| | ||| |||| ||||||||||||||||| |||||   ||| |||| || ||| ||||   |||  ||| ||||||| |||||||||||| ||||||    
T  12780813 acattgtttgcttttaatgtcctcatatcatcctcaagtgttgaaacccgattaagaaaatccttgtgttcacccatcaacttttgatgttcagccaaat 12780912  T
Q  491 atgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttcttctat 590  Q
    | |||||||||||||||| ||||  | || ||||||||||||||  | || ||||||||| ||||||||||||||| ||||||||||||||||||||| |    
T  12780913 aagtttgcacatcaaatagagggtttgcatcatctctaaaaccaacttcaaaatggttaacggcttgaacaaggacttcattttccatgtcttcttctgt 12781012  T
Q  591 t-ggaccaatttttcagtcaacttatcacattaaatagataaaattaacataattataggtgaaaacttaaactatgaaacctcaata 677  Q
    | |||| ||||  |||  ||||| |||||| ||||| |||||||||||| |||||||  ||||||||||||||||| |||||||||||    
T  12781013 tgggacaaattcctcaaccaactaatcacaataaatcgataaaattaacgtaattatgagtgaaaacttaaactataaaacctcaata 12781100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 708 - 753
Target Start/End: Complemental strand, 19533085 - 19533040
Alignment:
Q  708 tcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||    
T  19533085 tcccaaaataactgagtcattttacttttcaatacaatattaatta 19533040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 707 - 781
Target Start/End: Complemental strand, 7785440 - 7785366
Alignment:
Q  707 gtcccaaaataacttagtcattttacttttcaatacaatattaattannnnnnnccttgataactctaattaata 781  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||||       |||| ||||||||||||||||    
T  7785440 gtcccataataactgagtcatttcacttttcaatacaatattaattattttttccctttataactctaattaata 7785366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 713 - 753
Target Start/End: Complemental strand, 48242751 - 48242711
Alignment:
Q  713 aaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  48242751 aaataacttagtcatttcacttttcaatacaatattaatta 48242711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 46536280 - 46536327
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||| |||||||||| |||||||| |||||||||||||||||||||||    
T  46536280 tgtctcaaaataactgagtcatttcacttttcaatacaatattaatta 46536327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 52432252 - 52432299
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||| |||||||||  |||||||||||||||||||||||||||||||    
T  52432252 tgtcctaaaataactaggtcattttacttttcaatacaatattaatta 52432299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 753
Target Start/End: Original strand, 36784259 - 36784301
Alignment:
Q  711 caaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  36784259 caaaataactgagtcatttcacttttcaatacaatattaatta 36784301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 753
Target Start/End: Complemental strand, 34877251 - 34877210
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||| | ||||||||||||||||||||||||||||||    
T  34877251 aaaataactgaatcattttacttttcaatacaatattaatta 34877210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 753
Target Start/End: Complemental strand, 52830575 - 52830534
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  52830575 aaaataactgagtcatttcacttttcaatacaatattaatta 52830534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 11426037 - 11425990
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||| ||||||||| |||||||| ||||| |||||||||||||||||    
T  11426037 tgtcctaaaataactgagtcatttcactttccaatacaatattaatta 11425990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 17342768 - 17342815
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||| |||||||||| ||| |||| |||||||||||||||||||||||    
T  17342768 tgtctcaaaataactgagttatttcacttttcaatacaatattaatta 17342815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 27698752 - 27698799
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||| ||||||| | |||||||| |||||||||||||||||||||||    
T  27698752 tgtcctaaaataattgagtcatttcacttttcaatacaatattaatta 27698799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 43895787 - 43895834
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||| |||||||| | |||||||| |||||||||||||||||||||||    
T  43895787 tgtctcaaaataaatgagtcatttcacttttcaatacaatattaatta 43895834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 706 - 781
Target Start/End: Complemental strand, 2219615 - 2219540
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaattannnnnnnccttgataactctaattaata 781  Q
    ||||||||||||| | |  ||||| |||||||||||||||||||||||       |||| ||||||||||||||||    
T  2219615 tgtcccaaaataattgaaccatttcacttttcaatacaatattaattactttttccctttataactctaattaata 2219540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 711 - 753
Target Start/End: Complemental strand, 36467358 - 36467316
Alignment:
Q  711 caaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||| ||| |||||||| |||||||||||||||||||||||    
T  36467358 caaaatgactgagtcatttcacttttcaatacaatattaatta 36467316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 753
Target Start/End: Original strand, 16040023 - 16040064
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||| |||||||| ||||| |||||||||||||||||    
T  16040023 aaaataactgagtcatttcactttccaatacaatattaatta 16040064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 92; Significance: 3e-44; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 292 - 677
Target Start/End: Complemental strand, 44355936 - 44355549
Alignment:
Q  292 atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatga 391  Q
    ||||||| | ||||| |||||||||||||||  |||||| |||||||||| | ||||||||||| | | ||||||  | |||||||||| |  | | |||    
T  44355936 atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtga 44355837  T
Q  392 acactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaat 490  Q
     ||||||||||||| ||| ||||||||||||| ||||||| ||| || | | ||||||||| | |||  ||| ||| |||  ||||||||||| ||| ||    
T  44355836 gcactattttcttttaatatcctcatatcatcctcaaggattgaaacacgagaaagcaaatctttgtgttcacccaccaacctttgatgttcagccatat 44355737  T
Q  491 atgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttcttctat 590  Q
    | | |||||||||||||| |||| || ||||||||| || ||||  |  | ||||||||| ||||| ||||| |||||||||| ||||||||||||   |    
T  44355736 aagcttgcacatcaaataaagggtatgcaccatctccaataccaacttgagaatggttaacggctttaacaaagacatcatttaccatgtcttcttgcgt 44355637  T
Q  591 tgg-accaatttttcagtcaacttatcacattaaatagataaaattaacataattataggtgaaaacttaaactatgaaacctcaata 677  Q
    ||| ||||| |  |||  ||||| |||||||||||||  | |||||||||||||| || ||||||| ||||||||| ||||| |||||    
T  44355636 tggaaccaaatcctcaaccaactaatcacattaaataagttaaattaacataattgtatgtgaaaatttaaactataaaaccacaata 44355549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 565037 - 565084
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| | ||||||||||||||||||||||||||||||    
T  565037 tgtcccaaaataactaaatcattttacttttcaatacaatattaatta 565084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 14284440 - 14284393
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||    
T  14284440 tgtcccaaaataactgagtcattttatttttcaatacaatattaatta 14284393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 28572151 - 28572198
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||    
T  28572151 tgtcccaaaataactgagtcatttcacttttcaatacaatattaatta 28572198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 706 - 783
Target Start/End: Complemental strand, 43077892 - 43077815
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaattannnnnnnccttgataactctaattaatatt 783  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||||       | || ||||||||||||||||||    
T  43077892 tgtcccaaaataacggagtcatttcacttttcaatacaatattaattattttttccttttataactctaattaatatt 43077815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 3100340 - 3100387
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||| |||||||||| |||||||| |||||||||||||||||||||||    
T  3100340 tgtctcaaaataactgagtcatttcacttttcaatacaatattaatta 3100387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 13375641 - 13375594
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||| |||||||||| |||||||| |||||||||||||||||||||||    
T  13375641 tgtctcaaaataactgagtcatttcacttttcaatacaatattaatta 13375594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 44534654 - 44534607
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||| |||||||||| |||||||| |||||||||||||||||||||||    
T  44534654 tgtctcaaaataactgagtcatttcacttttcaatacaatattaatta 44534607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 753
Target Start/End: Original strand, 41436024 - 41436066
Alignment:
Q  711 caaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||||||| |||||||| |||||||||||||||||||||||    
T  41436024 caaaataactgagtcatttcacttttcaatacaatattaatta 41436066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 708 - 753
Target Start/End: Original strand, 24451725 - 24451770
Alignment:
Q  708 tcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||| |||||||| ||||| |||||||||||||||||    
T  24451725 tcccaaaataactaagtcatttcactttccaatacaatattaatta 24451770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 7213415 - 7213462
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||| | | |||||| |||||||||||||||||||||||    
T  7213415 tgtcccaaaataattaaatcatttcacttttcaatacaatattaatta 7213462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 711 - 753
Target Start/End: Original strand, 3123588 - 3123630
Alignment:
Q  711 caaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||||||| |||||||| ||||| |||||||||||||||||    
T  3123588 caaaataactgagtcatttcactttccaatacaatattaatta 3123630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 707 - 753
Target Start/End: Complemental strand, 5212124 - 5212078
Alignment:
Q  707 gtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||| ||||||||| ||| |||| |||||||||||||||||||||||    
T  5212124 gtcctaaaataactgagttatttcacttttcaatacaatattaatta 5212078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 711 - 753
Target Start/End: Complemental strand, 42881439 - 42881397
Alignment:
Q  711 caaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||||||| | |||||| |||||||||||||||||||||||    
T  42881439 caaaataactgaatcatttcacttttcaatacaatattaatta 42881397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 713 - 783
Target Start/End: Original strand, 33880106 - 33880176
Alignment:
Q  713 aaataacttagtcattttacttttcaatacaatattaattannnnnnnccttgataactctaattaatatt 783  Q
    |||||| | |||||||| |||||| ||||||||||||||||       |||| ||||||||||||||||||    
T  33880106 aaataattgagtcatttcactttttaatacaatattaattactttttccctttataactctaattaatatt 33880176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 753
Target Start/End: Original strand, 44194598 - 44194639
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||| | |||||| |||||||||||||||||||||||    
T  44194598 aaaataactgaatcatttcacttttcaatacaatattaatta 44194639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 73; Significance: 6e-33; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 367 - 677
Target Start/End: Original strand, 31395865 - 31396177
Alignment:
Q  367 ttttgaaatatttttctcaacatgaacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatcc 466  Q
    |||||||||||||| |  | | ||||||||||||||||| ||| ||||||||||||| ||||||| ||| || |   ||||||||| | | |  ||  ||    
T  31395865 ttttgaaatattttccctaccgtgaacactattttcttttaatatcctcatatcatcctcaaggattgaaacacgggaaagcaaatctttttgttcgccc 31395964  T
Q  467 atcaat-tttgatgttcaaccaaatatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaagga 565  Q
    | |||  ||||||||||| ||| ||| | |||||||||||||| |||| || ||||||||| || ||||  | || ||||||||| ||||| ||||| ||    
T  31395965 accaacctttgatgttcagccatataagcttgcacatcaaataaagggtatgcaccatctccaataccaacttcaaaatggttaacggctttaacaaaga 31396064  T
Q  566 catcattttccatgtcttcttctattgg-accaatttttcagtcaacttatcacattaaatagataaaattaacataattataggtgaaaacttaaacta 664  Q
    ||||||||| |||||||||||   |||| |||||||  |||  ||||| |||||||||||||  | |||||||||||||| || ||||||| ||||||||    
T  31396065 catcatttttcatgtcttcttgcgttggaaccaattcctcaaccaactaatcacattaaataagttaaattaacataattgtatgtgaaaatttaaacta 31396164  T
Q  665 tgaaacctcaata 677  Q
    | ||||| |||||    
T  31396165 taaaaccacaata 31396177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 292 - 586
Target Start/End: Complemental strand, 2501625 - 2501330
Alignment:
Q  292 atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaac-atg 390  Q
    ||||||| | ||||| |||||||||||||||  |||||| |||||||||| | ||||||||||| | | ||||||  | |||||| ||||||| ||  ||    
T  2501625 atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatagaaata-ttttctctactgtg 2501527  T
Q  391 aacactattttctttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaaa 489  Q
    ||||||||||  ||| ||| ||||||||||||| ||||||| ||| || |   ||||||||| | |||  ||  ||| |||  ||||||||||| ||| |    
T  2501526 aacactatttgattttaatatcctcatatcatcctcaaggattgaaacacgggaaagcaaatatttgtgttcgcccaccaacctttgatgttcagccata 2501427  T
Q  490 tatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttctt 586  Q
    || | |||||||||||||| |||| |  ||||||||| || ||||  | || ||||||||| ||||| ||| | |||||||||||||||||| ||||    
T  2501426 taagcttgcacatcaaataaagggtacgcaccatctccaataccaacttcagaatggttaacggctttaaccaagacatcattttccatgtcctctt 2501330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 303 - 677
Target Start/End: Original strand, 2501926 - 2502297
Alignment:
Q  303 catccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatgaacactattttc 402  Q
    |||| |||||||||||||||  ||| || |||||||||| | ||||||||||| | | ||||||  | |||||||||| |  | | |||||||||||| |    
T  2501926 catcaatcttaccacacttaactcc-acctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccctaccgtgaacactatttgc 2502024  T
Q  403 tttcaatgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaat-tttgatgttcaaccaaatatgtttgcaca 501  Q
    ||| ||| || |||||||||| ||||||| ||| || |   ||||||||| | |||  ||  ||| |||  ||||||||||| ||| ||| | |||||||    
T  2502025 tttaaatatcatcatatcatcctcaaggattgaaacacgggaaagcaaatctttgtgttcgcccaccaacctttgatgttcagccatataagcttgcaca 2502124  T
Q  502 tcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttcttctattgg-accaatt 600  Q
    ||||||| |||  || ||||||||| || ||||  | || ||| ||||| ||||| ||| |  ||||||||||||||||||||||   |||| |||||||    
T  2502125 tcaaataaaggatatgcaccatctccaataccaacttcagaatcgttaacggctttaaccaatacatcattttccatgtcttcttgcgttggaaccaatt 2502224  T
Q  601 tttcagtcaacttatcacattaaatagataaaattaacataattataggtgaaaacttaaactatgaaacctcaata 677  Q
          |||||| |||||||||||||  | |||||||||||||| || | ||||| ||||||||| ||||| |||||    
T  2502225 ----cctcaactaatcacattaaataagttaaattaacataattgtatgcgaaaatttaaactataaaaccacaata 2502297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 707 - 753
Target Start/End: Complemental strand, 33191075 - 33191029
Alignment:
Q  707 gtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||    
T  33191075 gtcccaaaataactgagtcatttcacttttcaatacaatattaatta 33191029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 138973 - 139020
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||||    
T  138973 tgtcccaaaataaccgagtcatttcacttttcaatacaatattaatta 139020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 5391988 - 5392035
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||| |||||||||| |||||||| |||||||||||||||||||||||    
T  5391988 tgtctcaaaataactgagtcatttcacttttcaatacaatattaatta 5392035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 710 - 753
Target Start/End: Original strand, 29615742 - 29615785
Alignment:
Q  710 ccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||| | ||||||||||||||||||||||||||||||    
T  29615742 ccaaaataactgaatcattttacttttcaatacaatattaatta 29615785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 39171483 - 39171530
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  39171483 tgtcccaaaataactgagtcatttaacttttcaatataatattaatta 39171530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 753
Target Start/End: Original strand, 2349295 - 2349337
Alignment:
Q  711 caaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  2349295 caaaataacttagtcatttcacgtttcaatacaatattaatta 2349337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 753
Target Start/End: Complemental strand, 29731029 - 29730988
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  29731029 aaaataactgagtcatttcacttttcaatacaatattaatta 29730988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 34133021 - 34133068
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| |||||||  |||||| ||||||||||||||||    
T  34133021 tgtcccaaaataactgagtcattacactttttaatacaatattaatta 34133068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 711 - 753
Target Start/End: Original strand, 9014545 - 9014587
Alignment:
Q  711 caaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||||||| ||||||||||||||| |||||||| |||||||    
T  9014545 caaaataactgagtcattttactttttaatacaattttaatta 9014587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 711 - 753
Target Start/End: Original strand, 34133072 - 34133114
Alignment:
Q  711 caaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||||||| |||||||  |||||||||||||||||||||||    
T  34133072 caaaataactgagtcattacacttttcaatacaatattaatta 34133114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 753
Target Start/End: Complemental strand, 138846 - 138809
Alignment:
Q  716 taacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  138846 taactaagtcatttcacttttcaatacaatattaatta 138809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 711 - 748
Target Start/End: Original strand, 12653632 - 12653669
Alignment:
Q  711 caaaataacttagtcattttacttttcaatacaatatt 748  Q
    |||||||||| |||||||| ||||||||||||||||||    
T  12653632 caaaataactaagtcatttcacttttcaatacaatatt 12653669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 753
Target Start/End: Complemental strand, 26570320 - 26570279
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||| | |||||| |||||||||||||||||||||||    
T  26570320 aaaataactgattcatttcacttttcaatacaatattaatta 26570279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 753
Target Start/End: Complemental strand, 31410769 - 31410728
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||| |||||||| ||||| |||||||||||||||||    
T  31410769 aaaataactgagtcatttcactttccaatacaatattaatta 31410728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 710 - 751
Target Start/End: Complemental strand, 34287242 - 34287201
Alignment:
Q  710 ccaaaataacttagtcattttacttttcaatacaatattaat 751  Q
    ||||||||||| |||||||| |||||||||||||| ||||||    
T  34287242 ccaaaataactgagtcatttcacttttcaatacaacattaat 34287201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 753
Target Start/End: Complemental strand, 44615526 - 44615485
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||| |||||||| ||||| |||||||||||||||||    
T  44615526 aaaataactgagtcatttcactttccaatacaatattaatta 44615485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 71; Significance: 1e-31; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 292 - 586
Target Start/End: Original strand, 84179 - 84476
Alignment:
Q  292 atcattaactgcatccatcttaccacacttatttcctacatgttttgacctatttcctacttccccaccacttggttttgaaatatttttctcaacatga 391  Q
    ||||||| | ||||| |||||||||||||||  |||||| |||||||||| | ||||||||||| | | ||||||  | |||||||||| || | | |||    
T  84179 atcattatccgcatcaatcttaccacacttaactcctacctgttttgacccacttcctacttccacgctacttggcatcgaaatattttccttaccgtga 84278  T
Q  392 acactattttctttca--atgtcctcatatcatcatcaaggactgatacccaataaagcaaatttgtgttatcatccatcaa-ttttgatgttcaaccaa 488  Q
    ||||||||| |||| |  || ||||||||||||| ||||||| ||| || |   ||||||||| | |||  ||||||| |||  ||||||||| | |||     
T  84279 acactatttgcttttaatatctcctcatatcatcctcaaggattgaaacacgggaaagcaaatctttgtgttcatccaccaacctttgatgtttagccat 84378  T
Q  489 atatgtttgcacatcaaatatagggcatacaccatctctaaaaccacatacataatggttaaaggcttgaacaaggacatcattttccatgtcttctt 586  Q
    ||| | |||||||||||||| |||| || ||||||||| || ||||  |  | ||||||||| ||||| ||||| |||||||||||||||||||||||    
T  84379 ataagcttgcacatcaaataaagggtatgcaccatctccaataccaacttgagaatggttaacggctttaacaaagacatcattttccatgtcttctt 84476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 48981319 - 48981366
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||    
T  48981319 tgtcccaaaataactgagtcatttcacttttcaatacaatattaatta 48981366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 708 - 753
Target Start/End: Complemental strand, 38182039 - 38181994
Alignment:
Q  708 tcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||    
T  38182039 tcccaaaataactgagtcattttacttttcaataaaatattaatta 38181994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 7426046 - 7425999
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||    
T  7426046 tgtcccaaaataactgagccatttcacttttcaatacaatattaatta 7425999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 11616501 - 11616548
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||||    
T  11616501 tgtcccaaaataactgagccatttcacttttcaatacaatattaatta 11616548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 710 - 753
Target Start/End: Complemental strand, 33774204 - 33774161
Alignment:
Q  710 ccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||| |||||||| |||||||||||||||||||||||    
T  33774204 ccaaaataactgagtcatttcacttttcaatacaatattaatta 33774161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 34963978 - 34963931
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| |||||||| ||||||||||||| |||||||||    
T  34963978 tgtcccaaaataactgagtcatttcacttttcaatacagtattaatta 34963931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 40590992 - 40590945
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| |||||||| |||||| ||||||||||||||||    
T  40590992 tgtcccaaaataactgagtcatttcacttttaaatacaatattaatta 40590945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 753
Target Start/End: Complemental strand, 31581604 - 31581563
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  31581604 aaaataactgagtcatttcacttttcaatacaatattaatta 31581563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 753
Target Start/End: Complemental strand, 37491067 - 37491026
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||| ||| ||||||||||||||||||||||||||||    
T  37491067 aaaataactgagttattttacttttcaatacaatattaatta 37491026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 706 - 783
Target Start/End: Original strand, 12308319 - 12308396
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaattannnnnnnccttgataactctaattaatatt 783  Q
    |||| |||||||||| |||||||| | |||||||||||||||||||||       | || ||||||||||||||||||    
T  12308319 tgtctcaaaataactgagtcatttcaattttcaatacaatattaattacttttttcatttataactctaattaatatt 12308396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 749
Target Start/End: Complemental strand, 34002007 - 34001968
Alignment:
Q  710 ccaaaataacttagtcattttacttttcaatacaatatta 749  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  34002007 ccaaaataacttagtcatttcacatttcaatacaatatta 34001968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 710 - 753
Target Start/End: Complemental strand, 46095611 - 46095568
Alignment:
Q  710 ccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||  |||||||| |||||||||||||||||||||||    
T  46095611 ccaaaataaccgagtcatttcacttttcaatacaatattaatta 46095568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 46288598 - 46288551
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| || ||||| ||||||||||| |||||||||||    
T  46288598 tgtcccaaaataactgagccatttcacttttcaatataatattaatta 46288551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 711 - 753
Target Start/End: Complemental strand, 7456749 - 7456707
Alignment:
Q  711 caaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||||||| |||||||| || ||||||||||||||||||||    
T  7456749 caaaataactaagtcatttcacatttcaatacaatattaatta 7456707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 706 - 751
Target Start/End: Complemental strand, 5724874 - 5724829
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaat 751  Q
    ||||||||||||| | || ||||| |||||||||||||||||||||    
T  5724874 tgtcccaaaataagtgagccatttcacttttcaatacaatattaat 5724829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 33047438 - 33047485
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||    
T  33047438 tgtcccaaaataactgagtcatttcacttttcaatacaatattaatta 33047485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 49812169 - 49812216
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||    
T  49812169 tgtcccaaaataactgagtcatttcacttttcaatacaatattaatta 49812216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 8294971 - 8295018
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||  |||||||| |||||||||||||||||||||||    
T  8294971 tgtcccaaaataaccgagtcatttcacttttcaatacaatattaatta 8295018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 18849926 - 18849879
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| |||||||| ||||||||||| |||||||||||    
T  18849926 tgtcccaaaataactgagtcatttcacttttcaataaaatattaatta 18849879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 706 - 751
Target Start/End: Original strand, 29644295 - 29644340
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaat 751  Q
    ||||||||||||||| || ||||| |||||||||||||||||||||    
T  29644295 tgtcccaaaataactgagacatttcacttttcaatacaatattaat 29644340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 711 - 751
Target Start/End: Original strand, 28974252 - 28974292
Alignment:
Q  711 caaaataacttagtcattttacttttcaatacaatattaat 751  Q
    |||||||||| |||||||| |||||||||||||||||||||    
T  28974252 caaaataactgagtcatttcacttttcaatacaatattaat 28974292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 1796598 - 1796551
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||||||||||||  ||||||| | |||||||||||||||||||||    
T  1796598 tgtcccaaaataactgggtcatttcagttttcaatacaatattaatta 1796551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 42185963 - 42185916
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||| | ||||||||||||||||||||||  ||||||||    
T  42185963 tgtcccaaaataagtgagtcattttacttttcaatacatcattaatta 42185916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 47788014 - 47787967
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||| | |||||| | |||||||||||||||||||||||    
T  47788014 tgtcccaaaataattaagtcatataacttttcaatacaatattaatta 47787967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 48740460 - 48740507
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||| |||||||||| |||||||| ||||||||| |||||||||||||    
T  48740460 tgtctcaaaataactgagtcatttcacttttcaaaacaatattaatta 48740507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 707 - 753
Target Start/End: Complemental strand, 1825414 - 1825368
Alignment:
Q  707 gtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||| ||||||||| |||||||| ||||||||||| |||||||||||    
T  1825414 gtcctaaaataactgagtcatttcacttttcaatataatattaatta 1825368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 707 - 753
Target Start/End: Original strand, 3685952 - 3685998
Alignment:
Q  707 gtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||| ||||||||| |||||||| ||||| |||||||||||||||||    
T  3685952 gtcctaaaataactgagtcatttcactttccaatacaatattaatta 3685998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 753
Target Start/End: Original strand, 8065489 - 8065534
Alignment:
Q  708 tcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||  |||||||  |||||||||||||||||||||||    
T  8065489 tcccaaaataaccgagtcattccacttttcaatacaatattaatta 8065534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 753
Target Start/End: Original strand, 31862736 - 31862781
Alignment:
Q  708 tcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||  |||||||| |||||||||||| ||||||||||    
T  31862736 tcccaaaataaccgagtcatttcacttttcaatacgatattaatta 31862781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 724 - 753
Target Start/End: Original strand, 32559121 - 32559150
Alignment:
Q  724 tcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||||||||||||||||||    
T  32559121 tcattttacttttcaatacaatattaatta 32559150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 753
Target Start/End: Complemental strand, 34791113 - 34791072
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||| | ||||||||||||||| ||||||||||||||||    
T  34791113 aaaataattgagtcattttactttttaatacaatattaatta 34791072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 716 - 753
Target Start/End: Complemental strand, 35910023 - 35909986
Alignment:
Q  716 taacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  35910023 taactgagttattttacttttcaatacaatattaatta 35909986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 753
Target Start/End: Complemental strand, 42670531 - 42670490
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||||||||| ||||| || ||||||||||||||||||||    
T  42670531 aaaataacttagccatttcacctttcaatacaatattaatta 42670490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 753
Target Start/End: Complemental strand, 48400791 - 48400750
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||| | |||||||| |||||||||||||||||||||||    
T  48400791 aaaataattgagtcatttcacttttcaatacaatattaatta 48400750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 54458477 - 54458430
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  54458477 tgtcccaaaataactgagtaattttacttttcaatacaatattaatta 54458430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 707 - 753
Target Start/End: Complemental strand, 43640731 - 43640685
Alignment:
Q  707 gtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||    
T  43640731 gtcccaaaataactgagtcatttcacttttcaatacaatattaatta 43640685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 707 - 753
Target Start/End: Original strand, 48744166 - 48744212
Alignment:
Q  707 gtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||    
T  48744166 gtcccaaaataactaagtcattttactttttaatacaatattaatta 48744212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 21585577 - 21585530
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  21585577 tgtcccaaaataactgagtcatttcactttccaatacaatattaatta 21585530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 713 - 753
Target Start/End: Complemental strand, 21296663 - 21296623
Alignment:
Q  713 aaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  21296663 aaataactgagtcatttcacttttcaatacaatattaatta 21296623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 706 - 750
Target Start/End: Original strand, 33994597 - 33994641
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaa 750  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||    
T  33994597 tgtccaaaaataactgagtcatttcacttttcaatacaatattaa 33994641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 713 - 753
Target Start/End: Original strand, 49003217 - 49003257
Alignment:
Q  713 aaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||| | ||||||||||||||||||||||||||||||||    
T  49003217 aaataagtgagtcattttacttttcaatacaatattaatta 49003257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 9017739 - 9017786
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||| ||||||||| |||| ||| |||||||||||||||||||||||    
T  9017739 tgtcctaaaataactgagtcgtttcacttttcaatacaatattaatta 9017786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 39365184 - 39365137
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| || ||||| | |||||||||||||||||||||    
T  39365184 tgtcccaaaataactgagccatttcaattttcaatacaatattaatta 39365137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 41031512 - 41031559
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||| |||||||| | |||||||| |||||||||||||||||||||||    
T  41031512 tgtcgcaaaataattgagtcatttcacttttcaatacaatattaatta 41031559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 741
Target Start/End: Complemental strand, 54122390 - 54122355
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaata 741  Q
    |||||||||||||||||||||||| |||||||||||    
T  54122390 tgtcccaaaataacttagtcatttcacttttcaata 54122355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 715 - 753
Target Start/End: Original strand, 26142855 - 26142893
Alignment:
Q  715 ataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||| |||||||||||||||||||| |||||||||||    
T  26142855 ataactgagtcattttacttttcaatataatattaatta 26142893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 707 - 753
Target Start/End: Complemental strand, 32023267 - 32023221
Alignment:
Q  707 gtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||| ||||||||| |||||||| ||||| |||||||||||||||||    
T  32023267 gtcctaaaataactgagtcatttcactttccaatacaatattaatta 32023221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 753
Target Start/End: Complemental strand, 54845679 - 54845638
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||| |||||||| |||||| ||||||||||||||||    
T  54845679 aaaataactaagtcatttcactttttaatacaatattaatta 54845638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 706 - 783
Target Start/End: Original strand, 3725127 - 3725204
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaattannnnnnnccttgataactctaattaatatt 783  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||||        |||| ||||||||||||||||||    
T  3725127 tgtcctaaaataactgagtcatttcacttttcaatacaatattaatttttttttccctttataactctaattaatatt 3725204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 11099645 - 11099598
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| |||||||| ||||| |||||||||||||||||    
T  11099645 tgtcccaaaataactgagtcatttcactttccaatacaatattaatta 11099598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 15814603 - 15814650
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||| |||||||||| |||||||| |||||||||||||||||||||||    
T  15814603 tgtctcaaaataactgagtcatttcacttttcaatacaatattaatta 15814650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 753
Target Start/End: Original strand, 39008069 - 39008116
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||| ||||||||| |||||||| |||||||||||||||||||||||    
T  39008069 tgtcctaaaataactaagtcatttcacttttcaatacaatattaatta 39008116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 710 - 753
Target Start/End: Original strand, 41184061 - 41184104
Alignment:
Q  710 ccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||    
T  41184061 ccaaaataactgagtgattttacttttcaatacaatattaatta 41184104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 707 - 753
Target Start/End: Original strand, 6610776 - 6610822
Alignment:
Q  707 gtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||||||||||| |||||||| |||||| ||||||||||||||||    
T  6610776 gtcccaaaataactgagtcatttcacttttaaatacaatattaatta 6610822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 707 - 753
Target Start/End: Original strand, 7276324 - 7276370
Alignment:
Q  707 gtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||||||    
T  7276324 gtcctaaaataactgagttattttacttttcaatacaatattaatta 7276370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 711 - 753
Target Start/End: Original strand, 13716955 - 13716997
Alignment:
Q  711 caaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  13716955 caaaataactgagtcattttatttttcaatacaatattaatta 13716997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 712 - 753
Target Start/End: Original strand, 4412329 - 4412370
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||| |||||||| |||||||||||||||||||||||    
T  4412329 aaaataactaagtcatttcacttttcaatacaatattaatta 4412370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 706 - 751
Target Start/End: Complemental strand, 41686659 - 41686614
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaat 751  Q
    ||||||||||||||| |||||||| ||||||||||||||| |||||    
T  41686659 tgtcccaaaataactgagtcatttcacttttcaatacaattttaat 41686614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 4044644 - 4044597
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||| | | |||||| |||||||||||||||||||||||    
T  4044644 tgtcccaaaataattgaatcatttcacttttcaatacaatattaatta 4044597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 8369865 - 8369818
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||| || ||||| | |||||||||||||||||||||    
T  8369865 tgtcccaaaataactgagccatttcatttttcaatacaatattaatta 8369818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 706 - 753
Target Start/End: Complemental strand, 42575806 - 42575759
Alignment:
Q  706 tgtcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||  || ||||| |||||||||||||||||||||||    
T  42575806 tgtcccaaaataaccgagccatttcacttttcaatacaatattaatta 42575759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 724 - 753
Target Start/End: Original strand, 10649995 - 10650024
Alignment:
Q  724 tcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||||||||||||||||||||    
T  10649995 tcattttacttttcaatacaatattaatta 10650024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 753
Target Start/End: Complemental strand, 13422513 - 13422472
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||| | |||||| |||||||||||||||||||||||    
T  13422513 aaaataactgattcatttcacttttcaatacaatattaatta 13422472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 712 - 753
Target Start/End: Original strand, 25814310 - 25814351
Alignment:
Q  712 aaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||| | |||||| |||||||||||||||||||||||    
T  25814310 aaaataactgaatcatttcacttttcaatacaatattaatta 25814351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 711 - 783
Target Start/End: Original strand, 230202 - 230274
Alignment:
Q  711 caaaataacttagtcattttacttttcaatacaatattaattannnnnnnccttgataactctaattaatatt 783  Q
    |||||||||| |||||||| |||||||||||||||||||||||       | || ||||||||||||||||||    
T  230202 caaaataactgagtcatttcacttttcaatacaatattaattatttttttcttttataactctaattaatatt 230274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 708 - 753
Target Start/End: Complemental strand, 9714 - 9669
Alignment:
Q  708 tcccaaaataacttagtcattttacttttcaatacaatattaatta 753  Q
    ||||||||||||  ||| |||| |||||||||||||||||||||||    
T  9714 tcccaaaataacagagtaatttcacttttcaatacaatattaatta 9669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University